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7
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1
answer
687
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1
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bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 12 months ago by cristian • 110 • updated 25 days ago by Biostar ♦♦ 20
0
votes
0
answers
116
views
0
answers
Removing unmatched Ns from query sequence based on alignment
genome alignment contig sequence written 10 weeks ago by Michael Gruenstaeudl • 20
3
votes
1
answer
275
views
1
answer
The --contig option for SPAdes
assembly contig spades written 3 months ago by 934963534 • 10 • updated 3 months ago by dark.lord • 0
6
votes
1
answer
214
views
1
answer
What is URL of Contig in VCF format?
contig written 3 months ago by 2012secondseason • 10 • updated 3 months ago by Ram ♦ 16k
0
votes
0
answers
209
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0
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Local BLAST+ search very slow
contig blast written 4 months ago by dylan.lawrence • 10
2
votes
2
answers
751
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2
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How to map NCBI contig positions to chromosome positions
ncbi contig ribosomal grch37.13 written 17 months ago by Jackie • 60 • updated 5 months ago by tdmurphy • 110
0
votes
1
answer
300
views
1
answer
How to extract variable nucleotide regions from a list of contigs
extract contig refseq blast written 7 months ago by kayrouz.1 • 0 • updated 7 months ago by Vijay Lakhujani ♦ 2.8k
0
votes
0
answers
348
views
0
answers
Difference between unlocalized and unplaced fragments
contig chromosomer scaffold scaffolding written 10 months ago by cristian • 110
12
votes
5
answers
2.4k
views
5 follow
5
answers
How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 3.5 years ago by Paul • 1.1k • updated 11 months ago by Brian Bushnell ♦ 15k
7
votes
2
answers
962
views
2
answers
Scaffolding with pacbio reads
assembly contig scaffold pacbio written 12 months ago by guillaume.rbt • 450 • updated 12 months ago by shwethacm • 180
2
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0
answers
398
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0
answers
dedupe.sh from bbmap excludes contigs with insufficient overlap
assembly contig bbmap dedupe written 12 months ago by cristian • 110
0
votes
1
answer
609
views
1
answer
Number of reference sequence contigs in sam/bam header does not match the number in my fasta
fasta bowtie2 contig sam bam written 16 months ago by marcusanaymik • 10 • updated 16 months ago by Brian Bushnell ♦ 15k
1
vote
0
answers
953
views
0
answers
Contigs Taxonomy from assembled metagenomes
metagenomics taxonomy metagenome contig written 17 months ago by David • 80
0
votes
0
answers
651
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0
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Contig's coverage and bam files.
contig coverage bam written 20 months ago by Picasa • 350 • updated 18 months ago by Biostar ♦♦ 20
1
vote
0
answers
776
views
0
answers
What is the format of *.contigs.fasta files?
fasta next-gen contig written 22 months ago by Na Sed • 260 • updated 22 months ago by genomax ♦ 52k
9
votes
1
answer
1.9k
views
1
answer
What are contig, singleton read and discordant mate pairs?
singleton reads contig discordant mate pairs written 2.4 years ago by MAPK • 1.2k
1
vote
1
answer
1.4k
views
1
answer
Contig length distribution plotting with R
plotting R contig length written 2.6 years ago by seta • 1000 • updated 2.6 years ago by h.mon ♦ 16k
0
votes
0
answers
898
views
0
answers
Transcriptome assembly improvement with Soap-denovo trans
assembly contig rna-seq soap-denovo trans written 2.6 years ago by seta • 1000
3
votes
2
answers
2.7k
views
2
answers
Spades Assembler output
assembly contig spades written 2.7 years ago by midox • 190 • updated 2.7 years ago by MathGon • 10
0
votes
1
answer
854
views
1
answer
contigs alignment with long reads
ngs alignment contig written 2.7 years ago by midox • 190
0
votes
0
answers
708
views
0
answers
traversal stats explanations
assembly contig quast traversal minia written 2.8 years ago by pbigbig • 190
0
votes
0
answers
740
views
0
answers
What is "M" letter in the singlets output file generated by CAP3
singlets assembly contig cap3 written 2.8 years ago by seta • 1000
1
vote
1
answer
1.5k
views
1
answer
contig with overlaps. how to circularize?
genome assembly contig circular dna written 2.9 years ago by jolespin • 110 • updated 2.9 years ago by Philipp Bayer ♦ 5.5k
1
vote
1
answer
1.0k
views
1
answer
Nice open source alternative to "contig viewer" in SeqMan Pro
seqman contig paired end written 2.9 years ago by mschmid • 90 • updated 2.9 years ago by Lesley Sitter • 440
3
votes
2
answers
934
views
2
answers
Tool to detect closed contigs in FASTA/FASTQ file
contig close assambly written 2.9 years ago by mschmid • 90
2
votes
1
answer
1.2k
views
1
answer
Split BAM into 1 BAM per contig
contig sam written 3.1 years ago by Marvin • 90 • updated 3.1 years ago by Pierre Lindenbaum ♦ 110k
1
vote
1
answer
1.6k
views
1
answer
Mapping Contigs based on Reference Genome
genome contig mapping written 3.1 years ago by Tanvir Ahamed • 270 • updated 3.1 years ago by h.mon ♦ 16k
0
votes
1
answer
1.2k
views
1
answer
generation of contigs from sanger sequencing
sequence contig written 3.1 years ago by jasbadesha27 • 0 • updated 3.1 years ago by Antonio R. Franco • 3.7k
0
votes
0
answers
1.0k
views
0
answers
How to compare contigs with an existing protein from a species ?
contig sequence blastx dna written 3.4 years ago by carerjose • 0 • updated 3.2 years ago by Biostar ♦♦ 20
2
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0
answers
1.8k
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0
answers
Problem replacing contigs in a dbsnp vcf using Picard SortVcf
vcf picard contig written 3.3 years ago by idedios • 30
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