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2
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201
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3
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How calculate CG content for each contig in an transcript assembly?
cg content assembly contig rna-seq transcriptome written 8 weeks ago by luzglongoria • 20 • updated 8 weeks ago by bioExplorer ♦ 3.7k
4
votes
1
answer
215
views
1
answer
Contig name in SAM file
contig contigs sam contig name written 3 months ago by maryam.95 • 10 • updated 3 months ago by WouterDeCoster ♦ 37k
7
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1
answer
1.1k
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1
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bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 20 months ago by cristian • 200 • updated 8 months ago by Biostar ♦♦ 20
0
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0
answers
260
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0
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Removing unmatched Ns from query sequence based on alignment
genome alignment contig sequence written 10 months ago by Michael Gruenstaeudl • 40
3
votes
1
answer
759
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1
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The --contig option for SPAdes
assembly contig spades written 11 months ago by 934963534 • 10 • updated 11 months ago by dark.lord • 0
6
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1
answer
425
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1
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What is URL of Contig in VCF format?
contig written 11 months ago by 2012secondseason • 10 • updated 11 months ago by RamRS ♦ 20k
0
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0
answers
478
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0
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Local BLAST+ search very slow
contig blast written 12 months ago by dylan.lawrence • 10
2
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2
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1.1k
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2
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How to map NCBI contig positions to chromosome positions
ncbi contig ribosomal grch37.13 written 2.1 years ago by Jackie • 70 • updated 13 months ago by tdmurphy • 160
0
votes
1
answer
494
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1
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How to extract variable nucleotide regions from a list of contigs
extract contig refseq blast written 15 months ago by kayrouz.1 • 0 • updated 15 months ago by bioExplorer ♦ 3.7k
0
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0
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595
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0
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Difference between unlocalized and unplaced fragments
contig chromosomer scaffold scaffolding written 18 months ago by cristian • 200
12
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5
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2.7k
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5 follow
5
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How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 4.2 years ago by Paul • 1.3k • updated 19 months ago by Brian Bushnell ♦ 16k
7
votes
2
answers
1.5k
views
2
answers
Scaffolding with pacbio reads
assembly contig scaffold pacbio written 20 months ago by guillaume.rbt • 530 • updated 20 months ago by shwethacm • 200
2
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0
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573
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0
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dedupe.sh from bbmap excludes contigs with insufficient overlap
assembly contig bbmap dedupe written 20 months ago by cristian • 200
0
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1
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823
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1
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Number of reference sequence contigs in sam/bam header does not match the number in my fasta
fasta bowtie2 contig sam bam written 24 months ago by marcusanaymik • 10 • updated 24 months ago by Brian Bushnell ♦ 16k
1
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0
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1.3k
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0
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Contigs Taxonomy from assembled metagenomes
metagenomics taxonomy metagenome contig written 2.1 years ago by David • 150
0
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0
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845
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0
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Contig's coverage and bam files.
contig coverage bam written 2.4 years ago by Picasa • 390 • updated 2.2 years ago by Biostar ♦♦ 20
1
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0
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1.2k
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0
answers
What is the format of *.contigs.fasta files?
fasta next-gen contig written 2.5 years ago by Na Sed • 260 • updated 2.5 years ago by genomax ♦ 63k
9
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1
answer
2.8k
views
1
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What are contig, singleton read and discordant mate pairs?
singleton reads contig discordant mate pairs written 3.1 years ago by MAPK • 1.4k
1
vote
1
answer
1.9k
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1
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Contig length distribution plotting with R
plotting R contig length written 3.2 years ago by seta • 1.1k • updated 3.2 years ago by h.mon ♦ 24k
0
votes
0
answers
1.0k
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0
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Transcriptome assembly improvement with Soap-denovo trans
assembly contig rna-seq soap-denovo trans written 3.3 years ago by seta • 1.1k
3
votes
2
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3.1k
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2
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Spades Assembler output
assembly contig spades written 3.4 years ago by midox • 210 • updated 3.3 years ago by MathGon • 10
0
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1
answer
1.1k
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1
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contigs alignment with long reads
ngs alignment contig written 3.4 years ago by midox • 210
0
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0
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830
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0
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traversal stats explanations
assembly contig quast traversal minia written 3.5 years ago by pbigbig • 190
0
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0
answers
872
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0
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What is "M" letter in the singlets output file generated by CAP3
singlets assembly contig cap3 written 3.5 years ago by seta • 1.1k
1
vote
1
answer
1.8k
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1
answer
contig with overlaps. how to circularize?
genome assembly contig circular dna written 3.6 years ago by jolespin • 120 • updated 3.6 years ago by Philipp Bayer ♦ 6.0k
1
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1
answer
1.2k
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1
answer
Nice open source alternative to "contig viewer" in SeqMan Pro
seqman contig paired end written 3.6 years ago by mschmid • 90 • updated 3.6 years ago by Lesley Sitter • 460
3
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2
answers
1.1k
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2
answers
Tool to detect closed contigs in FASTA/FASTQ file
contig close assambly written 3.6 years ago by mschmid • 90
2
votes
1
answer
1.5k
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1
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Split BAM into 1 BAM per contig
contig sam written 3.7 years ago by Marvin • 130 • updated 3.7 years ago by Pierre Lindenbaum ♦ 117k
1
vote
1
answer
1.9k
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1
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Mapping Contigs based on Reference Genome
genome contig mapping written 3.8 years ago by Tanvir Ahamed • 270 • updated 3.8 years ago by h.mon ♦ 24k
0
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1
answer
1.6k
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1
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generation of contigs from sanger sequencing
sequence contig written 3.8 years ago by jasbadesha27 • 0 • updated 3.8 years ago by Antonio R. Franco • 4.0k
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