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2
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1
answer
91
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1
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reorder contigs into scaffold?
assembly contig scaffold written 14 days ago by mrj • 20 • updated 14 days ago by ugurcabuk • 130
1
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1
answer
126
views
1
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Contig longer than mitochondrial sequence. Explanation ?
mitochondrial contig written 4 months ago by Picasa • 530 • updated 4 months ago by vmicrobio • 250
1
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0
answers
193
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0
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single contig de novo assembly
de-novo assembly contig rna-seq written 8 months ago by snishtala03 • 30
4
votes
1
answer
364
views
1
answer
Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
spades mummer bacteria contig snp written 10 months ago by LRStar • 190 • updated 10 months ago by Joe ♦ 17k
12
votes
1
answer
4.7k
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1
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What are contig, singleton read and discordant mate pairs?
singleton reads contig discordant mate pairs written 4.4 years ago by MAPK • 1.5k • updated 14 months ago by Biostar ♦♦ 20
1
vote
1
answer
370
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1
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Get protein domain information from nucleotide sequence of assembled contigs?
domain contig proteins hmmpred interprp written 14 months ago by DanielC • 120 • updated 14 months ago by lieven.sterck ♦ 8.0k
0
votes
0
answers
434
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0
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Quast shows different reads count for the same fastq file?
reads fastq contig quast written 15 months ago by DanielC • 120
2
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3
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824
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3
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How calculate CG content for each contig in an transcript assembly?
cg content assembly contig rna-seq transcriptome written 18 months ago by luzglongoria • 40 • updated 18 months ago by lakhujanivijay ♦ 5.1k
4
votes
1
answer
757
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1
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Contig name in SAM file
contig contigs sam contig name written 19 months ago by maryam.95 • 10 • updated 19 months ago by WouterDeCoster ♦ 44k
8
votes
1
answer
1.7k
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1
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bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 3.0 years ago by cristian • 240 • updated 2.0 years ago by Biostar ♦♦ 20
0
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0
answers
493
views
0
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Removing unmatched Ns from query sequence based on alignment
genome alignment contig sequence written 2.2 years ago by Michael G • 40
3
votes
1
answer
1.6k
views
1
answer
The --contig option for SPAdes
assembly contig spades written 2.2 years ago by 934963534 • 20 • updated 2.2 years ago by dark.lord • 30
6
votes
1
answer
758
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1
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What is URL of Contig in VCF format?
contig written 2.2 years ago by 2012secondseason • 20 • updated 2.2 years ago by RamRS ♦ 27k
0
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0
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1.0k
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0
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Local BLAST+ search very slow
contig blast written 2.3 years ago by dylan.lawrence • 20
2
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2
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1.7k
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2
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How to map NCBI contig positions to chromosome positions
ncbi contig ribosomal grch37.13 written 3.4 years ago by Jackie • 70 • updated 2.4 years ago by tdmurphy • 190
0
votes
1
answer
853
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1
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How to extract variable nucleotide regions from a list of contigs
extract contig refseq blast written 2.6 years ago by kayrouz.1 • 0 • updated 2.6 years ago by lakhujanivijay ♦ 5.1k
0
votes
0
answers
949
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0
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Difference between unlocalized and unplaced fragments
contig chromosomer scaffold scaffolding written 2.9 years ago by cristian • 240
12
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5
answers
3.7k
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5 follow
5
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How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 5.5 years ago by Paul • 1.4k • updated 2.9 years ago by Brian Bushnell ♦ 17k
7
votes
2
answers
2.3k
views
2
answers
Scaffolding with pacbio reads
assembly contig scaffold pacbio written 3.0 years ago by guillaume.rbt • 800 • updated 3.0 years ago by shwethacm • 210
2
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0
answers
845
views
0
answers
dedupe.sh from bbmap excludes contigs with insufficient overlap
assembly contig bbmap dedupe written 3.0 years ago by cristian • 240
0
votes
1
answer
1.2k
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1
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Number of reference sequence contigs in sam/bam header does not match the number in my fasta
fasta bowtie2 contig sam bam written 3.3 years ago by marcusanaymik • 10 • updated 3.3 years ago by Brian Bushnell ♦ 17k
1
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0
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2.0k
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0
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Contigs Taxonomy from assembled metagenomes
metagenomics taxonomy metagenome contig written 3.5 years ago by David • 160
0
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0
answers
1.3k
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0
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Contig's coverage and bam files.
contig coverage bam written 3.7 years ago by Picasa • 530 • updated 3.5 years ago by Biostar ♦♦ 20
1
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0
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2.0k
views
0
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What is the format of *.contigs.fasta files?
fasta next-gen contig written 3.8 years ago by Na Sed • 290 • updated 3.8 years ago by genomax ♦ 85k
1
vote
1
answer
2.7k
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1
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Contig length distribution plotting with R
plotting R contig length written 4.5 years ago by seta • 1.3k • updated 4.5 years ago by h.mon ♦ 30k
0
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0
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1.3k
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0
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Transcriptome assembly improvement with Soap-denovo trans
assembly contig rna-seq soap-denovo trans written 4.6 years ago by seta • 1.3k
3
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2
answers
3.5k
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2
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Spades Assembler output
assembly contig spades written 4.7 years ago by midox • 260 • updated 4.7 years ago by MathGon • 10
0
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0
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1.4k
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0
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contigs alignment with long reads
ngs alignment contig written 4.7 years ago by midox • 260
0
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0
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1.1k
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0
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traversal stats explanations
assembly contig quast traversal minia written 4.8 years ago by pbigbig • 200
0
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0
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1.1k
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0
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What is "M" letter in the singlets output file generated by CAP3
singlets assembly contig cap3 written 4.8 years ago by seta • 1.3k
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