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Split Fasta file and rename output files with contig names
fasta contig split written 10 weeks ago by awoods65110 • updated 10 weeks ago by JC12k
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How to determine contig taxonomy from metagenome?
contig taxonomy metagenome identity written 11 weeks ago by Audrey20 • updated 11 weeks ago by lagartija90
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reorder contigs into scaffold?
assembly contig scaffold written 4 months ago by mrj20 • updated 4 months ago by ugurcabuk130
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Contig longer than mitochondrial sequence. Explanation ?
mitochondrial contig written 8 months ago by Picasa560 • updated 8 months ago by vmicrobio250
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Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
spades mummer bacteria contig snp written 14 months ago by LRStar190 • updated 14 months ago by Joe18k
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What are contig, singleton read and discordant mate pairs?
singleton reads contig discordant mate pairs written 4.7 years ago by MAPK1.6k • updated 17 months ago by Biostar ♦♦ 20
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Contig name in SAM file
contig contigs sam contig name written 23 months ago by maryam.9510 • updated 23 months ago by WouterDeCoster44k
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bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 3.3 years ago by cristian250 • updated 2.3 years ago by Biostar ♦♦ 20
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The --contig option for SPAdes
assembly contig spades written 2.5 years ago by 93496353420 • updated 2.5 years ago by dark.lord30
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What is URL of Contig in VCF format?
contig written 2.5 years ago by 2012secondseason30 • updated 2.5 years ago by RamRS30k
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Local BLAST+ search very slow
contig blast written 2.6 years ago by dylan.lawrence20
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How to map NCBI contig positions to chromosome positions
ncbi contig ribosomal grch37.13 written 3.7 years ago by Jackie70 • updated 2.7 years ago by tdmurphy190
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How to extract variable nucleotide regions from a list of contigs
extract contig refseq blast written 2.9 years ago by kayrouz.10 • updated 2.9 years ago by lakhujanivijay5.3k
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How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 5.8 years ago by Paul1.4k • updated 3.2 years ago by Brian Bushnell17k
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Scaffolding with pacbio reads
assembly contig scaffold pacbio written 3.3 years ago by guillaume.rbt830 • updated 3.3 years ago by shwethacm210
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Contig's coverage and bam files.
contig coverage bam written 4.0 years ago by Picasa560 • updated 3.8 years ago by Biostar ♦♦ 20
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What is the format of *.contigs.fasta files?
fasta next-gen contig written 4.1 years ago by Na Sed310 • updated 4.1 years ago by genomax91k
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Contig length distribution plotting with R
plotting R contig length written 4.8 years ago by seta1.4k • updated 4.8 years ago by h.mon31k
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Spades Assembler output
assembly contig spades written 5.0 years ago by midox260 • updated 5.0 years ago by MathGon10
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contigs alignment with long reads
ngs alignment contig written 5.0 years ago by midox260
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