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<prev • 32 results • page 1 of 2 • next >
5
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2
answers
206
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2
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Scaffolding with pacbio reads
assembly contig scaffold pacbio written 5 weeks ago by guillaume.rbt • 290 • updated 4 weeks ago by shwethacm • 150
2
votes
0
answers
137
views
0
answers
dedupe.sh from bbmap excludes contigs with insufficient overlap
assembly contig bbmap dedupe written 5 weeks ago by cristian • 70
5
votes
1
answer
188
views
1
answer
bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 6 weeks ago by cristian • 70
0
votes
1
answer
226
views
1
answer
Number of reference sequence contigs in sam/bam header does not match the number in my fasta
fasta bowtie2 contig sam bam written 4 months ago by marcusanaymik • 10 • updated 4 months ago by Brian Bushnell ♦ 13k
0
votes
0
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268
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0
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How to map NCBI contig positions to chromosome positions
ncbi contig ribosomal grch37.13 written 6 months ago by Jackie • 40 • updated 6 months ago by genomax ♦ 32k
1
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0
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395
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0
answers
Contigs Taxonomy from assembled metagenomes
metagenomics taxonomy metagenome contig written 6 months ago by David • 50
0
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0
answers
320
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0
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Contig's coverage and bam files.
contig coverage bam written 9 months ago by Picasa • 300 • updated 7 months ago by Biostar ♦♦ 20
1
vote
0
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356
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0
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What is the format of *.contigs.fasta files?
fasta next-gen contig written 10 months ago by Na Sed • 250 • updated 10 months ago by genomax ♦ 32k
5
votes
1
answer
851
views
1
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What are contig, singleton read and discordant mate pairs?
singleton reads contig discordant mate pairs written 18 months ago by MAPK • 990
1
vote
1
answer
919
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1
answer
Contig length distribution plotting with R
plotting R contig length written 19 months ago by seta • 920 • updated 19 months ago by h.mon ♦ 8.0k
0
votes
0
answers
623
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0
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Transcriptome assembly improvement with Soap-denovo trans
assembly contig rna-seq soap-denovo trans written 20 months ago by seta • 920
3
votes
2
answers
2.0k
views
2
answers
Spades Assembler output
assembly contig spades written 21 months ago by midox • 180 • updated 21 months ago by MathGon • 10
0
votes
1
answer
560
views
1
answer
contigs alignment with long reads
ngs alignment contig written 21 months ago by midox • 180
0
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0
answers
511
views
0
answers
traversal stats explanations
assembly contig quast traversal minia written 22 months ago by pbigbig • 180
0
votes
0
answers
485
views
0
answers
What is "M" letter in the singlets output file generated by CAP3
singlets assembly contig cap3 written 22 months ago by seta • 920
1
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1
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926
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1
answer
contig with overlaps. how to circularize?
genome assembly contig circular dna written 24 months ago by jolespin • 90 • updated 24 months ago by Philipp Bayer ♦ 4.6k
1
vote
1
answer
750
views
1
answer
Nice open source alternative to "contig viewer" in SeqMan Pro
seqman contig paired end written 24 months ago by mschmid • 90 • updated 24 months ago by Lesley Sitter • 410
3
votes
2
answers
761
views
2
answers
Tool to detect closed contigs in FASTA/FASTQ file
contig close assambly written 2.0 years ago by mschmid • 90
2
votes
1
answer
825
views
1
answer
Split BAM into 1 BAM per contig
contig sam written 2.1 years ago by Marvin • 90 • updated 2.1 years ago by Pierre Lindenbaum ♦ 96k
1
vote
1
answer
1.2k
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1
answer
Mapping Contigs based on Reference Genome
genome contig mapping written 2.2 years ago by Tanvir Ahamed • 220 • updated 2.2 years ago by h.mon ♦ 8.0k
0
votes
1
answer
745
views
1
answer
generation of contigs from sanger sequencing
sequence contig written 2.2 years ago by jasbadesha27 • 0 • updated 2.2 years ago by Antonio R. Franco • 3.4k
0
votes
0
answers
747
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0
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How to compare contigs with an existing protein from a species ?
contig sequence blastx dna written 2.5 years ago by carerjose • 0 • updated 2.3 years ago by Biostar ♦♦ 20
2
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0
answers
1.3k
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0
answers
Problem replacing contigs in a dbsnp vcf using Picard SortVcf
vcf picard contig written 2.3 years ago by idedios • 30
1
vote
1
answer
985
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1
answer
SOAPdenovo: what is the input file of the second step (the command "contig") ?
genome assembly contig soapdenovo written 2.4 years ago by alecloic • 30
3
votes
1
answer
1.2k
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1
answer
Contigs unmapped to reference, Sanger sequencing assembly improvements and plasmid DNA
assembly next-gen contig sequencing written 2.5 years ago by a.a.kechin • 20 • updated 2.5 years ago by rob234king • 530
0
votes
0
answers
479
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0
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Contig linking with specific sequence
assembly contig written 2.5 years ago by jeccy.J • 50
3
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2
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1.3k
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2
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Taxonomic assignments to metagenomic sequences
organism contig sequence metagenome taxonomy written 2.6 years ago by jolespin • 90 • updated 2.6 years ago by iraun • 3.1k
10
votes
4
answers
1.7k
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4
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How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 2.6 years ago by Paul • 620 • updated 2.6 years ago by Matt Shirley ♦ 7.7k
9
votes
2
answers
3.0k
views
2
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How do I choose among velvet assembled contigs with different k (k-mer) values?
velvetg assembly contig velvet written 2.9 years ago by whatup • 30 • updated 2.9 years ago by Adrian Pelin • 2.0k
0
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0
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903
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0
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Contigs of same genes have lots of different bases, How can I understand which is reliable?
assembly contig next-gen alignment written 3.1 years ago by ada • 0 • updated 3.0 years ago by Biostar ♦♦ 20
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