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7
votes
1
answer
934
views
1
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bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 16 months ago by cristian • 180 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
186
views
0
answers
Removing unmatched Ns from query sequence based on alignment
genome alignment contig sequence written 6 months ago by Michael Gruenstaeudl • 20
3
votes
1
answer
511
views
1
answer
The --contig option for SPAdes
assembly contig spades written 7 months ago by 934963534 • 10 • updated 7 months ago by dark.lord • 0
6
votes
1
answer
305
views
1
answer
What is URL of Contig in VCF format?
contig written 7 months ago by 2012secondseason • 10 • updated 7 months ago by RamRS ♦ 19k
0
votes
0
answers
342
views
0
answers
Local BLAST+ search very slow
contig blast written 8 months ago by dylan.lawrence • 10
2
votes
2
answers
927
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2
answers
How to map NCBI contig positions to chromosome positions
ncbi contig ribosomal grch37.13 written 21 months ago by Jackie • 70 • updated 9 months ago by tdmurphy • 110
0
votes
1
answer
418
views
1
answer
How to extract variable nucleotide regions from a list of contigs
extract contig refseq blast written 11 months ago by kayrouz.1 • 0 • updated 11 months ago by Vijay Lakhujani ♦ 3.2k
0
votes
0
answers
464
views
0
answers
Difference between unlocalized and unplaced fragments
contig chromosomer scaffold scaffolding written 14 months ago by cristian • 180
12
votes
5
answers
2.5k
views
5 follow
5
answers
How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 3.9 years ago by Paul • 1.2k • updated 15 months ago by Brian Bushnell ♦ 16k
7
votes
2
answers
1.2k
views
2
answers
Scaffolding with pacbio reads
assembly contig scaffold pacbio written 16 months ago by guillaume.rbt • 460 • updated 16 months ago by shwethacm • 200
2
votes
0
answers
484
views
0
answers
dedupe.sh from bbmap excludes contigs with insufficient overlap
assembly contig bbmap dedupe written 16 months ago by cristian • 180
0
votes
1
answer
732
views
1
answer
Number of reference sequence contigs in sam/bam header does not match the number in my fasta
fasta bowtie2 contig sam bam written 20 months ago by marcusanaymik • 10 • updated 20 months ago by Brian Bushnell ♦ 16k
1
vote
0
answers
1.1k
views
0
answers
Contigs Taxonomy from assembled metagenomes
metagenomics taxonomy metagenome contig written 21 months ago by David • 120
0
votes
0
answers
748
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0
answers
Contig's coverage and bam files.
contig coverage bam written 2.0 years ago by Picasa • 390 • updated 22 months ago by Biostar ♦♦ 20
1
vote
0
answers
977
views
0
answers
What is the format of *.contigs.fasta files?
fasta next-gen contig written 2.2 years ago by Na Sed • 260 • updated 2.2 years ago by genomax ♦ 58k
9
votes
1
answer
2.3k
views
1
answer
What are contig, singleton read and discordant mate pairs?
singleton reads contig discordant mate pairs written 2.8 years ago by MAPK • 1.3k
1
vote
1
answer
1.7k
views
1
answer
Contig length distribution plotting with R
plotting R contig length written 2.9 years ago by seta • 1.0k • updated 2.9 years ago by h.mon ♦ 21k
0
votes
0
answers
961
views
0
answers
Transcriptome assembly improvement with Soap-denovo trans
assembly contig rna-seq soap-denovo trans written 3.0 years ago by seta • 1.0k
3
votes
2
answers
2.9k
views
2
answers
Spades Assembler output
assembly contig spades written 3.0 years ago by midox • 200 • updated 3.0 years ago by MathGon • 10
0
votes
1
answer
966
views
1
answer
contigs alignment with long reads
ngs alignment contig written 3.1 years ago by midox • 200
0
votes
0
answers
764
views
0
answers
traversal stats explanations
assembly contig quast traversal minia written 3.1 years ago by pbigbig • 190
0
votes
0
answers
805
views
0
answers
What is "M" letter in the singlets output file generated by CAP3
singlets assembly contig cap3 written 3.1 years ago by seta • 1.0k
1
vote
1
answer
1.6k
views
1
answer
contig with overlaps. how to circularize?
genome assembly contig circular dna written 3.2 years ago by jolespin • 110 • updated 3.2 years ago by Philipp Bayer ♦ 5.7k
1
vote
1
answer
1.1k
views
1
answer
Nice open source alternative to "contig viewer" in SeqMan Pro
seqman contig paired end written 3.2 years ago by mschmid • 90 • updated 3.2 years ago by Lesley Sitter • 450
3
votes
2
answers
1.0k
views
2
answers
Tool to detect closed contigs in FASTA/FASTQ file
contig close assambly written 3.3 years ago by mschmid • 90
2
votes
1
answer
1.3k
views
1
answer
Split BAM into 1 BAM per contig
contig sam written 3.4 years ago by Marvin • 120 • updated 3.4 years ago by Pierre Lindenbaum ♦ 114k
1
vote
1
answer
1.8k
views
1
answer
Mapping Contigs based on Reference Genome
genome contig mapping written 3.4 years ago by Tanvir Ahamed • 270 • updated 3.4 years ago by h.mon ♦ 21k
0
votes
1
answer
1.4k
views
1
answer
generation of contigs from sanger sequencing
sequence contig written 3.5 years ago by jasbadesha27 • 0 • updated 3.5 years ago by Antonio R. Franco • 3.9k
0
votes
0
answers
1.1k
views
0
answers
How to compare contigs with an existing protein from a species ?
contig sequence blastx dna written 3.7 years ago by carerjose • 0 • updated 3.6 years ago by Biostar ♦♦ 20
2
votes
0
answers
2.0k
views
0
answers
Problem replacing contigs in a dbsnp vcf using Picard SortVcf
vcf picard contig written 3.6 years ago by idedios • 30
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