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4
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1
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164
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1
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Contig name in SAM file
contig contigs sam contig name written 5 weeks ago by maryam.95 • 10 • updated 5 weeks ago by WouterDeCoster ♦ 35k
7
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1
answer
1.0k
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1
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bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 18 months ago by cristian • 180 • updated 6 months ago by Biostar ♦♦ 20
0
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0
answers
224
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0
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Removing unmatched Ns from query sequence based on alignment
genome alignment contig sequence written 8 months ago by Michael Gruenstaeudl • 40
3
votes
1
answer
620
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1
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The --contig option for SPAdes
assembly contig spades written 9 months ago by 934963534 • 10 • updated 9 months ago by dark.lord • 0
6
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1
answer
355
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1
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What is URL of Contig in VCF format?
contig written 9 months ago by 2012secondseason • 10 • updated 9 months ago by RamRS ♦ 20k
0
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0
answers
411
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0
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Local BLAST+ search very slow
contig blast written 10 months ago by dylan.lawrence • 10
2
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2
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1.0k
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2
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How to map NCBI contig positions to chromosome positions
ncbi contig ribosomal grch37.13 written 23 months ago by Jackie • 70 • updated 11 months ago by tdmurphy • 160
0
votes
1
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448
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1
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How to extract variable nucleotide regions from a list of contigs
extract contig refseq blast written 13 months ago by kayrouz.1 • 0 • updated 13 months ago by Vijay Lakhujani ♦ 3.5k
0
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0
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521
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0
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Difference between unlocalized and unplaced fragments
contig chromosomer scaffold scaffolding written 16 months ago by cristian • 180
12
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5
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2.6k
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5 follow
5
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How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 4.0 years ago by Paul • 1.2k • updated 17 months ago by Brian Bushnell ♦ 16k
7
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2
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1.4k
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2
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Scaffolding with pacbio reads
assembly contig scaffold pacbio written 18 months ago by guillaume.rbt • 480 • updated 18 months ago by shwethacm • 200
2
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0
answers
525
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0
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dedupe.sh from bbmap excludes contigs with insufficient overlap
assembly contig bbmap dedupe written 18 months ago by cristian • 180
0
votes
1
answer
768
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1
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Number of reference sequence contigs in sam/bam header does not match the number in my fasta
fasta bowtie2 contig sam bam written 22 months ago by marcusanaymik • 10 • updated 22 months ago by Brian Bushnell ♦ 16k
1
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0
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1.2k
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0
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Contigs Taxonomy from assembled metagenomes
metagenomics taxonomy metagenome contig written 23 months ago by David • 120
0
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0
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790
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0
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Contig's coverage and bam files.
contig coverage bam written 2.2 years ago by Picasa • 390 • updated 2.0 years ago by Biostar ♦♦ 20
1
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0
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1.1k
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0
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What is the format of *.contigs.fasta files?
fasta next-gen contig written 2.3 years ago by Na Sed • 260 • updated 2.3 years ago by genomax ♦ 60k
9
votes
1
answer
2.5k
views
1
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What are contig, singleton read and discordant mate pairs?
singleton reads contig discordant mate pairs written 2.9 years ago by MAPK • 1.3k
1
vote
1
answer
1.8k
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1
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Contig length distribution plotting with R
plotting R contig length written 3.0 years ago by seta • 1.1k • updated 3.0 years ago by h.mon ♦ 22k
0
votes
0
answers
984
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0
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Transcriptome assembly improvement with Soap-denovo trans
assembly contig rna-seq soap-denovo trans written 3.1 years ago by seta • 1.1k
3
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2
answers
3.0k
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2
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Spades Assembler output
assembly contig spades written 3.2 years ago by midox • 200 • updated 3.2 years ago by MathGon • 10
0
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1
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1.0k
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1
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contigs alignment with long reads
ngs alignment contig written 3.2 years ago by midox • 200
0
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0
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792
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0
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traversal stats explanations
assembly contig quast traversal minia written 3.3 years ago by pbigbig • 190
0
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0
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836
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0
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What is "M" letter in the singlets output file generated by CAP3
singlets assembly contig cap3 written 3.3 years ago by seta • 1.1k
1
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1
answer
1.7k
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1
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contig with overlaps. how to circularize?
genome assembly contig circular dna written 3.4 years ago by jolespin • 110 • updated 3.4 years ago by Philipp Bayer ♦ 5.9k
1
vote
1
answer
1.2k
views
1
answer
Nice open source alternative to "contig viewer" in SeqMan Pro
seqman contig paired end written 3.4 years ago by mschmid • 90 • updated 3.4 years ago by Lesley Sitter • 460
3
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2
answers
1.0k
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2
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Tool to detect closed contigs in FASTA/FASTQ file
contig close assambly written 3.4 years ago by mschmid • 90
2
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1
answer
1.4k
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1
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Split BAM into 1 BAM per contig
contig sam written 3.5 years ago by Marvin • 120 • updated 3.5 years ago by Pierre Lindenbaum ♦ 116k
1
vote
1
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1.9k
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1
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Mapping Contigs based on Reference Genome
genome contig mapping written 3.6 years ago by Tanvir Ahamed • 270 • updated 3.6 years ago by h.mon ♦ 22k
0
votes
1
answer
1.5k
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1
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generation of contigs from sanger sequencing
sequence contig written 3.6 years ago by jasbadesha27 • 0 • updated 3.6 years ago by Antonio R. Franco • 3.9k
0
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0
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1.1k
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0
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How to compare contigs with an existing protein from a species ?
contig sequence blastx dna written 3.9 years ago by carerjose • 0 • updated 3.7 years ago by Biostar ♦♦ 20
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