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0
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2
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187
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2
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Split Fasta file and rename output files with contig names
fasta contig split written 10 weeks ago by awoods6511 • 0 • updated 10 weeks ago by JC ♦ 12k
6
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3
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176
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6 follow
3
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How to determine contig taxonomy from metagenome?
contig taxonomy metagenome identity written 11 weeks ago by Audrey • 20 • updated 11 weeks ago by lagartija • 90
2
votes
1
answer
143
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1
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reorder contigs into scaffold?
assembly contig scaffold written 4 months ago by mrj • 20 • updated 4 months ago by ugurcabuk • 130
1
vote
1
answer
156
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1
answer
Contig longer than mitochondrial sequence. Explanation ?
mitochondrial contig written 8 months ago by Picasa • 560 • updated 8 months ago by vmicrobio • 250
1
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0
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232
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0
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single contig de novo assembly
de-novo assembly contig rna-seq written 11 months ago by snishtala03 • 40
4
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1
answer
446
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1
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Assemble bacterial .fastq files and find differences (SPAdes followed by MUMmer)
spades mummer bacteria contig snp written 14 months ago by LRStar • 190 • updated 14 months ago by Joe ♦ 18k
13
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1
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5.1k
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1
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What are contig, singleton read and discordant mate pairs?
singleton reads contig discordant mate pairs written 4.7 years ago by MAPK • 1.6k • updated 17 months ago by Biostar ♦♦ 20
1
vote
1
answer
410
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1
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Get protein domain information from nucleotide sequence of assembled contigs?
domain contig proteins hmmpred interprp written 18 months ago by DanielC • 130 • updated 18 months ago by lieven.sterck ♦ 8.7k
0
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0
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508
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0
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Quast shows different reads count for the same fastq file?
reads fastq contig quast written 19 months ago by DanielC • 130
2
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3
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1.0k
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3
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How calculate CG content for each contig in an transcript assembly?
cg content assembly contig rna-seq transcriptome written 21 months ago by luzglongoria • 40 • updated 21 months ago by lakhujanivijay ♦ 5.3k
4
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1
answer
987
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1
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Contig name in SAM file
contig contigs sam contig name written 23 months ago by maryam.95 • 10 • updated 23 months ago by WouterDeCoster ♦ 44k
8
votes
1
answer
1.8k
views
1
answer
bwa mem misaligns my contigs to the reference by a few bases
contig alignment bwa mem bwa bwt written 3.3 years ago by cristian • 250 • updated 2.3 years ago by Biostar ♦♦ 20
0
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0
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532
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0
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Removing unmatched Ns from query sequence based on alignment
genome alignment contig sequence written 2.5 years ago by Michael G • 50
3
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1
answer
1.8k
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1
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The --contig option for SPAdes
assembly contig spades written 2.5 years ago by 934963534 • 20 • updated 2.5 years ago by dark.lord • 30
6
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1
answer
832
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1
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What is URL of Contig in VCF format?
contig written 2.5 years ago by 2012secondseason • 30 • updated 2.5 years ago by RamRS ♦ 30k
0
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0
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1.2k
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0
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Local BLAST+ search very slow
contig blast written 2.6 years ago by dylan.lawrence • 20
2
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2
answers
1.9k
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2
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How to map NCBI contig positions to chromosome positions
ncbi contig ribosomal grch37.13 written 3.7 years ago by Jackie • 70 • updated 2.7 years ago by tdmurphy • 190
0
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1
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925
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1
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How to extract variable nucleotide regions from a list of contigs
extract contig refseq blast written 2.9 years ago by kayrouz.1 • 0 • updated 2.9 years ago by lakhujanivijay ♦ 5.3k
0
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0
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1.0k
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0
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Difference between unlocalized and unplaced fragments
contig chromosomer scaffold scaffolding written 3.2 years ago by cristian • 250
12
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5
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4.0k
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5 follow
5
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How to extract contigs from FASTA file which contains specific sequence
fasta find extraction contig written 5.8 years ago by Paul • 1.4k • updated 3.2 years ago by Brian Bushnell ♦ 17k
7
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2
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2.4k
views
2
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Scaffolding with pacbio reads
assembly contig scaffold pacbio written 3.3 years ago by guillaume.rbt • 830 • updated 3.3 years ago by shwethacm • 210
2
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0
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892
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0
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dedupe.sh from bbmap excludes contigs with insufficient overlap
assembly contig bbmap dedupe written 3.3 years ago by cristian • 250
0
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1
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1.3k
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1
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Number of reference sequence contigs in sam/bam header does not match the number in my fasta
fasta bowtie2 contig sam bam written 3.6 years ago by marcusanaymik • 10 • updated 3.6 years ago by Brian Bushnell ♦ 17k
1
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0
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2.2k
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0
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Contigs Taxonomy from assembled metagenomes
metagenomics taxonomy metagenome contig written 3.8 years ago by David • 180
0
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0
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1.4k
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0
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Contig's coverage and bam files.
contig coverage bam written 4.0 years ago by Picasa • 560 • updated 3.8 years ago by Biostar ♦♦ 20
1
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0
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2.2k
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0
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What is the format of *.contigs.fasta files?
fasta next-gen contig written 4.1 years ago by Na Sed • 310 • updated 4.1 years ago by genomax ♦ 91k
1
vote
1
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2.8k
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1
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Contig length distribution plotting with R
plotting R contig length written 4.8 years ago by seta • 1.4k • updated 4.8 years ago by h.mon ♦ 31k
0
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1.4k
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0
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Transcriptome assembly improvement with Soap-denovo trans
assembly contig rna-seq soap-denovo trans written 4.9 years ago by seta • 1.4k
3
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2
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3.7k
views
2
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Spades Assembler output
assembly contig spades written 5.0 years ago by midox • 260 • updated 5.0 years ago by MathGon • 10
0
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0
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1.4k
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0
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contigs alignment with long reads
ngs alignment contig written 5.0 years ago by midox • 260
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