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<prev • 119 results • page 1 of 4 • next >
6
votes
2
answers
278
views
2
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Removing small contigs from fasta files
perl assembly contigs fasta written 4 months ago by subrahmanya • 0 • updated 4 weeks ago by mejait99 • 20
0
votes
0
answers
119
views
0
answers
Assembly size decreased after using SSPACE for scaffolding
sspace contigs assembly size scaffolding written 9 weeks ago by deepti1rao • 30 • updated 7 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
97
views
0
answers
Annotation of contigs through Genome assembly
genome assembly contigs annotation written 10 weeks ago by Chikitow • 0
4
votes
2
answers
143
views
2
answers
Counting Contigs in Fasta/GBK File
genome contigs checkm written 10 weeks ago by biohacker_tobe • 40 • updated 10 weeks ago by Joe ♦ 16k
2
votes
1
answer
224
views
1
answer
Mapping to contigs or predicted genes, for quantitative gene analysis (DNAseq)
dnaseq fastq alignment contigs map written 4 months ago by allerdrengen55 • 20 • updated 4 months ago by Asaf ♦ 7.3k
0
votes
0
answers
133
views
0
answers
Assemble multiple contigs to single
contigs microbial pacbio genome assembly written 4 months ago by star715 • 20
0
votes
1
answer
216
views
1
answer
Convert abyss scaffolds to contigs
contigs abyss written 4 months ago by jm440 • 0 • updated 4 months ago by h.mon ♦ 29k
3
votes
1
answer
836
views
1
answer
Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
assembly spades quast contigs written 9 months ago by bioinforesearchquestions • 280 • updated 9 months ago by h.mon ♦ 29k
5
votes
1
answer
670
views
5 follow
1
answer
Merge contigs in fasta file
fasta merge contigs written 10 months ago by Rubal • 310 • updated 10 months ago by finswimmer ♦ 13k
0
votes
1
answer
643
views
1
answer
Prokka setupdb issue
annotation contigs prokka assembly written 12 months ago by DanielC • 120
0
votes
0
answers
235
views
0
answers
Gaps in sequenced DNA consensus generated from contigs
gaps consensus contigs written 12 months ago by DanielC • 120
2
votes
1
answer
756
views
1
answer
Binning Tools for Long Reads/Contigs
long reads metagenomics contigs binning written 13 months ago by vijinim • 100
9
votes
3
answers
3.6k
views
8 follow
3
answers
Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 2.2 years ago by fhsantanna • 470 • updated 12 months ago by bhclement • 0
2
votes
1
answer
401
views
1
answer
Where can I find publicly available metagenomics contig datsets?
metagenomics contigs datasets written 14 months ago by vijinim • 100 • updated 13 months ago by Jonathanjacobs • 240
1
vote
1
answer
896
views
1
answer
assembly of contigs into scaffolds
assembly contigs scaffolds written 15 months ago by M.Nadeem Khan • 0 • updated 15 months ago by shubhra.bhattacharya • 120
3
votes
2
answers
411
views
2
answers
Is there a standard file format for anchored contigs?
genome assembly linkage map contigs anchor contigs written 15 months ago by brogroh • 0 • updated 15 months ago by cmdcolin • 1.3k
0
votes
0
answers
705
views
0
answers
How to get a consensus of the contigs obtained from an assembler like spades?
consensus spades contigs written 16 months ago by DanielC • 120
4
votes
1
answer
613
views
1
answer
Contig name in SAM file
contig contigs sam contig name written 16 months ago by maryam.95 • 10 • updated 16 months ago by WouterDeCoster ♦ 43k
0
votes
0
answers
516
views
0
answers
How to decide how many Iontorrent reads to run for contig assembly using Mira assembler?
reads mira assembler iointorrent contigs written 16 months ago by DanielC • 120 • updated 16 months ago by WouterDeCoster ♦ 43k
2
votes
1
answer
927
views
1
answer
GATK BaseRecalibrator No overlapping contigs found ERROR
reads gatk contigs baserecalibrator written 17 months ago by marongiu.luigi • 490 • updated 17 months ago by Pierre Lindenbaum ♦ 127k
1
vote
0
answers
749
views
0
answers
Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 19 months ago by vitorgomesbio • 0 • updated 19 months ago by Biostar ♦♦ 20
2
votes
2
answers
750
views
2
answers
Order of contigs
contigs written 19 months ago by agata88 • 790 • updated 19 months ago by piet • 1.7k
3
votes
0
answers
676
views
0
answers
Tool to do Variant calling from contigs data
variant calling contigs written 21 months ago by de.mecquenem.ninon • 10
0
votes
0
answers
921
views
0
answers
SSPACE for scaffolding
contigs sspace insert size bbmap scaffolding written 23 months ago by deepti1rao • 30 • updated 23 months ago by RamRS ♦ 26k
2
votes
1
answer
695
views
1
answer
Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 23 months ago by deepti1rao • 30 • updated 23 months ago by h.mon ♦ 29k
1
vote
0
answers
699
views
0
answers
Annotating and predicting the genomic region of a sequenced phage
contigs phage blast tail protein written 2.0 years ago by DanielC • 120 • updated 23 months ago by Biostar ♦♦ 20
4
votes
2
answers
1.0k
views
2
answers
Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
trinity contigs rna-seq assembly written 2.3 years ago by BioBing • 100 • updated 2.3 years ago by jwhan.algae • 10
2
votes
1
answer
944
views
1
answer
Determining a complete genome from contigs
complete genome contigs written 2.4 years ago by Optimist • 90 • updated 2.3 years ago by ropolocan • 640
8
votes
1
answer
1.2k
views
1
answer
Can 167 contigs in my genome be stitched in to one fasta sequence
fasta genome contigs bioinformatics written 2.7 years ago by Optimist • 90 • updated 2.7 years ago by Michael Dondrup ♦ 47k
11
votes
1
answer
2.2k
views
5 follow
1
answer
Merge Scaffolds From Different Individuals?
consensus assembly contigs written 7.6 years ago by Gabriel R. • 2.7k
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