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Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
assembly spades quast contigs written 2 days ago by bioinforesearchquestions • 230 • updated 2 days ago by h.mon ♦ 26k
2
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1
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163
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1
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Merge contigs in fasta file
fasta merge contigs written 5 weeks ago by Rubal • 220 • updated 5 weeks ago by finswimmer ♦ 11k
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1
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203
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1
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Prokka setupdb issue
annotation contigs prokka assembly written 10 weeks ago by DanielC • 80
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0
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106
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Gaps in sequenced DNA consensus generated from contigs
gaps consensus contigs written 12 weeks ago by DanielC • 80
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1
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323
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1
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Binning Tools for Long Reads/Contigs
long reads metagenomics contigs binning written 3 months ago by vijinim • 90
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8 follow
3
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 17 months ago by fhsantanna • 440 • updated 3 months ago by bhclement • 0
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1
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249
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Where can I find publicly available metagenomics contig datsets?
metagenomics contigs datasets written 5 months ago by vijinim • 90 • updated 3 months ago by Jonathanjacobs • 210
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365
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assembly of contigs into scaffolds
assembly contigs scaffolds written 5 months ago by M.Nadeem Khan • 0 • updated 5 months ago by shubhra.bhattacharya • 120
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2
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251
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2
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Is there a standard file format for anchored contigs?
genome assembly linkage map contigs anchor contigs written 5 months ago by brogroh • 0 • updated 5 months ago by cmdcolin • 1.2k
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376
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How to get a consensus of the contigs obtained from an assembler like spades?
consensus spades contigs written 6 months ago by DanielC • 80
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1
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290
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1
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Contig name in SAM file
contig contigs sam contig name written 6 months ago by maryam.95 • 10 • updated 6 months ago by WouterDeCoster ♦ 39k
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326
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How to decide how many Iontorrent reads to run for contig assembly using Mira assembler?
reads mira assembler iointorrent contigs written 6 months ago by DanielC • 80 • updated 6 months ago by WouterDeCoster ♦ 39k
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483
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GATK BaseRecalibrator No overlapping contigs found ERROR
reads gatk contigs baserecalibrator written 8 months ago by marongiu.luigi • 380 • updated 8 months ago by Pierre Lindenbaum ♦ 120k
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492
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Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 9 months ago by vitorgomesbio • 0 • updated 9 months ago by Biostar ♦♦ 20
2
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2
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497
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2
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Order of contigs
contigs written 9 months ago by agata88 • 790 • updated 9 months ago by piet • 1.7k
3
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386
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0
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Tool to do Variant calling from contigs data
variant calling contigs written 12 months ago by de.mecquenem.ninon • 10
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562
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SSPACE for scaffolding
contigs sspace insert size bbmap scaffolding written 13 months ago by deepti1rao • 20 • updated 13 months ago by RamRS ♦ 22k
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1
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489
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1
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Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 13 months ago by deepti1rao • 20 • updated 13 months ago by h.mon ♦ 26k
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481
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Annotating and predicting the genomic region of a sequenced phage
contigs phage blast tail protein written 15 months ago by DanielC • 80 • updated 14 months ago by Biostar ♦♦ 20
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2
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Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
trinity contigs rna-seq assembly written 18 months ago by BioBing • 100 • updated 18 months ago by jwhan.algae • 0
2
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1
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718
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Determining a complete genome from contigs
complete genome contigs written 19 months ago by Optimist • 60 • updated 18 months ago by ropolocan • 520
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958
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Can 167 contigs in my genome be stitched in to one fasta sequence
fasta genome contigs bioinformatics written 22 months ago by Optimist • 60 • updated 22 months ago by Michael Dondrup ♦ 46k
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5 follow
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Merge Scaffolds From Different Individuals?
consensus assembly contigs written 6.8 years ago by Gabriel R. • 2.6k
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1
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592
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Capturing whole gene sequences from WGS metagenomics sample
assembly metagenomics contigs binning written 24 months ago by Lina F • 150 • updated 24 months ago by Sej Modha ♦ 4.2k
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1
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591
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Is there any tool to convert a contig to illumina reads?
assembly contigs illumina written 2.0 years ago by m.koohi.m • 110
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Difference between read and contig based taxonomic classification
reads classification contigs taxonomic written 2.1 years ago by BAGeno • 130 • updated 2.0 years ago by Sej Modha ♦ 4.2k
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Reference guided assembly of contigs
assembly tools bacteria contigs reference written 2.1 years ago by hman6.2.91 • 0
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5 follow
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How to assemble contigs?
assembly contigs denovo sequencing written 2.1 years ago by Paul • 80 • updated 2.1 years ago by vmicrobio • 240
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636
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Split BAM file into parts with headers rebuilt
bam contigs rna-seq split written 2.1 years ago by viktorfeketa • 20
2
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929
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5 follow
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How to identify the contigs for each predicted cds sequences?
genome augustus output contigs cds written 2.2 years ago by mirza • 80 • updated 2.2 years ago by jrj.healey ♦ 12k
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