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Where can I find publicly available metagenomics contig datsets?
metagenomics contigs datasets written 4 weeks ago by vijinim • 50 • updated 1 day ago by finswimmer ♦ 9.9k
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160
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assembly of contigs into scaffolds
assembly contigs scaffolds written 6 weeks ago by M.Nadeem Khan • 0 • updated 6 weeks ago by shubhra.bhattacharya • 120
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2
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156
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Is there a standard file format for anchored contigs?
genome assembly linkage map contigs anchor contigs written 7 weeks ago by brogroh • 0 • updated 7 weeks ago by cmdcolin • 1.1k
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181
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How to get a consensus of the contigs obtained from an assembler like spades?
consensus spades contigs written 10 weeks ago by DK • 80
4
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1
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198
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Contig name in SAM file
contig contigs sam contig name written 10 weeks ago by maryam.95 • 10 • updated 10 weeks ago by WouterDeCoster ♦ 36k
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209
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How to decide how many Iontorrent reads to run for contig assembly using Mira assembler?
reads mira assembler iointorrent contigs written 11 weeks ago by DK • 80 • updated 11 weeks ago by WouterDeCoster ♦ 36k
2
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1
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251
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GATK BaseRecalibrator No overlapping contigs found ERROR
reads gatk contigs baserecalibrator written 4 months ago by marongiu.luigi • 360 • updated 4 months ago by Pierre Lindenbaum ♦ 116k
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377
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Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 5 months ago by vitorgomesbio • 0 • updated 5 months ago by Biostar ♦♦ 20
2
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2
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321
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Order of contigs
contigs written 5 months ago by agata88 • 760 • updated 5 months ago by piet • 1.6k
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291
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Tool to do Variant calling from contigs data
variant calling contigs written 8 months ago by de.mecquenem.ninon • 10
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373
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SSPACE for scaffolding
contigs sspace insert size bbmap scaffolding written 9 months ago by deepti1rao • 20 • updated 9 months ago by RamRS ♦ 20k
2
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1
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367
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Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 9 months ago by deepti1rao • 20 • updated 9 months ago by h.mon ♦ 23k
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Annotating and predicting the genomic region of a sequenced phage
contigs phage blast tail protein written 11 months ago by DK • 80 • updated 10 months ago by Biostar ♦♦ 20
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7 follow
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 13 months ago by fhsantanna • 430
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2
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Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
trinity contigs rna-seq assembly written 14 months ago by BioBing • 100 • updated 14 months ago by jwhan.algae • 0
2
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1
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590
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1
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Determining a complete genome from contigs
complete genome contigs written 15 months ago by Optimist • 40 • updated 14 months ago by ropolocan • 500
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1
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Can 167 contigs in my genome be stitched in to one fasta sequence
fasta genome contigs bioinformatics written 18 months ago by Optimist • 40 • updated 18 months ago by Michael Dondrup ♦ 45k
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5 follow
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Merge Scaffolds From Different Individuals?
consensus assembly contigs written 6.5 years ago by Gabriel R. • 2.5k
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512
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Capturing whole gene sequences from WGS metagenomics sample
assembly metagenomics contigs binning written 20 months ago by Lina F • 150 • updated 20 months ago by Sej Modha ♦ 4.0k
6
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526
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Is there any tool to convert a contig to illumina reads?
assembly contigs illumina written 20 months ago by m.koohi.m • 90
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1
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855
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Difference between read and contig based taxonomic classification
reads classification contigs taxonomic written 20 months ago by BAGeno • 110 • updated 20 months ago by Sej Modha ♦ 4.0k
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1.8k
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Reference guided assembly of contigs
assembly tools bacteria contigs reference written 21 months ago by hman6.2.91 • 0
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5 follow
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How to assemble contigs?
assembly contigs denovo sequencing written 21 months ago by Paul • 70 • updated 21 months ago by vmicrobio • 240
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564
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Split BAM file into parts with headers rebuilt
bam contigs rna-seq split written 21 months ago by viktorfeketa • 0
2
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5 follow
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How to identify the contigs for each predicted cds sequences?
genome augustus output contigs cds written 22 months ago by mirza • 80 • updated 22 months ago by jrj.healey ♦ 10k
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How Can I Increase The Length Of Existing Genome Contigs Using Paired-End Reads?
assembly contigs genomics scaffolding written 6.0 years ago by aswad87 • 0 • updated 2.0 years ago by Biostar ♦♦ 20
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Can Scaffolds overlap?
radseq contigs scaffolds written 2.1 years ago by beausoleilmo • 230
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GATK Haplotype Caller
gatk next-gen haplotype contigs caller written 2.3 years ago by plink_9857 • 40 • updated 2.1 years ago by Biostar ♦♦ 20
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How to determine number of unigenes from conigs (De Novo Assembly developed Trinity)
gene assembly contigs rna-seq unigene written 2.2 years ago by bilal.sarwar • 0
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564
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Causes of missing genes in de novo assembed resequenced bacteria
genome assembly bacteria contigs written 2.3 years ago by f2369583 • 10
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