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Mapping to contigs or predicted genes, for quantitative gene analysis (DNAseq)
dnaseq fastq alignment contigs map written 6 days ago by allerdrengen55 • 20 • updated 6 days ago by Asaf ♦ 6.5k
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Assemble multiple contigs to single
contigs microbial pacbio genome assembly written 10 days ago by star715 • 0
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Convert abyss scaffolds to contigs
contigs abyss written 10 days ago by jm440 • 0 • updated 10 days ago by h.mon ♦ 28k
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Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
assembly spades quast contigs written 5 months ago by bioinforesearchquestions • 270 • updated 5 months ago by h.mon ♦ 28k
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Merge contigs in fasta file
fasta merge contigs written 6 months ago by Rubal • 250 • updated 6 months ago by finswimmer ♦ 12k
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Prokka setupdb issue
annotation contigs prokka assembly written 7 months ago by DanielC • 100
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Gaps in sequenced DNA consensus generated from contigs
gaps consensus contigs written 7 months ago by DanielC • 100
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Binning Tools for Long Reads/Contigs
long reads metagenomics contigs binning written 8 months ago by vijinim • 100
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8 follow
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Criteria for filtering contigs after spades assembly
assembly spades contigs filtering written 22 months ago by fhsantanna • 440 • updated 8 months ago by bhclement • 0
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Where can I find publicly available metagenomics contig datsets?
metagenomics contigs datasets written 10 months ago by vijinim • 100 • updated 8 months ago by Jonathanjacobs • 230
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assembly of contigs into scaffolds
assembly contigs scaffolds written 10 months ago by M.Nadeem Khan • 0 • updated 10 months ago by shubhra.bhattacharya • 120
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Is there a standard file format for anchored contigs?
genome assembly linkage map contigs anchor contigs written 10 months ago by brogroh • 0 • updated 10 months ago by cmdcolin • 1.3k
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How to get a consensus of the contigs obtained from an assembler like spades?
consensus spades contigs written 11 months ago by DanielC • 100
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Contig name in SAM file
contig contigs sam contig name written 11 months ago by maryam.95 • 10 • updated 11 months ago by WouterDeCoster ♦ 42k
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How to decide how many Iontorrent reads to run for contig assembly using Mira assembler?
reads mira assembler iointorrent contigs written 11 months ago by DanielC • 100 • updated 11 months ago by WouterDeCoster ♦ 42k
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GATK BaseRecalibrator No overlapping contigs found ERROR
reads gatk contigs baserecalibrator written 13 months ago by marongiu.luigi • 420 • updated 13 months ago by Pierre Lindenbaum ♦ 124k
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Thousands of contigs in E.coli assembly
genome assembly contigs prokka written 14 months ago by vitorgomesbio • 0 • updated 14 months ago by Biostar ♦♦ 20
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Order of contigs
contigs written 14 months ago by agata88 • 790 • updated 14 months ago by piet • 1.7k
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Tool to do Variant calling from contigs data
variant calling contigs written 17 months ago by de.mecquenem.ninon • 10
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SSPACE for scaffolding
contigs sspace insert size bbmap scaffolding written 18 months ago by deepti1rao • 30 • updated 18 months ago by RamRS ♦ 24k
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Continuous alignment of contigs with reference using blast /blat
alignment contigs blat written 18 months ago by deepti1rao • 30 • updated 18 months ago by h.mon ♦ 28k
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Annotating and predicting the genomic region of a sequenced phage
contigs phage blast tail protein written 20 months ago by DanielC • 100 • updated 19 months ago by Biostar ♦♦ 20
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Contig cutoff of 300 bp - why? (Trinity transcriptome assembly)
trinity contigs rna-seq assembly written 23 months ago by BioBing • 100 • updated 23 months ago by jwhan.algae • 0
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Determining a complete genome from contigs
complete genome contigs written 2.0 years ago by Optimist • 70 • updated 23 months ago by ropolocan • 600
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Can 167 contigs in my genome be stitched in to one fasta sequence
fasta genome contigs bioinformatics written 2.3 years ago by Optimist • 70 • updated 2.3 years ago by Michael Dondrup ♦ 46k
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Merge Scaffolds From Different Individuals?
consensus assembly contigs written 7.3 years ago by Gabriel R. • 2.6k
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Capturing whole gene sequences from WGS metagenomics sample
assembly metagenomics contigs binning written 2.4 years ago by Lina F • 160 • updated 2.4 years ago by Sej Modha ♦ 4.5k
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Is there any tool to convert a contig to illumina reads?
assembly contigs illumina written 2.4 years ago by m.koohi.m • 110
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Difference between read and contig based taxonomic classification
reads classification contigs taxonomic written 2.5 years ago by BAGeno • 160 • updated 2.4 years ago by Sej Modha ♦ 4.5k
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Reference guided assembly of contigs
assembly tools bacteria contigs reference written 2.5 years ago by hman6.2.91 • 0
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