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3
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5 follow
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Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 25 days ago by bisansamara • 10 • updated 25 days ago by Tao • 220
166
votes
1
answer
36k
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116 follow
1
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Tutorial: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
tutorial coordinates written 4.7 years ago by Obi Griffith ♦ 16k
0
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0
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229
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0
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Retrieve genomic coordinates (locus start, locus end) from blastn hits?
locus coordinates blastn reciprocal best hits written 4 months ago by sombrajo92 • 0 • updated 10 weeks ago by Biostar ♦♦ 20
0
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1
answer
135
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1
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Blast subject coordinates
coordinates subject blast written 11 weeks ago by deepti1rao • 0 • updated 11 weeks ago by Ram ♦ 15k
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0
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124
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fantom5 enhancers GRCh38
fantom5 R enhancers coordinates genomics written 12 weeks ago by Pin.Bioinf • 70
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0
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145
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how to get intergene coordinates for a single chromosome?
bedtools intersect intergene coordinates written 12 weeks ago by Zee_S • 20
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1
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1
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Finding hg19 coordinates for primers to make BED file
primers coordinates hg19 written 2.5 years ago by adnan.haider.ra • 10 • updated 3 months ago by bioinfo89 • 10
140
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3
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67k
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85 follow
3
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Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 5.4 years ago by Malachi Griffith ♦ 16k
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6
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10 follow
6
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Is There An Easy Way Of Getting Gene Symbols From Genomic Coordinates?
gene coordinates written 5.0 years ago by merajazizmeraj • 20 • updated 3 months ago by Roman Valls Guimerà • 500
24
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6
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11k
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12 follow
6
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Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
genome ensembl coordinates mapping ucsc written 6.7 years ago by Ryan D • 3.3k • updated 6 months ago by ericrkofman • 0
1
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2
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2
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Mutation Taster Gdna Coordinates
coordinates mutation written 5.8 years ago by jp.of.mars • 0 • updated 8 months ago by Biostar ♦♦ 20
9
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1
answer
383
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7 follow
1
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Data Mining from my Genomic Coordinates
vcf ngs coordinates database sql written 9 months ago by Paul • 1.1k • updated 8 months ago by Kevin Blighe ♦ 23k
32
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3
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15k
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9 follow
3
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Exon Coordinates Of Hg19 Genome Download
exon coordinates human hg written 7.3 years ago by Neeraj • 150 • updated 9 months ago by Biostar ♦♦ 20
2
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1
answer
392
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1
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[hg19] Reading genes with CCDS
grch37 coordinates ccds hg19 written 10 months ago by mollitz • 10 • updated 10 months ago by Satyajeet Khare • 1.3k
2
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1
answer
1.9k
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1
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Can One Use The Ensembl Api To Retrieve Multiple Alignment Between The 46 Vertebrate Species
ensembl alignment coordinates written 6.0 years ago by bingyu19821270 • 40 • updated 13 months ago by Biostar ♦♦ 20
21
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5
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10k
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9 follow
5
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How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 7.3 years ago by Sakshi • 20 • updated 14 months ago by Biostar ♦♦ 20
6
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1
answer
546
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5 follow
1
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Construct a gene arrow map to show the gene features
annotation coordinates gene map written 15 months ago by utkarsh.sood • 30 • updated 15 months ago by Pierre Lindenbaum ♦ 109k
1
vote
1
answer
962
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1
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Variant coordinates in dbSNP VCF
vcf indel coordinates dbsnp rspos written 17 months ago by wjastle • 10
0
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0
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592
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0
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MCS-R2 (encode HS-40) hg19 genomic coordinates
assembly dnase encode coordinates written 18 months ago by eurioste • 20
19
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2
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5.2k
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12 follow
2
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Get Snp Position From A Python Interface.
python tabix coordinates snp written 5.6 years ago by Peixe • 530 • updated 20 months ago by forever • 60
1
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0
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extract genomic sequence based on transcripts
genome fasta coordinates extract transcripts written 2.0 years ago by lay_0 • 40 • updated 2.0 years ago by Ram ♦ 15k
0
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1
answer
888
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1
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Switch genomic coordinates to transcriptomic coordinates
fasta gene coordinates rna-seq written 2.1 years ago by james.lloyd • 80 • updated 2.1 years ago by slw287r • 100
1
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2
answers
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Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
coordinates reference genomes liftover written 2.1 years ago by Irene@Sequencing.com • 220 • updated 2.1 years ago by Denise - Open Targets • 4.5k
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4
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11k
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5 follow
4
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How Do I Get The Gene Names From The Chromosome Locations In A Wig File
wiggle galaxy coordinates ucsc written 8.2 years ago by pixie@bioinfo • 1.3k • updated 2.1 years ago by Whoknows • 640
1
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1
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1
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Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
genome bed coordinates sequencing bedgraph written 2.3 years ago by biohack92 • 130 • updated 2.3 years ago by Alex Reynolds ♦ 24k
2
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1
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1.0k
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1
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extract CDS sequence between two genomic positions
sequencing R coordinates bam cds written 2.4 years ago by morganeboone • 0 • updated 2.4 years ago by abascalfederico • 1.0k
4
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1
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749
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1
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Encoding zero-length features in BED format
genome bed coordinates written 2.4 years ago by Daniel Standage ♦ 3.7k • updated 2.4 years ago by Chris Miller ♦ 20k
4
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2
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1.4k
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2
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How to get coordinates from UCSC Genome Browser
ucsc genome browser coordinates written 2.6 years ago by fk566938 • 10 • updated 2.6 years ago by Alex Reynolds ♦ 24k
0
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2
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1.3k
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2
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How to annotate a sequence with its genomic coordinates ?
rna sequence coordinates written 3.6 years ago by lin.pei26 • 50 • updated 2.6 years ago by rutial • 40
11
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1
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2.0k
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1
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What Coordinate System Does Biomart Use?
biomart coordinates written 7.3 years ago by Ryan Thompson • 3.4k • updated 2.7 years ago by Biostar ♦♦ 20
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