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<prev • 107 results • page 1 of 4 • next >
17
votes
3
answers
9.4k
views
6 follow
3
answers
Getting Sequence Based On Chromosome No And Coordinates From Whole Genome Fasta File
sequence coordinates tool written 6.7 years ago by Anurag • 20 • updated 19 days ago by Biostar ♦♦ 20
0
votes
0
answers
71
views
0
answers
How to divide a chromosome into arms and center?
chromsome arm coordinates center bed written 19 days ago by Zee_S • 20
11
votes
4
answers
243
views
10 follow
4
answers
Extracting snps from a range of coordinates
vcf gene coordinates sub-set snp written 8 weeks ago by S AR • 50 • updated 8 weeks ago by toralmanvar • 720
19
votes
6
answers
6.6k
views
10 follow
6
answers
How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 8.4 years ago by Jeremiahloh • 30 • updated 3 months ago by RamRS ♦ 19k
20
votes
4
answers
11k
views
5 follow
4
answers
How Do I Get The Gene Names From The Chromosome Locations In A Wig File
wiggle galaxy coordinates ucsc written 8.6 years ago by pixie@bioinfo • 1.3k • updated 3 months ago by RamRS ♦ 19k
3
votes
1
answer
236
views
5 follow
1
answer
Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 5 months ago by bisansamara • 10 • updated 5 months ago by Tao • 260
177
votes
0
answers
41k
views
120 follow
0
answers
Tutorial: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
tutorial coordinates written 5.1 years ago by Obi Griffith ♦ 17k
0
votes
0
answers
406
views
0
answers
Retrieve genomic coordinates (locus start, locus end) from blastn hits?
locus coordinates blastn reciprocal best hits written 9 months ago by sombrajo92 • 0 • updated 7 months ago by Biostar ♦♦ 20
0
votes
1
answer
261
views
1
answer
Blast subject coordinates
coordinates subject blast written 7 months ago by deepti1rao • 20 • updated 7 months ago by RamRS ♦ 19k
0
votes
0
answers
219
views
0
answers
fantom5 enhancers GRCh38
fantom5 R enhancers coordinates genomics written 7 months ago by Pin.Bioinf • 170
0
votes
0
answers
249
views
0
answers
how to get intergene coordinates for a single chromosome?
bedtools intersect intergene coordinates written 7 months ago by Zee_S • 20
0
votes
1
answer
1.6k
views
1
answer
Finding hg19 coordinates for primers to make BED file
primers coordinates hg19 written 2.9 years ago by adnan.haider.ra • 10 • updated 7 months ago by bioinfo89 • 40
147
votes
3
answers
73k
views
89 follow
3
answers
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 5.8 years ago by Malachi Griffith ♦ 17k
9
votes
6
answers
6.4k
views
10 follow
6
answers
Is There An Easy Way Of Getting Gene Symbols From Genomic Coordinates?
gene coordinates written 5.4 years ago by merajazizmeraj • 20 • updated 8 months ago by Roman Valls Guimerà • 510
24
votes
6
answers
12k
views
12 follow
6
answers
Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
genome ensembl coordinates mapping ucsc written 7.1 years ago by Ryan D • 3.3k • updated 11 months ago by ericrkofman • 0
1
vote
2
answers
2.1k
views
2
answers
Mutation Taster Gdna Coordinates
coordinates mutation written 6.2 years ago by jp.of.mars • 0 • updated 13 months ago by Biostar ♦♦ 20
9
votes
1
answer
459
views
7 follow
1
answer
Data Mining from my Genomic Coordinates
vcf ngs coordinates database sql written 13 months ago by Paul • 1.2k • updated 13 months ago by Kevin Blighe ♦ 33k
32
votes
3
answers
16k
views
9 follow
3
answers
Exon Coordinates Of Hg19 Genome Download
exon coordinates human hg written 7.7 years ago by Neeraj • 150 • updated 14 months ago by Biostar ♦♦ 20
2
votes
1
answer
594
views
1
answer
[hg19] Reading genes with CCDS
grch37 coordinates ccds hg19 written 14 months ago by mollitz • 20 • updated 14 months ago by Satyajeet Khare • 1.3k
2
votes
1
answer
2.0k
views
1
answer
Can One Use The Ensembl Api To Retrieve Multiple Alignment Between The 46 Vertebrate Species
ensembl alignment coordinates written 6.4 years ago by bingyu19821270 • 40 • updated 18 months ago by Biostar ♦♦ 20
21
votes
5
answers
11k
views
9 follow
5
answers
How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 7.7 years ago by Sakshi • 20 • updated 19 months ago by Biostar ♦♦ 20
6
votes
1
answer
758
views
5 follow
1
answer
Construct a gene arrow map to show the gene features
annotation coordinates gene map written 20 months ago by utkarsh.sood • 30 • updated 20 months ago by Pierre Lindenbaum ♦ 115k
1
vote
1
answer
1.2k
views
1
answer
Variant coordinates in dbSNP VCF
vcf indel coordinates dbsnp rspos written 22 months ago by wjastle • 10
0
votes
0
answers
686
views
0
answers
MCS-R2 (encode HS-40) hg19 genomic coordinates
assembly dnase encode coordinates written 22 months ago by eurioste • 20
19
votes
2
answers
5.8k
views
12 follow
2
answers
Get Snp Position From A Python Interface.
python tabix coordinates snp written 6.0 years ago by Peixe • 570 • updated 2.1 years ago by forever • 80
1
vote
0
answers
859
views
0
answers
extract genomic sequence based on transcripts
genome fasta coordinates extract transcripts written 2.5 years ago by lay_0 • 50 • updated 2.5 years ago by RamRS ♦ 19k
0
votes
1
answer
1.1k
views
1
answer
Switch genomic coordinates to transcriptomic coordinates
fasta gene coordinates rna-seq written 2.5 years ago by james.lloyd • 80 • updated 2.5 years ago by slw287r • 100
1
vote
2
answers
955
views
2
answers
Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
coordinates reference genomes liftover written 2.5 years ago by Irene@Sequencing.com • 230 • updated 2.5 years ago by Denise - Open Targets • 4.7k
1
vote
1
answer
793
views
1
answer
Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
genome bed coordinates sequencing bedgraph written 2.7 years ago by biohack92 • 130 • updated 2.7 years ago by Alex Reynolds ♦ 26k
2
votes
1
answer
1.2k
views
1
answer
extract CDS sequence between two genomic positions
sequencing R coordinates bam cds written 2.8 years ago by morganeboone • 0 • updated 2.8 years ago by abascalfederico • 1.0k
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