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19
votes
6
answers
6.4k
views
10 follow
6
answers
How To Extract Just The Coordinate Values From A Pdb File Converted To A Text File, In Java Only?
pdb java coordinates structure parsing written 8.2 years ago by Jeremiahloh • 30 • updated 14 days ago by RamRS ♦ 17k
20
votes
4
answers
11k
views
5 follow
4
answers
How Do I Get The Gene Names From The Chromosome Locations In A Wig File
wiggle galaxy coordinates ucsc written 8.4 years ago by pixie@bioinfo • 1.3k • updated 17 days ago by RamRS ♦ 17k
3
votes
1
answer
191
views
5 follow
1
answer
Get variant position knowing the gene name, base change, and NM#
gene genome coordinates variant written 3 months ago by bisansamara • 10 • updated 3 months ago by Tao • 240
168
votes
1
answer
38k
views
116 follow
1
answer
Tutorial: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
tutorial coordinates written 4.9 years ago by Obi Griffith ♦ 17k
0
votes
0
answers
302
views
0
answers
Retrieve genomic coordinates (locus start, locus end) from blastn hits?
locus coordinates blastn reciprocal best hits written 6 months ago by sombrajo92 • 0 • updated 4 months ago by Biostar ♦♦ 20
0
votes
1
answer
183
views
1
answer
Blast subject coordinates
coordinates subject blast written 4 months ago by deepti1rao • 0 • updated 4 months ago by RamRS ♦ 17k
0
votes
0
answers
173
views
0
answers
fantom5 enhancers GRCh38
fantom5 R enhancers coordinates genomics written 5 months ago by Pin.Bioinf • 150
0
votes
0
answers
205
views
0
answers
how to get intergene coordinates for a single chromosome?
bedtools intersect intergene coordinates written 5 months ago by Zee_S • 20
0
votes
1
answer
1.5k
views
1
answer
Finding hg19 coordinates for primers to make BED file
primers coordinates hg19 written 2.7 years ago by adnan.haider.ra • 10 • updated 5 months ago by bioinfo89 • 20
143
votes
3
answers
69k
views
87 follow
3
answers
Tool: Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
tool genome conversion coordinates ensembl liftover written 5.6 years ago by Malachi Griffith ♦ 16k
9
votes
6
answers
6.1k
views
10 follow
6
answers
Is There An Easy Way Of Getting Gene Symbols From Genomic Coordinates?
gene coordinates written 5.2 years ago by merajazizmeraj • 20 • updated 5 months ago by Roman Valls Guimerà • 500
24
votes
6
answers
12k
views
12 follow
6
answers
Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
genome ensembl coordinates mapping ucsc written 6.9 years ago by Ryan D • 3.3k • updated 8 months ago by ericrkofman • 0
1
vote
2
answers
2.0k
views
2
answers
Mutation Taster Gdna Coordinates
coordinates mutation written 6.0 years ago by jp.of.mars • 0 • updated 11 months ago by Biostar ♦♦ 20
9
votes
1
answer
421
views
7 follow
1
answer
Data Mining from my Genomic Coordinates
vcf ngs coordinates database sql written 11 months ago by Paul • 1.1k • updated 11 months ago by Kevin Blighe ♦ 28k
32
votes
3
answers
16k
views
9 follow
3
answers
Exon Coordinates Of Hg19 Genome Download
exon coordinates human hg written 7.5 years ago by Neeraj • 150 • updated 11 months ago by Biostar ♦♦ 20
2
votes
1
answer
515
views
1
answer
[hg19] Reading genes with CCDS
grch37 coordinates ccds hg19 written 12 months ago by mollitz • 10 • updated 12 months ago by Satyajeet Khare • 1.3k
2
votes
1
answer
2.0k
views
1
answer
Can One Use The Ensembl Api To Retrieve Multiple Alignment Between The 46 Vertebrate Species
ensembl alignment coordinates written 6.2 years ago by bingyu19821270 • 40 • updated 16 months ago by Biostar ♦♦ 20
21
votes
5
answers
11k
views
9 follow
5
answers
How To Extract Just The Coordinate Values From A Pdb File, Using Perl Only?
pdb perl coordinates protein parsing written 7.5 years ago by Sakshi • 20 • updated 16 months ago by Biostar ♦♦ 20
6
votes
1
answer
640
views
5 follow
1
answer
Construct a gene arrow map to show the gene features
annotation coordinates gene map written 17 months ago by utkarsh.sood • 30 • updated 17 months ago by Pierre Lindenbaum ♦ 112k
1
vote
1
answer
1.1k
views
1
answer
Variant coordinates in dbSNP VCF
vcf indel coordinates dbsnp rspos written 20 months ago by wjastle • 10
0
votes
0
answers
643
views
0
answers
MCS-R2 (encode HS-40) hg19 genomic coordinates
assembly dnase encode coordinates written 20 months ago by eurioste • 20
19
votes
2
answers
5.5k
views
12 follow
2
answers
Get Snp Position From A Python Interface.
python tabix coordinates snp written 5.8 years ago by Peixe • 530 • updated 22 months ago by forever • 60
1
vote
0
answers
814
views
0
answers
extract genomic sequence based on transcripts
genome fasta coordinates extract transcripts written 2.2 years ago by lay_0 • 50 • updated 2.2 years ago by RamRS ♦ 17k
0
votes
1
answer
980
views
1
answer
Switch genomic coordinates to transcriptomic coordinates
fasta gene coordinates rna-seq written 2.3 years ago by james.lloyd • 80 • updated 2.3 years ago by slw287r • 100
1
vote
2
answers
876
views
2
answers
Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
coordinates reference genomes liftover written 2.3 years ago by Irene@Sequencing.com • 220 • updated 2.3 years ago by Denise - Open Targets • 4.6k
1
vote
1
answer
751
views
1
answer
Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
genome bed coordinates sequencing bedgraph written 2.4 years ago by biohack92 • 130 • updated 2.4 years ago by Alex Reynolds ♦ 25k
2
votes
1
answer
1.1k
views
1
answer
extract CDS sequence between two genomic positions
sequencing R coordinates bam cds written 2.6 years ago by morganeboone • 0 • updated 2.6 years ago by abascalfederico • 1.0k
4
votes
1
answer
792
views
1
answer
Encoding zero-length features in BED format
genome bed coordinates written 2.6 years ago by Daniel Standage ♦ 3.8k • updated 2.6 years ago by Chris Miller ♦ 20k
4
votes
2
answers
1.4k
views
2
answers
How to get coordinates from UCSC Genome Browser
ucsc genome browser coordinates written 2.8 years ago by fk566938 • 10 • updated 2.8 years ago by Alex Reynolds ♦ 25k
0
votes
2
answers
1.4k
views
2
answers
How to annotate a sequence with its genomic coordinates ?
rna sequence coordinates written 3.8 years ago by lin.pei26 • 60 • updated 2.8 years ago by rutial • 40
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