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<prev • 36 results • page 1 of 2 • next >
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TCGA raw data (Level 1)
copy number rna-seq snp written 8 hours ago by H.Hasani • 590
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How do you run GISTIC2 with ExomeCNV outputs?
gistic exomecnv copy number cnv written 5 weeks ago by Andy Lee • 0
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Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 9 months ago by igor ♦ 6.2k
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GISTIC 2.0.23 error
gistic dnacopy copy number written 13 months ago by mkaushal • 70
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 10 months ago by a01039012387 • 0 • updated 4 months ago by nilesh.gardi2688 • 0
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High residual variance in copy number alteration analysis
exome residual variance copy number segmentation written 5 months ago by rmateos.1 • 10
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Preprocess Illumina Hiseq Exome for ASCAT
genome R next-gen copy number sequencing written 7 months ago by prideda0 • 0 • updated 6 months ago by Biostar ♦♦ 20
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Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
tcga copy number cnv written 6 months ago by mbk0asis • 350
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 7 months ago by ThePresident • 90 • updated 6 months ago by WouterDeCoster ♦ 29k
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Matched normal necessary for Battenberg algorithm
clonality copy number snp written 8 months ago by chloe.steen • 130
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Have the copy numbers (or segment means) in the "minus_germline" TCGA datasets already been compared to normal tissue data?
tcga copy number cnv written 12 months ago by bddesanctis • 0 • updated 12 months ago by Persistent LABS • 740
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SNP Array data with 0 copies for a segment
copy number snp cgh written 15 months ago by zucker.64 • 10 • updated 15 months ago by bernatgel • 1.2k
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 15 months ago by nbay13 • 0 • updated 15 months ago by Eric T. • 2.2k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 15 months ago by Lauren • 20 • updated 15 months ago by Eric T. • 2.2k
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Ploidy vs. copy number in Sequenza
depth ratio sequenza copy number ploidy written 20 months ago by wclee47 • 0 • updated 19 months ago by favero.francesco • 120
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What isthe Indication of copy number?
gene copy number dna written 19 months ago by andrew.samy.abdelmalak • 0 • updated 19 months ago by Devon Ryan ♦ 81k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 20 months ago by lyan.liu • 0 • updated 20 months ago by Chris Miller ♦ 19k
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The difference between Copy Number Alterations, Copy Number Aberrations (CNAs) and Copy Number Variations (CNVs).
cna acgh copy number cnv written 2.8 years ago by Ward Weistra • 160 • updated 20 months ago by yukselmek • 0
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Sciclone on exome sequencing data
copy number sciclone exome seq written 2.3 years ago by chloe.steen • 130 • updated 21 months ago by Chris Miller ♦ 19k
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The outputs of GISTIC
gistic copy number cnv written 23 months ago by agicict • 120 • updated 22 months ago by Biostar ♦♦ 20
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Why does GISTIC require a markers file?
gistic copy number written 2.1 years ago by Irsan • 6.6k • updated 23 months ago by neelablore • 0
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ASCAT for zebrafish samples
copy number genome duplication tumor ploidy written 2.0 years ago by revatidarp • 0
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ChrM in the Varscan2 copynumber output
copy number varscan2 written 2.3 years ago by lhaiyan3 • 20
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Calling CNA from aCGH: Thresholding?
copy number array cgh written 2.4 years ago by Noushin N • 520 • updated 2.4 years ago by Eric T. • 2.2k
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Identify list of reoccurring genes from CNV using GISTIC
gistic reoccurring genes copy number cnv written 2.6 years ago by Chirag Nepal • 2.1k
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CNA calculation from Segmentation file
cna copy number segmentation file written 2.9 years ago by Meenakshi • 10
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The reason two identical sequences have different accession numbers and different loci
alignment copy number written 3.1 years ago by Michel Edwar • 40 • updated 3.1 years ago by h.mon ♦ 15k
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gistic for whole genome sequencing copy number analysis
gistic copy number whole genome sequencing written 3.2 years ago by owen • 0 • updated 3.2 years ago by Irsan • 6.6k
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How to get copy number change co-ordinates for all cancers from cbioportal
genome copy number sequencing written 3.2 years ago by sebastianzeki0 • 110
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How to find most common copy number changes in cancer
copy number cancer sequencing written 3.2 years ago by sebastianzeki0 • 110 • updated 3.2 years ago by vchris_ngs • 4.5k
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