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Showing: copy number • reset
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<prev • 47 results • page 1 of 2 • next >
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Not understand the value in VCF file
genome sv copy number sequencing written 1 day ago by leovam173 • 0
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125
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How to do "re-segmentation" from segmented copy number
copy number snp segmentation written 5 weeks ago by melpag • 0
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91
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Different Copy Number Alteration Results from Fresh Frozen Tissue Sample and matched Cell Line
scna cell line copy number shallow-seq written 8 weeks ago by berry • 0 • updated 8 weeks ago by i.sudbery ♦ 5.1k
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6 follow
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GISTIC 2.0.23 error
gistic dnacopy copy number written 2.2 years ago by mkaushal • 110 • updated 11 weeks ago by dompearcejankowski • 10
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173
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CNV Segmentation density - non-zero?
genome cytosnp copy number snp cnv written 11 weeks ago by dompearcejankowski • 10 • updated 11 weeks ago by markus.riester • 480
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175
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Creating marker file for GICTIC2
wgs copy number gistic2 segmentation written 3 months ago by F • 3.4k • updated 3 months ago by RamRS ♦ 23k
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1
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182
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1
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Question about chromosomal instability
gene R chromosome copy number genome written 3 months ago by Vasu • 340 • updated 3 months ago by Kevin Blighe ♦ 46k
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1
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319
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1
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Rawcopy copy number analysis
rawcopy copy number written 11 months ago by moritz.feigl • 0 • updated 4 months ago by hu19930121 • 0
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255
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Filtering number of markers after segmentation using DNAcopy
dnacopy copy number segmentation written 6 months ago by jrlarsen • 0 • updated 6 months ago by Eric T. • 2.5k
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6 follow
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Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 23 months ago by igor ♦ 8.1k • updated 9 months ago by bhaas • 110
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430
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computing the CNA in the cancer genomes
cna copy number cnv cancer written 11 months ago by Bogdan • 850 • updated 11 months ago by Kevin Blighe ♦ 46k
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2
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3.8k
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2
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"missing value where TRUE/FALSE needed" in 16Stimator R script
R 16s copy number is.na 16stimator written 11 months ago by charles.bridges • 70 • updated 11 months ago by zx8754 ♦ 7.9k
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421
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Focal copy number alterations in IGV
cna tcga copy number igv written 12 months ago by neuro3030 • 0
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TCGA raw data (Level 1)
copy number rna-seq snp written 13 months ago by H.Hasani • 760
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750
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How do you run GISTIC2 with ExomeCNV outputs?
gistic exomecnv copy number cnv written 15 months ago by Andy Lee • 10
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 2.0 years ago by a01039012387 • 10 • updated 18 months ago by nilesh.gardi2688 • 0
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433
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High residual variance in copy number alteration analysis
exome residual variance copy number segmentation written 19 months ago by rmateos.1 • 10
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861
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Preprocess Illumina Hiseq Exome for ASCAT
genome R next-gen copy number sequencing written 21 months ago by prideda0 • 0 • updated 20 months ago by Biostar ♦♦ 20
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Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
tcga copy number cnv written 20 months ago by mbk0asis • 460
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 20 months ago by ThePresident • 130 • updated 20 months ago by WouterDeCoster ♦ 40k
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665
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Matched normal necessary for Battenberg algorithm
clonality copy number snp written 22 months ago by cbst • 150
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Have the copy numbers (or segment means) in the "minus_germline" TCGA datasets already been compared to normal tissue data?
tcga copy number cnv written 2.2 years ago by bddesanctis • 0 • updated 2.2 years ago by Persistent LABS • 740
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733
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SNP Array data with 0 copies for a segment
copy number snp cgh written 2.4 years ago by zucker.64 • 20 • updated 2.4 years ago by bernatgel • 2.0k
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 2.4 years ago by nbay13 • 0 • updated 2.4 years ago by Eric T. • 2.5k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 2.4 years ago by Lauren • 50 • updated 2.4 years ago by Eric T. • 2.5k
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1
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Ploidy vs. copy number in Sequenza
depth ratio sequenza copy number ploidy written 2.8 years ago by wclee47 • 0 • updated 2.8 years ago by favero.francesco • 120
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What isthe Indication of copy number?
gene copy number dna written 2.8 years ago by andrew.samy.abdelmalak • 0 • updated 2.8 years ago by Devon Ryan ♦ 91k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 2.8 years ago by lyan.liu • 0 • updated 2.8 years ago by Chris Miller ♦ 21k
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The difference between Copy Number Alterations, Copy Number Aberrations (CNAs) and Copy Number Variations (CNVs).
cna acgh copy number cnv written 3.9 years ago by Ward Weistra • 180 • updated 2.8 years ago by yukselmek • 0
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Sciclone on exome sequencing data
copy number sciclone exome seq written 3.4 years ago by cbst • 150 • updated 2.9 years ago by Chris Miller ♦ 21k
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