Showing: copy numberreset
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Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 13 months ago by igor7.0k • updated 9 days ago by bhaas110
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computing the CNA in the cancer genomes
cna copy number cnv cancer written 10 weeks ago by Bogdan680 • updated 9 weeks ago by Kevin Blighe32k
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"missing value where TRUE/FALSE needed" in 16Stimator R script
R 16s copy number is.na 16stimator written 10 weeks ago by charles.bridges70 • updated 10 weeks ago by zx87545.6k
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GISTIC 2.0.23 error
gistic dnacopy copy number written 18 months ago by mkaushal80 • updated 3 months ago by huang1820
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TCGA raw data (Level 1)
copy number rna-seq snp written 4 months ago by H.Hasani610
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Preprocess Illumina Hiseq Exome for ASCAT
genome R next-gen copy number sequencing written 12 months ago by prideda00 • updated 10 months ago by Biostar ♦♦ 20
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 11 months ago by ThePresident100 • updated 11 months ago by WouterDeCoster34k
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SNP Array data with 0 copies for a segment
copy number snp cgh written 20 months ago by zucker.6410 • updated 20 months ago by bernatgel1.3k
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 20 months ago by nbay130 • updated 20 months ago by Eric T.2.3k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 20 months ago by Lauren20 • updated 20 months ago by Eric T.2.3k
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Ploidy vs. copy number in Sequenza
depth ratio sequenza copy number ploidy written 2.0 years ago by wclee470 • updated 2.0 years ago by favero.francesco120
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What isthe Indication of copy number?
gene copy number dna written 2.0 years ago by andrew.samy.abdelmalak0 • updated 2.0 years ago by Devon Ryan86k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 2.1 years ago by lyan.liu0 • updated 2.1 years ago by Chris Miller20k
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Sciclone on exome sequencing data
copy number sciclone exome seq written 2.7 years ago by cbst140 • updated 2.1 years ago by Chris Miller20k
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The outputs of GISTIC
gistic copy number cnv written 2.4 years ago by agicict130 • updated 2.3 years ago by Biostar ♦♦ 20
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Why does GISTIC require a markers file?
gistic copy number written 2.4 years ago by Irsan6.8k • updated 2.3 years ago by neelablore0
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Calling CNA from aCGH: Thresholding?
copy number array cgh written 2.8 years ago by Noushin N530 • updated 2.8 years ago by Eric T.2.3k
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