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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 7 weeks ago by a01039012387 • 0 • updated 2 days ago by Biostar ♦♦ 20
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Have the copy numbers (or segment means) in the "minus_germline" TCGA datasets already been compared to normal tissue data?
tcga copy number cnv written 3 months ago by bddesanctis • 0 • updated 3 months ago by Persistent LABS • 740
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GISTIC 2.0.23 error
gistic dnacopy copy number written 4 months ago by mkaushal • 70
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SNP Array data with 0 copies for a segment
copy number snp cgh written 6 months ago by zucker.64 • 10 • updated 6 months ago by bernatgel • 770
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 6 months ago by nbay13 • 0 • updated 6 months ago by Eric T. • 1.8k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 6 months ago by Lauren • 10 • updated 6 months ago by Eric T. • 1.8k
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Ploidy vs. copy number in Sequenza
depth ratio sequenza copy number ploidy written 10 months ago by wclee47 • 0 • updated 10 months ago by favero.francesco • 110
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What isthe Indication of copy number?
gene copy number dna written 10 months ago by andrew.samy.abdelmalak • 0 • updated 10 months ago by Devon Ryan ♦ 70k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 11 months ago by lyan.liu • 0 • updated 11 months ago by Chris Miller ♦ 18k
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The difference between Copy Number Alterations, Copy Number Aberrations (CNAs) and Copy Number Variations (CNVs).
cna acgh copy number cnv written 2.0 years ago by Ward Weistra • 130 • updated 11 months ago by yukselmek • 0
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Sciclone on exome sequencing data
copy number sciclone exome seq written 18 months ago by chloe.steen • 120 • updated 12 months ago by Chris Miller ♦ 18k
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The outputs of GISTIC
gistic copy number cnv written 14 months ago by agicict • 90 • updated 13 months ago by Biostar ♦♦ 20
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Why does GISTIC require a markers file?
gistic copy number written 15 months ago by Irsan • 6.3k • updated 14 months ago by neelablore • 0
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ASCAT for zebrafish samples
copy number genome duplication tumor ploidy written 15 months ago by revatidarp • 0
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ChrM in the Varscan2 copynumber output
copy number varscan2 written 18 months ago by lhaiyan3 • 10
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Calling CNA from aCGH: Thresholding?
copy number array cgh written 19 months ago by Noushin N • 390 • updated 19 months ago by Eric T. • 1.8k
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Identify list of reoccurring genes from CNV using GISTIC
gistic reoccurring genes copy number cnv written 22 months ago by Chirag Nepal • 1.9k
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CNA calculation from Segmentation file
cna copy number segmentation file written 2.2 years ago by Meenakshi • 10
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The reason two identical sequences have different accession numbers and different loci
alignment copy number written 2.3 years ago by Michel Edwar • 40 • updated 2.3 years ago by h.mon ♦ 8.7k
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gistic for whole genome sequencing copy number analysis
gistic copy number whole genome sequencing written 2.4 years ago by owen • 0 • updated 2.4 years ago by Irsan • 6.3k
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How to get copy number change co-ordinates for all cancers from cbioportal
genome copy number sequencing written 2.5 years ago by sebastianzeki0 • 100
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How to find most common copy number changes in cancer
copy number cancer sequencing written 2.5 years ago by sebastianzeki0 • 100 • updated 2.5 years ago by vchris_ngs • 4.0k
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tumor sample SNP6 copy number calling
cna snp6 tumor copy number snp written 2.5 years ago by Zhenyu • 150 • updated 2.5 years ago by Pierre Lindenbaum ♦ 98k
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Copy number (repeat count) of assembled contigs
de novo assembly repeat count copy number contigs written 2.6 years ago by misaghb • 30 • updated 2.6 years ago by apelin20 • 460
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Find Her2 copy number by FISH in TCGA BRCA clinical file
tcga brca copy number her2 clinical annotation written 2.7 years ago by Sebastian Boegel • 390
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How to find the most commonly affected consensus copy number range given slightly different per sample range
copy number sequencing written 2.7 years ago by sebastianzeki0 • 100 • updated 2.7 years ago by Biostar ♦♦ 20
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CNV calling program for NGS data that can be down-scaled for reads covering one gene
next-gen copy number cnv bam written 3.2 years ago by zedmunds • 0 • updated 3.2 years ago by Kizuna • 710
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Copy Number Detection with ExomeDepth.. parsing error of bam file
exome depth copy number written 3.2 years ago by younhee.ko • 0 • updated 3.2 years ago by User6891 • 190
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