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Showing: copy number • reset
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10
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3
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1.4k
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6 follow
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Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 13 months ago by igor ♦ 7.0k • updated 9 days ago by bhaas • 110
0
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0
answers
114
views
0
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Rawcopy copy number analysis
rawcopy copy number written 9 weeks ago by moritz.feigl • 0
0
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1
answer
201
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1
answer
computing the CNA in the cancer genomes
cna copy number cnv cancer written 10 weeks ago by Bogdan • 680 • updated 9 weeks ago by Kevin Blighe ♦ 32k
3
votes
2
answers
386
views
2
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"missing value where TRUE/FALSE needed" in 16Stimator R script
R 16s copy number is.na 16stimator written 10 weeks ago by charles.bridges • 70 • updated 10 weeks ago by zx8754 ♦ 5.6k
1
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2
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5 follow
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GISTIC 2.0.23 error
gistic dnacopy copy number written 18 months ago by mkaushal • 80 • updated 3 months ago by huang182 • 0
0
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0
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197
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0
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Focal copy number alterations in IGV
cna tcga copy number igv written 3 months ago by neuro3030 • 0
2
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0
answers
220
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0
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TCGA raw data (Level 1)
copy number rna-seq snp written 4 months ago by H.Hasani • 610
0
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0
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278
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0
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How do you run GISTIC2 with ExomeCNV outputs?
gistic exomecnv copy number cnv written 6 months ago by Andy Lee • 20
1
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2
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790
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2
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 15 months ago by a01039012387 • 10 • updated 8 months ago by nilesh.gardi2688 • 0
0
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0
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269
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0
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High residual variance in copy number alteration analysis
exome residual variance copy number segmentation written 10 months ago by rmateos.1 • 10
0
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0
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589
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0
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Preprocess Illumina Hiseq Exome for ASCAT
genome R next-gen copy number sequencing written 12 months ago by prideda0 • 0 • updated 10 months ago by Biostar ♦♦ 20
0
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0
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387
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0
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Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
tcga copy number cnv written 11 months ago by mbk0asis • 380
10
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1
answer
898
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5 follow
1
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 11 months ago by ThePresident • 100 • updated 11 months ago by WouterDeCoster ♦ 34k
0
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0
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408
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0
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Matched normal necessary for Battenberg algorithm
clonality copy number snp written 13 months ago by cbst • 140
0
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1
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1
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Have the copy numbers (or segment means) in the "minus_germline" TCGA datasets already been compared to normal tissue data?
tcga copy number cnv written 17 months ago by bddesanctis • 0 • updated 17 months ago by Persistent LABS • 740
1
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1
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579
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1
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SNP Array data with 0 copies for a segment
copy number snp cgh written 20 months ago by zucker.64 • 10 • updated 20 months ago by bernatgel • 1.3k
1
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1
answer
952
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1
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 20 months ago by nbay13 • 0 • updated 20 months ago by Eric T. • 2.3k
5
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1
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1.1k
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1
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 20 months ago by Lauren • 20 • updated 20 months ago by Eric T. • 2.3k
2
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1
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1.5k
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1
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Ploidy vs. copy number in Sequenza
depth ratio sequenza copy number ploidy written 2.0 years ago by wclee47 • 0 • updated 2.0 years ago by favero.francesco • 120
1
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1
answer
586
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1
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What isthe Indication of copy number?
gene copy number dna written 2.0 years ago by andrew.samy.abdelmalak • 0 • updated 2.0 years ago by Devon Ryan ♦ 86k
0
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1
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1.4k
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1
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 2.1 years ago by lyan.liu • 0 • updated 2.1 years ago by Chris Miller ♦ 20k
17
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2
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15k
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2
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The difference between Copy Number Alterations, Copy Number Aberrations (CNAs) and Copy Number Variations (CNVs).
cna acgh copy number cnv written 3.2 years ago by Ward Weistra • 160 • updated 2.1 years ago by yukselmek • 0
6
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2
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1.9k
views
2
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Sciclone on exome sequencing data
copy number sciclone exome seq written 2.7 years ago by cbst • 140 • updated 2.1 years ago by Chris Miller ♦ 20k
1
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0
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1.5k
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0
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The outputs of GISTIC
gistic copy number cnv written 2.4 years ago by agicict • 130 • updated 2.3 years ago by Biostar ♦♦ 20
2
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3
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1.8k
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3
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Why does GISTIC require a markers file?
gistic copy number written 2.4 years ago by Irsan • 6.8k • updated 2.3 years ago by neelablore • 0
0
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0
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642
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0
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ASCAT for zebrafish samples
copy number genome duplication tumor ploidy written 2.4 years ago by revatidarp • 0
0
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0
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902
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0
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ChrM in the Varscan2 copynumber output
copy number varscan2 written 2.7 years ago by lhaiyan3 • 20
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1
answer
912
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1
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Calling CNA from aCGH: Thresholding?
copy number array cgh written 2.8 years ago by Noushin N • 530 • updated 2.8 years ago by Eric T. • 2.3k
1
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0
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1.3k
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0
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Identify list of reoccurring genes from CNV using GISTIC
gistic reoccurring genes copy number cnv written 3.0 years ago by Chirag Nepal • 2.1k
12
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2
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2.5k
views
7 follow
2
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CNA calculation from Segmentation file
cna copy number segmentation file written 3.3 years ago by Meenakshi • 10
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