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4
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What does mean when people say AAB copy-number state?
wgs copy number written 22 days ago by A • 3.7k • updated 22 days ago by Jan Oosting • 910
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120
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estimate tumor purity from capture panel data using tumor-only mode
ffpe tumor purity target capture copy number written 6 weeks ago by lffu_0032 • 40 • updated 6 weeks ago by markus.riester • 480
2
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1
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388
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1
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Creating marker file for GICTIC2
wgs copy number gistic2 segmentation written 8 months ago by A • 3.7k • updated 7 weeks ago by tingting.gao • 0
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116
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1
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how to normalize and compare CNV value in different samples
cna copy number cnv written 3 months ago by Shaway • 0
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3
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 2.5 years ago by a01039012387 • 10 • updated 3 months ago by firatuyulur • 300
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113
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Copy Number Aberration detection using Average coverage file
agilent dnaseq copy number surecall R written 3 months ago by BioCanLyse • 0
0
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162
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1
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crlmm package in R - processing the SNP6 copy number data error No arrays above quality threshold!
R snp6 copy number written 5 months ago by misterie • 90
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159
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Not understand the value in VCF file
genome sv copy number sequencing written 5 months ago by leovam173 • 0
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210
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How to do "re-segmentation" from segmented copy number
copy number snp segmentation written 6 months ago by melpag • 0
0
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1
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169
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1
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Different Copy Number Alteration Results from Fresh Frozen Tissue Sample and matched Cell Line
scna cell line copy number shallow-seq written 7 months ago by berry • 10 • updated 7 months ago by i.sudbery ♦ 6.6k
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6 follow
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GISTIC 2.0.23 error
gistic dnacopy copy number written 2.7 years ago by mkaushal • 110 • updated 7 months ago by dompearcejankowski • 10
2
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1
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278
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1
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CNV Segmentation density - non-zero?
genome cytosnp copy number snp cnv written 8 months ago by dompearcejankowski • 10 • updated 8 months ago by markus.riester • 480
3
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288
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1
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Question about chromosomal instability
gene R chromosome copy number genome written 9 months ago by Vasu • 420 • updated 9 months ago by Kevin Blighe ♦ 53k
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435
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1
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Rawcopy copy number analysis
rawcopy copy number written 16 months ago by moritz.feigl • 0 • updated 10 months ago by hu19930121 • 0
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354
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Filtering number of markers after segmentation using DNAcopy
dnacopy copy number segmentation written 11 months ago by jrlarsen • 0 • updated 11 months ago by Eric T. • 2.5k
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6 follow
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Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 2.3 years ago by igor ♦ 9.2k • updated 14 months ago by bhaas • 110
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548
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1
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computing the CNA in the cancer genomes
cna copy number cnv cancer written 16 months ago by Bogdan • 910 • updated 16 months ago by Kevin Blighe ♦ 53k
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2
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"missing value where TRUE/FALSE needed" in 16Stimator R script
R 16s copy number is.na 16stimator written 16 months ago by charles.bridges • 70 • updated 16 months ago by zx8754 ♦ 8.8k
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570
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Focal copy number alterations in IGV
cna tcga copy number igv written 17 months ago by neuro3030 • 10
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TCGA raw data (Level 1)
copy number rna-seq snp written 19 months ago by H.Hasani • 840
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How do you run GISTIC2 with ExomeCNV outputs?
gistic exomecnv copy number cnv written 20 months ago by Andy Lee • 10
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High residual variance in copy number alteration analysis
exome residual variance copy number segmentation written 2.0 years ago by rmateos.1 • 10
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Preprocess Illumina Hiseq Exome for ASCAT
genome R next-gen copy number sequencing written 2.2 years ago by prideda0 • 0 • updated 2.1 years ago by Biostar ♦♦ 20
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Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
tcga copy number cnv written 2.1 years ago by mbk0asis • 510
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 2.2 years ago by ThePresident • 140 • updated 2.1 years ago by WouterDeCoster ♦ 42k
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811
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Matched normal necessary for Battenberg algorithm
clonality copy number snp written 2.3 years ago by cbst • 150
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Have the copy numbers (or segment means) in the "minus_germline" TCGA datasets already been compared to normal tissue data?
tcga copy number cnv written 2.6 years ago by bddesanctis • 0 • updated 2.6 years ago by Persistent LABS • 740
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818
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SNP Array data with 0 copies for a segment
copy number snp cgh written 2.8 years ago by mrz132435 • 20 • updated 2.8 years ago by bernatgel • 2.4k
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 2.9 years ago by nbay13 • 0 • updated 2.9 years ago by Eric T. • 2.5k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 2.9 years ago by Lauren • 60 • updated 2.9 years ago by Eric T. • 2.5k
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