Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: copy number • reset
or   Classic search
<prev • 40 results • page 1 of 2 • next >
10
votes
3
answers
1.7k
views
6 follow
3
answers
Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 16 months ago by igor ♦ 7.2k • updated 10 weeks ago by bhaas • 110
0
votes
0
answers
151
views
0
answers
Rawcopy copy number analysis
rawcopy copy number written 4 months ago by moritz.feigl • 0
0
votes
1
answer
263
views
1
answer
computing the CNA in the cancer genomes
cna copy number cnv cancer written 4 months ago by Bogdan • 690 • updated 4 months ago by Kevin Blighe ♦ 35k
3
votes
2
answers
996
views
2
answers
"missing value where TRUE/FALSE needed" in 16Stimator R script
R 16s copy number is.na 16stimator written 4 months ago by charles.bridges • 70 • updated 4 months ago by zx8754 ♦ 6.2k
1
vote
2
answers
1.9k
views
5 follow
2
answers
GISTIC 2.0.23 error
gistic dnacopy copy number written 20 months ago by mkaushal • 100 • updated 5 months ago by huang182 • 0
0
votes
0
answers
243
views
0
answers
Focal copy number alterations in IGV
cna tcga copy number igv written 5 months ago by neuro3030 • 0
2
votes
0
answers
311
views
0
answers
TCGA raw data (Level 1)
copy number rna-seq snp written 7 months ago by H.Hasani • 640
0
votes
0
answers
376
views
0
answers
How do you run GISTIC2 with ExomeCNV outputs?
gistic exomecnv copy number cnv written 8 months ago by Andy Lee • 10
1
vote
2
answers
892
views
2
answers
I need allele copy number information for running PyClone
wes whole-exome allele copy number written 18 months ago by a01039012387 • 10 • updated 11 months ago by nilesh.gardi2688 • 0
0
votes
0
answers
305
views
0
answers
High residual variance in copy number alteration analysis
exome residual variance copy number segmentation written 12 months ago by rmateos.1 • 10
0
votes
0
answers
654
views
0
answers
Preprocess Illumina Hiseq Exome for ASCAT
genome R next-gen copy number sequencing written 14 months ago by prideda0 • 0 • updated 13 months ago by Biostar ♦♦ 20
0
votes
0
answers
420
views
0
answers
Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
tcga copy number cnv written 13 months ago by mbk0asis • 410
10
votes
1
answer
998
views
5 follow
1
answer
Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 14 months ago by ThePresident • 100 • updated 13 months ago by WouterDeCoster ♦ 36k
0
votes
0
answers
472
views
0
answers
Matched normal necessary for Battenberg algorithm
clonality copy number snp written 15 months ago by cbst • 140
1
vote
1
answer
992
views
1
answer
Have the copy numbers (or segment means) in the "minus_germline" TCGA datasets already been compared to normal tissue data?
tcga copy number cnv written 19 months ago by bddesanctis • 0 • updated 19 months ago by Persistent LABS • 750
1
vote
1
answer
614
views
1
answer
SNP Array data with 0 copies for a segment
copy number snp cgh written 22 months ago by zucker.64 • 10 • updated 22 months ago by bernatgel • 1.6k
1
vote
1
answer
1.1k
views
1
answer
Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 22 months ago by nbay13 • 0 • updated 22 months ago by Eric T. • 2.3k
5
votes
1
answer
1.2k
views
1
answer
CNVkit Segments vs Bins
exome cnvkit copy number segment written 22 months ago by Lauren • 30 • updated 22 months ago by Eric T. • 2.3k
2
votes
1
answer
1.6k
views
1
answer
Ploidy vs. copy number in Sequenza
depth ratio sequenza copy number ploidy written 2.2 years ago by wclee47 • 0 • updated 2.2 years ago by favero.francesco • 120
1
vote
1
answer
624
views
1
answer
What isthe Indication of copy number?
gene copy number dna written 2.2 years ago by andrew.samy.abdelmalak • 0 • updated 2.2 years ago by Devon Ryan ♦ 87k
0
votes
1
answer
1.4k
views
1
answer
sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 2.3 years ago by lyan.liu • 0 • updated 2.3 years ago by Chris Miller ♦ 20k
17
votes
2
answers
16k
views
2
answers
The difference between Copy Number Alterations, Copy Number Aberrations (CNAs) and Copy Number Variations (CNVs).
cna acgh copy number cnv written 3.3 years ago by Ward Weistra • 160 • updated 2.3 years ago by yukselmek • 0
6
votes
2
answers
2.0k
views
2
answers
Sciclone on exome sequencing data
copy number sciclone exome seq written 2.9 years ago by cbst • 140 • updated 2.3 years ago by Chris Miller ♦ 20k
1
vote
0
answers
1.6k
views
0
answers
The outputs of GISTIC
gistic copy number cnv written 2.5 years ago by agicict • 130 • updated 2.5 years ago by Biostar ♦♦ 20
2
votes
3
answers
2.0k
views
3
answers
Why does GISTIC require a markers file?
gistic copy number written 2.6 years ago by Irsan • 6.8k • updated 2.5 years ago by neelablore • 0
0
votes
0
answers
669
views
0
answers
ASCAT for zebrafish samples
copy number genome duplication tumor ploidy written 2.6 years ago by revatidarp • 0
0
votes
0
answers
940
views
0
answers
ChrM in the Varscan2 copynumber output
copy number varscan2 written 2.9 years ago by lhaiyan3 • 20
4
votes
1
answer
950
views
1
answer
Calling CNA from aCGH: Thresholding?
copy number array cgh written 3.0 years ago by Noushin N • 530 • updated 3.0 years ago by Eric T. • 2.3k
1
vote
0
answers
1.4k
views
0
answers
Identify list of reoccurring genes from CNV using GISTIC
gistic reoccurring genes copy number cnv written 3.2 years ago by Chirag Nepal • 2.1k
12
votes
2
answers
2.6k
views
7 follow
2
answers
CNA calculation from Segmentation file
cna copy number segmentation file written 3.5 years ago by Meenakshi • 10
<prev • 40 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, just now
  • Australia, 2 minutes ago
  • Germany, 5 minutes ago
  • Germany, 10 minutes ago
  • United States, 11 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1120 users visited in the last hour