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<prev • 41 results • page 1 of 2 • next >
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Rawcopy copy number analysis
rawcopy copy number written 7 months ago by moritz.feigl • 0 • updated 26 days ago by hu19930121 • 0
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Filtering number of markers after segmentation using DNAcopy
dnacopy copy number segmentation written 10 weeks ago by jrlarsen • 0 • updated 9 weeks ago by Eric T. • 2.4k
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Detecting copy number alterations based on RNA-seq data
copy number rna-seq cnv written 19 months ago by igor ♦ 7.6k • updated 5 months ago by bhaas • 110
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computing the CNA in the cancer genomes
cna copy number cnv cancer written 7 months ago by Bogdan • 740 • updated 7 months ago by Kevin Blighe ♦ 41k
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"missing value where TRUE/FALSE needed" in 16Stimator R script
R 16s copy number is.na 16stimator written 7 months ago by charles.bridges • 70 • updated 7 months ago by zx8754 ♦ 7.1k
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GISTIC 2.0.23 error
gistic dnacopy copy number written 23 months ago by mkaushal • 100 • updated 8 months ago by huang182 • 0
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Focal copy number alterations in IGV
cna tcga copy number igv written 8 months ago by neuro3030 • 0
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TCGA raw data (Level 1)
copy number rna-seq snp written 10 months ago by H.Hasani • 680
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How do you run GISTIC2 with ExomeCNV outputs?
gistic exomecnv copy number cnv written 11 months ago by Andy Lee • 10
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I need allele copy number information for running PyClone
wes whole-exome allele copy number written 21 months ago by a01039012387 • 10 • updated 14 months ago by nilesh.gardi2688 • 0
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High residual variance in copy number alteration analysis
exome residual variance copy number segmentation written 15 months ago by rmateos.1 • 10
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Preprocess Illumina Hiseq Exome for ASCAT
genome R next-gen copy number sequencing written 17 months ago by prideda0 • 0 • updated 16 months ago by Biostar ♦♦ 20
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Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
tcga copy number cnv written 16 months ago by mbk0asis • 410
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 17 months ago by ThePresident • 110 • updated 16 months ago by WouterDeCoster ♦ 38k
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Matched normal necessary for Battenberg algorithm
clonality copy number snp written 18 months ago by cbst • 150
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Have the copy numbers (or segment means) in the "minus_germline" TCGA datasets already been compared to normal tissue data?
tcga copy number cnv written 22 months ago by bddesanctis • 0 • updated 22 months ago by Persistent LABS • 740
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SNP Array data with 0 copies for a segment
copy number snp cgh written 2.1 years ago by zucker.64 • 10 • updated 2.1 years ago by bernatgel • 1.9k
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Error 1: NULL byte detected when trying to segment by PSCBS
exome cnvkit copy number segment written 2.1 years ago by nbay13 • 0 • updated 2.1 years ago by Eric T. • 2.4k
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CNVkit Segments vs Bins
exome cnvkit copy number segment written 2.1 years ago by Lauren • 30 • updated 2.1 years ago by Eric T. • 2.4k
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Ploidy vs. copy number in Sequenza
depth ratio sequenza copy number ploidy written 2.5 years ago by wclee47 • 0 • updated 2.4 years ago by favero.francesco • 120
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What isthe Indication of copy number?
gene copy number dna written 2.5 years ago by andrew.samy.abdelmalak • 0 • updated 2.5 years ago by Devon Ryan ♦ 89k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 2.5 years ago by lyan.liu • 0 • updated 2.5 years ago by Chris Miller ♦ 20k
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The difference between Copy Number Alterations, Copy Number Aberrations (CNAs) and Copy Number Variations (CNVs).
cna acgh copy number cnv written 3.6 years ago by Ward Weistra • 170 • updated 2.5 years ago by yukselmek • 0
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Sciclone on exome sequencing data
copy number sciclone exome seq written 3.1 years ago by cbst • 150 • updated 2.6 years ago by Chris Miller ♦ 20k
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The outputs of GISTIC
gistic copy number cnv written 2.8 years ago by agicict • 130 • updated 2.7 years ago by Biostar ♦♦ 20
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Why does GISTIC require a markers file?
gistic copy number written 2.9 years ago by Irsan • 6.8k • updated 2.8 years ago by neelablore • 0
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ASCAT for zebrafish samples
copy number genome duplication tumor ploidy written 2.9 years ago by revatidarp • 0
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ChrM in the Varscan2 copynumber output
copy number varscan2 written 3.1 years ago by lhaiyan3 • 30
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Calling CNA from aCGH: Thresholding?
copy number array cgh written 3.2 years ago by Noushin N • 550 • updated 3.2 years ago by Eric T. • 2.4k
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Identify list of reoccurring genes from CNV using GISTIC
gistic reoccurring genes copy number cnv written 3.4 years ago by Chirag Nepal • 2.2k
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