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<prev • 58 results • page 1 of 2 • next >
59
votes
10
answers
8.6k
views
16 follow
10
answers
Counting N'S Within Fasta
fasta perl counts written 6.4 years ago by PoGibas ♦ 4.7k • updated 3 months ago by Biostar ♦♦ 20
1
vote
0
answers
180
views
0
answers
Normalization of read counts
read counts written 3 months ago by dllopezr • 20
1
vote
3
answers
213
views
3
answers
Question about which option should I choose (reversely stranded or forward stranded)
counts rna-seq sequencing written 3 months ago by kamel • 0 • updated 3 months ago by swbarnes2 ♦ 3.9k
0
votes
2
answers
244
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 4 months ago by rmash • 0 • updated 4 months ago by cpad0112 • 8.3k
7
votes
1
answer
501
views
1
answer
Error in extracting Counts from the bam file using htseq-count
htseq bam counts rna-seq written 6 months ago by Biologist • 70 • updated 6 months ago by h.mon ♦ 18k
1
vote
0
answers
245
views
0
answers
Problem bam files 0 counts
mapping rna-seq counts written 6 months ago by Pin.Bioinf • 80
2
votes
2
answers
754
views
2
answers
RNAseq: Mapping to ORFs
htseq-count mapping rna-seq counts written 2.0 years ago by chimeric • 0 • updated 9 months ago by Biostar ♦♦ 20
4
votes
1
answer
637
views
6 follow
1
answer
Raw counts TCGA Firebrowse
tcga counts firebrowse written 10 months ago by Folder40g • 110 • updated 10 months ago by Kevin Blighe ♦ 26k
7
votes
0
answers
416
views
0
answers
What is the difference between counts and expression level?
R expression level counts rna-seq written 14 months ago by iza08.ik • 20
0
votes
0
answers
1.1k
views
0
answers
Large number of Unassigned_NoFeature reads from featureCounts
unassigned tophat2 featurecounts counts rna-seq written 15 months ago by price0416 • 0
0
votes
0
answers
1.8k
views
0
answers
Stranded Paired-End Data With Rsem
next-gen counts written 5.9 years ago by Ge • 80 • updated 17 months ago by Biostar ♦♦ 20
10
votes
2
answers
1.1k
views
6 follow
2
answers
HTSeq not counting all the fragments it should count on a gene
htseq gene expression counts rna-seq written 20 months ago by Macspider • 2.5k
2
votes
0
answers
777
views
0
answers
Count features of particulair reads in a BAM file
bam counts rna-seq written 21 months ago by harmbrugge • 20
0
votes
0
answers
607
views
0
answers
NextSeq/Neoprep Stranded RNA-Seq Count Issue
neoprep rna-seq library counts written 22 months ago by bruce.moran • 410
2
votes
2
answers
1.0k
views
2
answers
Counts from cuffdiff VS featurecounts
cufflinks counts rna-seq written 22 months ago by marina.v.yurieva • 470 • updated 22 months ago by geek_y ♦ 8.7k
1
vote
0
answers
870
views
0
answers
How to identify the miRNA counts column?
bedtools biostat ngs counts mirna written 23 months ago by Shahzad • 10
8
votes
2
answers
909
views
2
answers
Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 24 months ago by camelbbs • 630 • updated 24 months ago by i.sudbery • 2.4k
5
votes
1
answer
982
views
1
answer
Summerizing Mapped Reads
normalization counts written 4.5 years ago by HNK • 110 • updated 2.2 years ago by Biostar ♦♦ 20
8
votes
4
answers
14k
views
13 follow
4
answers
How To Export Normalized Counts From Edger
counts edger written 5.9 years ago by Rm ♦ 7.7k • updated 2.3 years ago by eduardo.andres.leon • 0
2
votes
3
answers
6.1k
views
3
answers
Raw Counts From Cufflinks Output
bedtools fpkm cufflinks counts written 5.5 years ago by Ge • 80 • updated 2.8 years ago by SmallChess • 460
38
votes
4
answers
36k
views
18 follow
4
answers
Sequence Number Count In Fastq.Gz File
fastq sequence counts written 7.2 years ago by Bioscientist • 1.6k • updated 2.9 years ago by Biostar ♦♦ 20
20
votes
7
answers
4.5k
views
12 follow
7
answers
Count 5'End Mapped To A Specific Genomic Position
reads bam counts sam written 5.0 years ago by ifreecell • 170 • updated 3.1 years ago by Brian Bushnell ♦ 15k
2
votes
1
answer
1.2k
views
1
answer
When to use FPKM over raw counts or vice-versa?
fpkm counts rna-seq written 3.7 years ago by NHEJ • 290 • updated 3.7 years ago by Devon Ryan ♦ 82k
9
votes
2
answers
3.0k
views
2
answers
Proper normalization method
normalization counts rna-seq statistics written 3.7 years ago by Cytosine • 430 • updated 3.7 years ago by Asaf ♦ 4.8k
43
votes
4
answers
49k
views
10 follow
4
answers
How Do I Count The Number Values Less Than X In A Column Using R ?
R rna counts edger written 7.4 years ago by Jason • 850 • updated 3.7 years ago by seidel ♦ 6.5k
0
votes
1
answer
731
views
1
answer
Counting Features metaRNA-seq
rpkm bam counts rna-seq written 3.8 years ago by jbran • 0 • updated 3.8 years ago by zorbax • 30
0
votes
2
answers
5.9k
views
2
answers
comparing RSEM and counts data
rna-seq rsem counts written 4.2 years ago by Angel • 200 • updated 4.2 years ago by Charles Warden ♦ 5.1k
0
votes
0
answers
989
views
0
answers
Comparing lists generated by Counter() and .most_common() for AA seqs
python amino acid counts compare lists counter() written 4.2 years ago by st.ph.n • 2.3k
10
votes
2
answers
2.6k
views
2
answers
GTF2/GFF3 "feature" types and expression analysis
gtf bedtools gff counts rna-seq written 4.3 years ago by ndejay • 30 • updated 4.3 years ago by Devon Ryan ♦ 82k
3
votes
2
answers
3.8k
views
2
answers
Generating Counts Data From Fastq Sequence Files
fastq differential-expression counts rna-seq sequencing written 4.4 years ago by josph.sh • 0 • updated 4.4 years ago by Xingyu Yang • 260
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