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DESeq2 counts (inverse relationship)
counts rna-seq written 11 days ago by gradstudentNew • 30 • updated 11 days ago by Istvan Albert ♦♦ 82k
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3
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264
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6 follow
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How to count total small RNAs (known and novel) in my aligned reads?
small rna counts srna written 5 months ago by abdul.suboor123 • 0 • updated 12 days ago by leukosnanos • 0
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108
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RNA seq library size
rnaseq counts written 6 weeks ago by felipead66 • 50
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117
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Is it logical to compare the expression FPKM with the percent methylation data at genes?
methylation counts rna-seq expression-methylation written 6 weeks ago by maria2019 • 90
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How can I normalise GDC TCGA HTSeq Count data (tumour only)
htseq tcga rna-seq normalisation counts written 12 weeks ago by joker33 • 0 • updated 12 weeks ago by mahmoud.s.fahmy • 0
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Why you shouldn't normalize count data using gene-length AND library size for count analysis?
normalization metagenomics deseq2 tpm counts written 3 months ago by sundaresan.vinaik • 10
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213
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Predicted Proteins: Mapping Reads to ORFs
assembly mapping prodigal coverage counts written 6 months ago by Longshotx • 20 • updated 6 months ago by colindaven • 1.9k
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1
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403
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1
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Metric to use for RNAseq expression matrix
expression tpm counts rna-seq batch effect written 6 months ago by RamRS ♦ 25k • updated 6 months ago by i.sudbery ♦ 7.0k
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240
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vcftools counts output not written to file
vcf frequency vcftools snp counts written 9 months ago by spider_monkey • 10 • updated 7 months ago by Biostar ♦♦ 20
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What kind of unit of RNA-seq should be used in machine learning models?
machine learning rna-seq counts written 15 months ago by darklings • 70
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353
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see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 8 months ago by emilybowie2 • 0 • updated 8 months ago by h.mon ♦ 29k
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1
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267
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5 follow
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Triplet frequencies in human genome
genome counts written 8 months ago by 9606 • 320 • updated 8 months ago by finswimmer ♦ 13k
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how to compare 2 rna-seq counts with each other by python
counts rna-seq written 11 months ago by ali.hakimzadeh • 0
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392
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Low HTseq Feature Counts in Subset of RNA-seq Samples
htseq rnaseq feature counts alignment written 11 months ago by kmyers2 • 30
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727
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How to get gene counts with HTseq
reads htseq counts rna-seq written 11 months ago by Michel Edwar • 70
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439
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1
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Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 12 months ago by LuisNagano • 40 • updated 12 months ago by gocougs • 20
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421
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Is Gene's counts done correctly?
counts rna-seq written 15 months ago by Nick • 0
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435
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Making a counts
feauturecounts bam counts rna-seq written 15 months ago by Nick • 0 • updated 15 months ago by h.mon ♦ 29k
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16 follow
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Counting N'S Within Fasta
fasta perl counts written 7.9 years ago by PoGibas ♦ 4.8k • updated 21 months ago by Biostar ♦♦ 20
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425
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Normalization of read counts
read counts written 21 months ago by dllopezr • 60
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Question about which option should I choose (reversely stranded or forward stranded)
counts rna-seq sequencing written 22 months ago by kamel • 30 • updated 22 months ago by swbarnes2 ♦ 7.4k
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Extracting counts of reads into a matrix
reads grep counts unix written 23 months ago by rmash • 0 • updated 23 months ago by cpad0112 ♦ 12k
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6 follow
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Error in extracting Counts from the bam file using htseq-count
htseq bam counts rna-seq written 2.0 years ago by Biologist • 190 • updated 2.0 years ago by h.mon ♦ 29k
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Problem bam files 0 counts
mapping rna-seq counts written 2.0 years ago by Pin.Bioinf • 270
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RNAseq: Mapping to ORFs
htseq-count mapping rna-seq counts written 3.5 years ago by chimeric • 0 • updated 2.3 years ago by Biostar ♦♦ 20
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Raw counts TCGA Firebrowse
tcga counts firebrowse written 2.4 years ago by Folder40g • 120 • updated 2.4 years ago by Kevin Blighe ♦ 54k
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What is the difference between counts and expression level?
R expression level counts rna-seq written 2.7 years ago by iza08.ik • 20
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Large number of Unassigned_NoFeature reads from featureCounts
unassigned tophat2 featurecounts counts rna-seq written 2.8 years ago by price0416 • 0
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Stranded Paired-End Data With Rsem
next-gen counts written 7.4 years ago by Ge • 80 • updated 3.0 years ago by Biostar ♦♦ 20
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HTSeq not counting all the fragments it should count on a gene
htseq gene expression counts rna-seq written 3.2 years ago by Macspider • 3.0k
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