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Removal of 'low' counts before DESeq2 - what threshold?
deseq2 threshold counts rna-seq written 28 days ago by dnljmrs10 • updated 28 days ago by Kevin Blighe70k
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Read Counts For Genes
read counts written 8.9 years ago by Varun Gupta1.2k • updated 10 weeks ago by jerry100
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Different number of sequences on the same file between two tools
sequencing bam genometools pacbio counts written 7 months ago by pablo160 • updated 6 months ago by Biostar ♦♦ 20
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List of uniquely expressed genes
counts rna-seq written 6 months ago by Mozart250
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Correlate ChIP-seq to gene expression
chip-seq featurecounts correlation counts rna-seq written 7 months ago by science_lizard0 • updated 7 months ago by rohitsatyam102270
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Exporting Raw counts into .csv file from seurat object
csv raw counts seurat written 9 months ago by David_emir390 • updated 9 months ago by ccruizm.mv20
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DESeq2 counts (inverse relationship)
counts rna-seq written 12 months ago by gradstudentNew30 • updated 12 months ago by Istvan Albert ♦♦ 86k
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RNA seq library size
rnaseq counts written 13 months ago by felipead6680
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Predicted Proteins: Mapping Reads to ORFs
assembly mapping prodigal coverage counts written 18 months ago by Longshotx 50 • updated 18 months ago by colindaven2.6k
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Metric to use for RNAseq expression matrix
expression tpm counts rna-seq batch effect written 19 months ago by Ram32k • updated 19 months ago by i.sudbery11k
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vcftools counts output not written to file
vcf frequency vcftools snp counts written 21 months ago by spider_monkey10 • updated 19 months ago by Biostar ♦♦ 20
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see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 20 months ago by emilybowie20 • updated 20 months ago by h.mon32k
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Triplet frequencies in human genome
genome counts written 20 months ago by 9606320 • updated 20 months ago by finswimmer14k
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Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 2.0 years ago by LuisNagano80 • updated 2.0 years ago by gocougs20
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Is Gene's counts done correctly?
counts rna-seq written 2.2 years ago by Nick0
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