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1
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1
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101
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1
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Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 10 days ago by LuisNagano • 10 • updated 10 days ago by gocougs • 10
2
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0
answers
141
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0
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Is Gene's counts done correctly?
counts rna-seq written 12 weeks ago by Nick • 0
1
vote
1
answer
209
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1
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What kind of read counts of RNA-seq should be used in machine learning models?
machine learning rna-seq counts written 3 months ago by magicpants • 60
4
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1
answer
193
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5 follow
1
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Making a counts
feauturecounts bam counts rna-seq written 3 months ago by Nick • 0 • updated 3 months ago by h.mon ♦ 23k
59
votes
10
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9.6k
views
16 follow
10
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Counting N'S Within Fasta
fasta perl counts written 6.9 years ago by PoGibas ♦ 4.7k • updated 9 months ago by Biostar ♦♦ 20
1
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0
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272
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0
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Normalization of read counts
read counts written 9 months ago by dllopezr • 40
1
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3
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379
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3
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Question about which option should I choose (reversely stranded or forward stranded)
counts rna-seq sequencing written 10 months ago by kamel • 0 • updated 10 months ago by swbarnes2 ♦ 4.8k
0
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2
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367
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5 follow
2
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Extracting counts of reads into a matrix
reads grep counts unix written 11 months ago by rmash • 0 • updated 11 months ago by cpad0112 ♦ 11k
7
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1
answer
950
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1
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Error in extracting Counts from the bam file using htseq-count
htseq bam counts rna-seq written 12 months ago by Biologist • 140 • updated 12 months ago by h.mon ♦ 23k
1
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0
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357
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0
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Problem bam files 0 counts
mapping rna-seq counts written 12 months ago by Pin.Bioinf • 230
2
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2
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880
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2
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RNAseq: Mapping to ORFs
htseq-count mapping rna-seq counts written 2.5 years ago by chimeric • 0 • updated 15 months ago by Biostar ♦♦ 20
4
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1
answer
1.0k
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6 follow
1
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Raw counts TCGA Firebrowse
tcga counts firebrowse written 17 months ago by Folder40g • 110 • updated 17 months ago by Kevin Blighe ♦ 37k
7
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0
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541
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0
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What is the difference between counts and expression level?
R expression level counts rna-seq written 20 months ago by iza08.ik • 20
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0
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1.7k
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0
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Large number of Unassigned_NoFeature reads from featureCounts
unassigned tophat2 featurecounts counts rna-seq written 21 months ago by price0416 • 0
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0
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1.9k
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0
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Stranded Paired-End Data With Rsem
next-gen counts written 6.4 years ago by Ge • 80 • updated 23 months ago by Biostar ♦♦ 20
10
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2
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1.4k
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6 follow
2
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HTSeq not counting all the fragments it should count on a gene
htseq gene expression counts rna-seq written 2.2 years ago by Macspider • 2.8k
2
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0
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955
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0
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Count features of particulair reads in a BAM file
bam counts rna-seq written 2.3 years ago by harmbrugge • 20
0
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0
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710
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0
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NextSeq/Neoprep Stranded RNA-Seq Count Issue
neoprep rna-seq library counts written 2.4 years ago by bruce.moran • 510
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2
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1.5k
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2
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Counts from cuffdiff VS featurecounts
cufflinks counts rna-seq written 2.4 years ago by marina.v.yurieva • 470 • updated 2.4 years ago by geek_y ♦ 9.1k
1
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0
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1.0k
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0
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How to identify the miRNA counts column?
bedtools biostat ngs counts mirna written 2.4 years ago by Shahzad • 10
8
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2
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1.1k
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2
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Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 2.5 years ago by camelbbs • 650 • updated 2.5 years ago by i.sudbery ♦ 3.8k
5
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1
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1.1k
views
1
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Summerizing Mapped Reads
normalization counts written 5.0 years ago by HNK • 120 • updated 2.8 years ago by Biostar ♦♦ 20
9
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4
answers
15k
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13 follow
4
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How To Export Normalized Counts From Edger
counts edger written 6.4 years ago by Rm ♦ 7.8k • updated 2.8 years ago by eduardo.andres.leon • 0
2
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3
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6.3k
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3
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Raw Counts From Cufflinks Output
bedtools fpkm cufflinks counts written 6.0 years ago by Ge • 80 • updated 3.3 years ago by SmallChess • 470
39
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4
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39k
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18 follow
4
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Sequence Number Count In Fastq.Gz File
fastq sequence counts written 7.7 years ago by Bioscientist • 1.6k • updated 3.5 years ago by Biostar ♦♦ 20
20
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7
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5.0k
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12 follow
7
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Count 5'End Mapped To A Specific Genomic Position
reads bam counts sam written 5.5 years ago by ifreecell • 170 • updated 3.6 years ago by Brian Bushnell ♦ 16k
2
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1
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1.4k
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1
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When to use FPKM over raw counts or vice-versa?
fpkm counts rna-seq written 4.2 years ago by NHEJ • 320 • updated 4.2 years ago by Devon Ryan ♦ 88k
9
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2
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3.3k
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2
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Proper normalization method
normalization counts rna-seq statistics written 4.2 years ago by Cytosine • 440 • updated 4.2 years ago by Asaf ♦ 5.2k
43
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4
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54k
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10 follow
4
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How Do I Count The Number Values Less Than X In A Column Using R ?
R rna counts edger written 7.9 years ago by Jason • 870 • updated 4.3 years ago by seidel ♦ 6.7k
0
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1
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809
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1
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Counting Features metaRNA-seq
rpkm bam counts rna-seq written 4.3 years ago by jbran • 0 • updated 4.3 years ago by zorbax • 30
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