Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 84 results • page 1 of 3 • next >
0
votes
1
answer
68
views
1
answer
List of uniquely expressed genes
counts rna-seq written 2 days ago by Mozart • 200
0
votes
0
answers
110
views
0
answers
Different number of sequences on the same file between two tools
sequencing bam genometools pacbio counts written 5 weeks ago by vincentpailler • 140 • updated 9 days ago by Biostar ♦♦ 20
0
votes
0
answers
87
views
0
answers
How to extract reads on positive strand for a specific region from bam?
samtools rna-seq strand counts written 10 days ago by venkat • 0
2
votes
1
answer
193
views
1
answer
Correlate ChIP-seq to gene expression
chip-seq featurecounts correlation counts rna-seq written 4 weeks ago by science_lizard • 0 • updated 29 days ago by rohitsatyam102 • 170
1
vote
1
answer
108
views
1
answer
count reads (.sam) mapped to scaffolds with non-standard headers
samtools bbmap sam counts written 8 weeks ago by rakshy • 0
1
vote
1
answer
471
views
1
answer
Exporting Raw counts into .csv file from seurat object
csv raw counts seurat written 3 months ago by David_emir • 370 • updated 11 weeks ago by ccruizm.mv • 10
1
vote
0
answers
236
views
0
answers
What causes strange oscillations in the count distribution of Salmon and STAR aligned gene tables?
htseq salmon star filtering counts written 4 months ago by Gabriel • 60
1
vote
0
answers
195
views
0
answers
sample-specific filtering of counts matrix
deseq2 counts rna-seq condition written 5 months ago by Assa Yeroslaviz • 1.4k
0
votes
0
answers
182
views
0
answers
DESeq2 counts (inverse relationship)
counts rna-seq written 6 months ago by gradstudentNew • 30 • updated 6 months ago by Istvan Albert ♦♦ 84k
1
vote
3
answers
460
views
6 follow
3
answers
How to count total small RNAs (known and novel) in my aligned reads?
small rna counts srna written 11 months ago by abdul.suboor123 • 0 • updated 6 months ago by leukosnanos • 0
1
vote
0
answers
287
views
0
answers
RNA seq library size
rnaseq counts written 7 months ago by felipead66 • 70
1
vote
0
answers
199
views
0
answers
Is it logical to compare the expression FPKM with the percent methylation data at genes?
methylation counts rna-seq expression-methylation written 7 months ago by maria2019 • 100
1
vote
2
answers
599
views
2
answers
How can I normalise GDC TCGA HTSeq Count data (tumour only)
htseq tcga rna-seq normalisation counts written 8 months ago by joker33 • 0 • updated 8 months ago by mahmoud.s.fahmy • 0
4
votes
3
answers
970
views
5 follow
3
answers
Why you shouldn't normalize count data using gene-length AND library size for count analysis?
normalization metagenomics deseq2 tpm counts written 9 months ago by sundaresan.vinaik • 10
1
vote
1
answer
280
views
1
answer
Predicted Proteins: Mapping Reads to ORFs
assembly mapping prodigal coverage counts written 12 months ago by Longshotx • 50 • updated 12 months ago by colindaven • 2.3k
8
votes
1
answer
588
views
1
answer
Metric to use for RNAseq expression matrix
expression tpm counts rna-seq batch effect written 12 months ago by RamRS ♦ 28k • updated 12 months ago by i.sudbery ♦ 8.5k
1
vote
0
answers
329
views
0
answers
vcftools counts output not written to file
vcf frequency vcftools snp counts written 15 months ago by spider_monkey • 10 • updated 13 months ago by Biostar ♦♦ 20
3
votes
2
answers
1.3k
views
5 follow
2
answers
What kind of unit of RNA-seq should be used in machine learning models?
machine learning rna-seq counts written 21 months ago by darklings • 90
7
votes
1
answer
526
views
1
answer
see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 14 months ago by emilybowie2 • 0 • updated 13 months ago by h.mon ♦ 30k
5
votes
1
answer
385
views
5 follow
1
answer
Triplet frequencies in human genome
genome counts written 14 months ago by 9606 • 320 • updated 14 months ago by finswimmer ♦ 13k
2
votes
0
answers
607
views
0
answers
how to compare 2 rna-seq counts with each other by python
counts rna-seq written 16 months ago by ali.hakimzadeh • 10
0
votes
0
answers
517
views
0
answers
Low HTseq Feature Counts in Subset of RNA-seq Samples
htseq rnaseq feature counts alignment written 17 months ago by kmyers2 • 40
0
votes
0
answers
1.1k
views
0
answers
How to get gene counts with HTseq
reads htseq counts rna-seq written 17 months ago by Michel Edwar • 70
2
votes
1
answer
642
views
1
answer
Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 18 months ago by LuisNagano • 40 • updated 18 months ago by gocougs • 20
2
votes
0
answers
531
views
0
answers
Is Gene's counts done correctly?
counts rna-seq written 20 months ago by Nick • 0
4
votes
1
answer
580
views
5 follow
1
answer
Making a counts
feauturecounts bam counts rna-seq written 21 months ago by Nick • 0 • updated 21 months ago by h.mon ♦ 30k
64
votes
10
answers
12k
views
17 follow
10
answers
Counting N'S Within Fasta
fasta perl counts written 8.4 years ago by PoGibas ♦ 4.8k • updated 2.2 years ago by Biostar ♦♦ 20
1
vote
0
answers
483
views
0
answers
Normalization of read counts
read counts written 2.3 years ago by dllopezr • 60
1
vote
3
answers
1.1k
views
3
answers
Question about which option should I choose (reversely stranded or forward stranded)
counts rna-seq sequencing written 2.3 years ago by kamel • 30 • updated 2.3 years ago by swbarnes2 ♦ 8.2k
0
votes
2
answers
679
views
5 follow
2
answers
Extracting counts of reads into a matrix
reads grep counts unix written 2.4 years ago by rmash • 20 • updated 2.4 years ago by cpad0112 ♦ 13k
<prev • 84 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • United States, 1 minute ago
  • Seattle, WA USA, 7 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 720 users visited in the last hour