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How to count total small RNAs (known and novel) in my aligned reads?
small rna counts srna written 8 days ago by abdul.suboor123 • 0 • updated 8 days ago by shawn.w.foley • 1.0k
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Predicted Proteins: Mapping Reads to ORFs
assembly mapping prodigal coverage counts written 5 weeks ago by Longshotx • 20 • updated 5 weeks ago by colindaven • 1.7k
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248
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1
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Metric to use for RNAseq expression matrix
expression tpm counts rna-seq batch effect written 6 weeks ago by RamRS ♦ 24k • updated 6 weeks ago by i.sudbery ♦ 5.3k
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vcftools counts output not written to file
vcf frequency vcftools snp counts written 4 months ago by spider_monkey • 10 • updated 9 weeks ago by Biostar ♦♦ 20
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What kind of unit of RNA-seq should be used in machine learning models?
machine learning rna-seq counts written 10 months ago by magicpants • 60
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see reads in .bam file, no counts after HTseq
htseq counts rna-seq written 3 months ago by emilybowie2 • 0 • updated 12 weeks ago by h.mon ♦ 27k
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Triplet frequencies in human genome
genome counts written 3 months ago by 9606 • 320 • updated 3 months ago by finswimmer ♦ 12k
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how to compare 2 rna-seq counts with each other by python
counts rna-seq written 5 months ago by ali.hakimzadeh • 0
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241
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Low HTseq Feature Counts in Subset of RNA-seq Samples
htseq rnaseq feature counts alignment written 6 months ago by kmyers2 • 20
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How to get gene counts with HTseq
reads htseq counts rna-seq written 6 months ago by Michel Edwar • 70
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Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 7 months ago by LuisNagano • 10 • updated 7 months ago by gocougs • 20
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303
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Is Gene's counts done correctly?
counts rna-seq written 9 months ago by Nick • 0
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Making a counts
feauturecounts bam counts rna-seq written 10 months ago by Nick • 0 • updated 10 months ago by h.mon ♦ 27k
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Counting N'S Within Fasta
fasta perl counts written 7.5 years ago by PoGibas ♦ 4.8k • updated 16 months ago by Biostar ♦♦ 20
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Normalization of read counts
read counts written 16 months ago by dllopezr • 40
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Question about which option should I choose (reversely stranded or forward stranded)
counts rna-seq sequencing written 16 months ago by kamel • 30 • updated 16 months ago by swbarnes2 ♦ 6.5k
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Extracting counts of reads into a matrix
reads grep counts unix written 18 months ago by rmash • 0 • updated 18 months ago by cpad0112 ♦ 11k
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Error in extracting Counts from the bam file using htseq-count
htseq bam counts rna-seq written 19 months ago by Biologist • 150 • updated 19 months ago by h.mon ♦ 27k
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Problem bam files 0 counts
mapping rna-seq counts written 19 months ago by Pin.Bioinf • 260
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RNAseq: Mapping to ORFs
htseq-count mapping rna-seq counts written 3.1 years ago by chimeric • 0 • updated 22 months ago by Biostar ♦♦ 20
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Raw counts TCGA Firebrowse
tcga counts firebrowse written 23 months ago by Folder40g • 120 • updated 23 months ago by Kevin Blighe ♦ 48k
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What is the difference between counts and expression level?
R expression level counts rna-seq written 2.3 years ago by iza08.ik • 20
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Large number of Unassigned_NoFeature reads from featureCounts
unassigned tophat2 featurecounts counts rna-seq written 2.3 years ago by price0416 • 0
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Stranded Paired-End Data With Rsem
next-gen counts written 7.0 years ago by Ge • 80 • updated 2.5 years ago by Biostar ♦♦ 20
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HTSeq not counting all the fragments it should count on a gene
htseq gene expression counts rna-seq written 2.8 years ago by Macspider • 2.9k
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Count features of particulair reads in a BAM file
bam counts rna-seq written 2.8 years ago by harmbrugge • 20
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NextSeq/Neoprep Stranded RNA-Seq Count Issue
neoprep rna-seq library counts written 2.9 years ago by bruce.moran • 650
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Counts from cuffdiff VS featurecounts
cufflinks counts rna-seq written 3.0 years ago by marina.v.yurieva • 480 • updated 2.9 years ago by geek_y ♦ 9.8k
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How to identify the miRNA counts column?
bedtools biostat ngs counts mirna written 3.0 years ago by Shahzad • 10
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Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 3.1 years ago by camelbbs • 650 • updated 3.1 years ago by i.sudbery ♦ 5.3k
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