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1
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1
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91
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1
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What kind of read counts of RNA-seq should be used in machine learning models?
machine learning rna-seq counts written 6 days ago by magicpants • 40
4
votes
1
answer
114
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5 follow
1
answer
Making a counts
feauturecounts bam counts rna-seq written 13 days ago by Nick • 0 • updated 13 days ago by h.mon ♦ 21k
59
votes
10
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9.2k
views
16 follow
10
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Counting N'S Within Fasta
fasta perl counts written 6.6 years ago by PoGibas ♦ 4.7k • updated 6 months ago by Biostar ♦♦ 20
1
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0
answers
226
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0
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Normalization of read counts
read counts written 6 months ago by dllopezr • 40
1
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3
answers
305
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3
answers
Question about which option should I choose (reversely stranded or forward stranded)
counts rna-seq sequencing written 6 months ago by kamel • 0 • updated 6 months ago by swbarnes2 ♦ 4.5k
0
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2
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301
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5 follow
2
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Extracting counts of reads into a matrix
reads grep counts unix written 7 months ago by rmash • 0 • updated 7 months ago by cpad0112 • 10k
7
votes
1
answer
753
views
1
answer
Error in extracting Counts from the bam file using htseq-count
htseq bam counts rna-seq written 9 months ago by Biologist • 90 • updated 9 months ago by h.mon ♦ 21k
1
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0
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306
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0
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Problem bam files 0 counts
mapping rna-seq counts written 9 months ago by Pin.Bioinf • 170
2
votes
2
answers
818
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2
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RNAseq: Mapping to ORFs
htseq-count mapping rna-seq counts written 2.3 years ago by chimeric • 0 • updated 12 months ago by Biostar ♦♦ 20
4
votes
1
answer
842
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6 follow
1
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Raw counts TCGA Firebrowse
tcga counts firebrowse written 13 months ago by Folder40g • 110 • updated 13 months ago by Kevin Blighe ♦ 32k
7
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0
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475
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0
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What is the difference between counts and expression level?
R expression level counts rna-seq written 17 months ago by iza08.ik • 20
0
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0
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1.4k
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0
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Large number of Unassigned_NoFeature reads from featureCounts
unassigned tophat2 featurecounts counts rna-seq written 18 months ago by price0416 • 0
0
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0
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1.9k
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0
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Stranded Paired-End Data With Rsem
next-gen counts written 6.2 years ago by Ge • 80 • updated 20 months ago by Biostar ♦♦ 20
10
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2
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1.3k
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6 follow
2
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HTSeq not counting all the fragments it should count on a gene
htseq gene expression counts rna-seq written 23 months ago by Macspider • 2.6k
2
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0
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854
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0
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Count features of particulair reads in a BAM file
bam counts rna-seq written 2.0 years ago by harmbrugge • 20
0
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0
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663
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0
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NextSeq/Neoprep Stranded RNA-Seq Count Issue
neoprep rna-seq library counts written 2.1 years ago by bruce.moran • 420
2
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2
answers
1.3k
views
2
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Counts from cuffdiff VS featurecounts
cufflinks counts rna-seq written 2.1 years ago by marina.v.yurieva • 470 • updated 2.1 years ago by geek_y ♦ 8.8k
1
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0
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945
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0
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How to identify the miRNA counts column?
bedtools biostat ngs counts mirna written 2.2 years ago by Shahzad • 10
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2
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1.0k
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2
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Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 2.2 years ago by camelbbs • 630 • updated 2.2 years ago by i.sudbery • 2.7k
5
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1
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1.0k
views
1
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Summerizing Mapped Reads
normalization counts written 4.8 years ago by HNK • 110 • updated 2.5 years ago by Biostar ♦♦ 20
9
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4
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15k
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13 follow
4
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How To Export Normalized Counts From Edger
counts edger written 6.1 years ago by Rm ♦ 7.8k • updated 2.6 years ago by eduardo.andres.leon • 0
2
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3
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6.2k
views
3
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Raw Counts From Cufflinks Output
bedtools fpkm cufflinks counts written 5.8 years ago by Ge • 80 • updated 3.0 years ago by SmallChess • 460
39
votes
4
answers
38k
views
18 follow
4
answers
Sequence Number Count In Fastq.Gz File
fastq sequence counts written 7.4 years ago by Bioscientist • 1.6k • updated 3.2 years ago by Biostar ♦♦ 20
20
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7
answers
4.8k
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12 follow
7
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Count 5'End Mapped To A Specific Genomic Position
reads bam counts sam written 5.2 years ago by ifreecell • 170 • updated 3.4 years ago by Brian Bushnell ♦ 16k
2
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1
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1.3k
views
1
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When to use FPKM over raw counts or vice-versa?
fpkm counts rna-seq written 3.9 years ago by NHEJ • 290 • updated 3.9 years ago by Devon Ryan ♦ 86k
9
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2
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3.1k
views
2
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Proper normalization method
normalization counts rna-seq statistics written 4.0 years ago by Cytosine • 430 • updated 4.0 years ago by Asaf ♦ 5.0k
43
votes
4
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52k
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10 follow
4
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How Do I Count The Number Values Less Than X In A Column Using R ?
R rna counts edger written 7.6 years ago by Jason • 870 • updated 4.0 years ago by seidel ♦ 6.6k
0
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1
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775
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1
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Counting Features metaRNA-seq
rpkm bam counts rna-seq written 4.1 years ago by jbran • 0 • updated 4.1 years ago by zorbax • 30
0
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2
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6.3k
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2
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comparing RSEM and counts data
rna-seq rsem counts written 4.4 years ago by Angel • 200 • updated 4.4 years ago by Charles Warden ♦ 5.6k
0
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1.2k
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0
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Comparing lists generated by Counter() and .most_common() for AA seqs
python amino acid counts compare lists counter() written 4.4 years ago by st.ph.n • 2.4k
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