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<prev • 329 results • page 1 of 11 • next >
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Extract flanking regions from bam files based on coverage threshold
bam flanking region coverage snp mapping written 1 day ago by laura.bertola • 0
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1
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counting the number of reads in FASTQ files
next-gen coverage sequencing written 5 days ago by Ric • 280 • updated 5 days ago by swbarnes2 ♦ 7.0k
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Plotting - Coverage Analysyis
R sequencing python coverage plot written 9 days ago by Gene • 10 • updated 9 days ago by zx8754 ♦ 8.4k
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Compare expression (coverage) of a set of genomic regions vs background
expression coverage rna-seq written 10 days ago by A. Domingues • 2.1k
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Combining files based on chromosome and position next to each other - column vise
assembly coverage sequencing written 12 days ago by Gene • 10 • updated 12 days ago by Pierre Lindenbaum ♦ 124k
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how to visualize rna-seq coverage track in igv?
normalization bam coverage rna-seq igv written 20 days ago by Zee_S • 50 • updated 20 days ago by jared.andrews07 • 4.0k
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164
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Calculate the area covered more than a certain depth
next-gen coverage bam sequencing written 5 weeks ago by Floydian_slip • 130 • updated 5 weeks ago by yztxwd • 170
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1
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181
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1
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Query cover in global alignment
global alignment needleman coverage written 6 weeks ago by el97004 • 10 • updated 6 weeks ago by gb • 1.2k
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Biopython BLAST: how to include minimum coverage in the parameters?
biopython blast coverage written 8 weeks ago by lea.picard • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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Samtools Read Coverage At Bp And Call % At Each Base
read samtools coverage written 7.4 years ago by diltsjeri • 440 • updated 9 weeks ago by ATpoint ♦ 26k
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279
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Understanding coverage in genome assemblies
assembly coverage blobtools written 3 months ago by yp19 • 50 • updated 3 months ago by h.mon ♦ 28k
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154
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1
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Predicted Proteins: Mapping Reads to ORFs
assembly mapping prodigal coverage counts written 3 months ago by Longshotx • 20 • updated 3 months ago by colindaven • 1.8k
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1
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Draw coverage plot from bed file
deeptools coverage bed file written 3 months ago by ben.kunfang • 10 • updated 3 months ago by Alex Reynolds ♦ 29k
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146
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Genome coverage within specified regions
bedtools genomecov coverage written 3 months ago by ilovesuperheroes1993 • 0 • updated 3 months ago by ATpoint ♦ 26k
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Calculating effective coverage/callable genome for variant calling from a bam file
genome variant-calling bam bigwig coverage written 3 months ago by Rubal • 250 • updated 3 months ago by Pierre Lindenbaum ♦ 124k
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3
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279
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5 follow
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Export Coverage on IGV
igv coverage sequencing written 4 months ago by callieboskin • 0 • updated 4 months ago by trausch • 1.4k
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150
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Coverage table and exons
coverage database mysql ngs exons written 5 months ago by Swimming bird • 20
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what is the best way to calculate significant differences in tss profiles?
differences coverage tss written 8 months ago by Lila M • 800 • updated 5 months ago by Biostar ♦♦ 20
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Comparing metrics of two exome: how to interpret higher median coverage but lower mean target coverage?
exome median metrics coverage mean written 6 months ago by pegeot.henri • 0 • updated 6 months ago by trausch • 1.4k
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14 follow
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bedtools coverage gives error received illegal bin number, but that number isn't in my data!
bedtools bin chip-seq coverage error written 2.8 years ago by tara.alpert • 30 • updated 6 months ago by iqra • 0
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12 follow
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Comparing And Plotting Coverage Between Two Bam Files
genome bam coverage chromosome written 7.5 years ago by Rubal7 • 770 • updated 6 months ago by john.e.major.jr • 0
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CollectHsMetrics base coverage output has overlapping targets
picard coverage written 8 months ago by blazer9131 • 10 • updated 6 months ago by Biostar ♦♦ 20
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1
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1
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MutSig coverage table
wig mutsig coverage written 5.1 years ago by sadiq.saleem.09 • 10
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1
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Coverage Calculation
next-gen coverage written 7.0 years ago by Raygozak • 1.3k • updated 7 months ago by Biostar ♦♦ 20
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Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 4.7 years ago by Matt Corley • 40 • updated 7 months ago by Biostar ♦♦ 20
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Depth of coverage of Bed file regions?
bedtools bed coverage genome written 8 months ago by Jon17 • 10 • updated 8 months ago by h.mon ♦ 28k
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1
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7 follow
1
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Extract coverage from each nucleotide position of a genome in a bam file
bed bam coverage written 8 months ago by Genetics • 1.5k
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272
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TDF Coverage in Figure
igv rna-seq coverage tdf m6a written 8 months ago by Charles Warden ♦ 7.4k
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6 follow
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Median coverage from BAM file
dna-seq coverage written 22 months ago by rmf • 750
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How to calculate read depth for a specific gene list?
readdepth interesct coverage written 9 months ago by Lila M • 800
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