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<prev • 292 results • page 1 of 10 • next >
0
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Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup bwa coverage written 6.5 years ago by Sen • 0 • updated 1 day ago by Biostar ♦♦ 20
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0
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61
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Calculating breadth of coverage for TCGA Whole Exome Sequencing data
tcga coverage written 3 days ago by steve • 1.7k
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1.2k
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0
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coverage in amplicon sequecing method
coverage written 2.6 years ago by Picasa • 380 • updated 5 days ago by Ram ♦ 17k
2
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0
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932
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I have some queries on coverage
rnaseq dnaseq coverage snp written 2.6 years ago by bioinforesearchquestions • 160 • updated 5 days ago by Ram ♦ 17k
8
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2
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116
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5 follow
2
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Good mean coverage but big std in coverage
bamqc rnaseq qualimap coverage written 7 days ago by Pin.Bioinf • 150
1
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2
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111
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2
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what is the conventional apporach to calculate depth of coverage?
wgs dnaseq coverage snp depth written 15 days ago by serpalma.v • 10 • updated 14 days ago by finswimmer ♦ 5.3k
24
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1
answer
11k
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1
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samtools bedcov vs. bedtools coverage
dna-seq coverage written 2.3 years ago by Dataman • 260 • updated 15 days ago by Ram ♦ 17k
1
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1
answer
170
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1
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Giga base or Giga byte
gb assembly coverage written 4 weeks ago by Shawrob400 • 0
7
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4
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1.5k
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5 follow
4
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Confirming Structural Variants In The Genome
genome coverage written 6.2 years ago by Rubal7 • 700 • updated 5 weeks ago by Biostar ♦♦ 20
223
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11
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125k
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108 follow
11
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Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 7.7 years ago by Biomed ♦ 4.4k • updated 6 weeks ago by WouterDeCoster ♦ 32k
11
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3
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3.7k
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10 follow
3
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Visualizing Coverage Of Ngs Reads Across Reference Genome
coverage sequencing written 5.2 years ago by nicolazilio • 20 • updated 7 weeks ago by Biostar ♦♦ 20
11
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4
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3.8k
views
4
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Calculate percentage of bases covered less than nX in targeted sequencing experiment
ngs coverage targeted sequencing written 3.7 years ago by Ram ♦ 17k • updated 8 weeks ago by toni • 2.1k
1
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1
answer
273
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1
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relationship between DP and variant call quality
read depth variant quality coverage dp written 8 weeks ago by miaowzai • 70 • updated 8 weeks ago by finswimmer ♦ 5.3k
1
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163
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0
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Extract the overlap of well-covered regions across multiple samples
wgs coverage written 9 weeks ago by DVA • 470
71
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6
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37k
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42 follow
6
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How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 4.3 years ago by krithika.gu • 230 • updated 9 weeks ago by Fred0730 • 30
4
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0
answers
175
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0
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Does samtools depth know how to handle paired-end reads
samtools coverage written 12 weeks ago by roy.granit • 740 • updated 12 weeks ago by ATpoint ♦ 7.5k
0
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0
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116
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0
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Coverage variance and mean coverage
sequence coverage tool written 3 months ago by ash • 10 • updated 3 months ago by finswimmer ♦ 5.3k
2
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2
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170
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2
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How many reads cover the exon per gene from a BAM? The gene (or exon) is totally covered by BAM file?
gene bam coverage written 3 months ago by Andrea Spinelli • 10 • updated 3 months ago by Devon Ryan ♦ 84k
4
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1
answer
227
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1
answer
Formula for extracting per base read depth/per base genome coverage from a SAM file?
bedtools alignment samtools sam coverage written 3 months ago by Diploid Progenitor • 10 • updated 3 months ago by Devon Ryan ♦ 84k
0
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0
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215
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0
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Subset BAM file based on selected coverage, PacBio reads
arrow pbalign coverage bam pacbio written 3 months ago by MyrNat • 0
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226
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0
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Normalization amplicon data using mean depth and coverage
normalization amplicon coverage depth written 4 months ago by sovrappensiero • 10
8
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1
answer
265
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1
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Coverage in whole genome sequencing
wgs coverage written 4 months ago by Tania • 120 • updated 4 months ago by Sharon • 340
7
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0
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298
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0
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Is there any precedent for considering marked duplicates when calculating coverage in high-depth whole-exome sequencing?
exome duplicates exome-seq coverage written 4 months ago by Dan D ♦ 6.6k
0
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0
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130
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0
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Transcript coverage considering exons
assembly coverage rna-seq written 4 months ago by MarVi • 0
32
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3
answers
12k
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15 follow
3
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How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
bed chip-seq coverage statistics written 7.6 years ago by Stew • 1.4k • updated 4 months ago by Hmd • 10
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0
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177
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0
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metagenomic assembly coverage, for multiple samples
bowtie2 metagenomics samtools coverage mpileup written 4 months ago by willnotburn • 40
2
votes
1
answer
308
views
1
answer
metagenomic assembly has low coverage; what are my options?
assembly trimming metagenomic coverage megahit written 5 months ago by willnotburn • 40 • updated 5 months ago by h.mon ♦ 19k
2
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2
answers
365
views
7 follow
2
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Judging best assembly
assembly cut off kmer coverage velvet written 5 months ago by deepti1rao • 0 • updated 5 months ago by Rohit • 1.3k
0
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0
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357
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0
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Genome Assembly at low coverage?
assembly coverage written 6 months ago by AP • 90
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307
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0
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How to calculate standard deviation of coverage for each scaffold in a pileup file?
perl coverage pileup sequencing written 6 months ago by PollardMD • 0
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