Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: coverage • reset
or   Classic search
<prev • 276 results • page 1 of 10 • next >
2
votes
1
answer
152
views
1
answer
metagenomic assembly has low coverage; what are my options?
assembly trimming metagenomic coverage megahit written 14 days ago by willnotburn • 20 • updated 14 days ago by h.mon ♦ 13k
2
votes
2
answers
194
views
7 follow
2
answers
Judging best assembly
assembly cut off kmer coverage velvet written 22 days ago by deepti1rao • 0 • updated 16 days ago by Rohit • 1.3k
0
votes
0
answers
135
views
0
answers
Genome Assembly at low coverage?
assembly coverage written 4 weeks ago by AP • 80
0
votes
0
answers
165
views
0
answers
How to calculate standard deviation of coverage for each scaffold in a pileup file?
perl coverage pileup sequencing written 5 weeks ago by PollardMD • 0
4
votes
2
answers
199
views
2
answers
Tools to assess coverage and error rate at specific position
alignment error rate coverage sequencing written 8 weeks ago by prishly • 0 • updated 8 weeks ago by dariober ♦ 9.0k
0
votes
0
answers
132
views
0
answers
Coverage of methylation txt files
methylation coverage bismark written 9 weeks ago by Pin.Bioinf • 50
1
vote
1
answer
127
views
1
answer
Mean coverage in Ion Torrent PGM
ion torrent ngs coverage written 10 weeks ago by Abdul Rafay Khan • 790 • updated 10 weeks ago by haro • 220
1
vote
1
answer
158
views
1
answer
How does picard CollectWGSmetrics estimate coverage on Soft-Clipped Reads?
wgs coverage written 10 weeks ago by knagul • 10 • updated 10 weeks ago by Dan D ♦ 6.4k
2
votes
1
answer
155
views
1
answer
Calculating gene/exon coverage
coverage written 11 weeks ago by Joshi • 0 • updated 11 weeks ago by Macspider • 2.4k
7
votes
1
answer
363
views
1
answer
Tool: mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
exome wgs depth coverage tool written 11 weeks ago by brentp ♦ 22k • updated 11 weeks ago by ATpoint • 3.5k
5
votes
1
answer
590
views
1
answer
Calculating the gene coverage in StringTie
gene stringtie coverage rna-seq written 9 months ago by sjbasu • 20 • updated 12 weeks ago by geo.pertea • 60
0
votes
2
answers
790
views
2
answers
Bedtools coverage adding feature scores
bedtools score coverage written 23 months ago by jaime.alvarez.benayas • 0 • updated 3 months ago by Alex Reynolds ♦ 23k
1
vote
2
answers
307
views
2
answers
Median coverage from BAM file
dna-seq coverage written 3 months ago by rmf • 250 • updated 3 months ago by Alex Reynolds ♦ 23k
1
vote
0
answers
170
views
0
answers
Excluding reads for Coverage Calculation in given regions
bedtools bam coverage written 3 months ago by finswimmer • 1.5k • updated 3 months ago by Pierre Lindenbaum ♦ 106k
2
votes
3
answers
455
views
3
answers
Do I need to provide the Illumina's target region bed file for qualimap?
dnaseq depth wes coverage exome sequencing written 6 months ago by bioinforesearchquestions • 120 • updated 3 months ago by Raony Guimarães • 820
0
votes
1
answer
218
views
1
answer
WES chromosome Y off-target reads coverage compare to autosome
alignment coverage sequencing written 3 months ago by hujingchu • 0 • updated 3 months ago by markus.riester • 240
12
votes
4
answers
2.9k
views
8 follow
4
answers
bedtools coverage gives error received illegal bin number, but that number isn't in my data!
bedtools bin chip-seq coverage error written 14 months ago by tara.alpert • 30 • updated 4 months ago by brianpenghe • 0
4
votes
3
answers
243
views
3
answers
How can I calculate coverage from the base frequencies file?
frequency coverage basefrequency written 4 months ago by SaltedPork • 70 • updated 4 months ago by cpad0112 • 4.5k
6
votes
1
answer
384
views
5 follow
1
answer
Inconsistent Coverage on X chromosome between genders
wes coverage written 5 months ago by kuckunniwid • 20
3
votes
0
answers
343
views
0
answers
Create mean coverage plot
R ngs coverage sequencing written 5 months ago by Bella_p • 50
0
votes
1
answer
230
views
1
answer
Physical/Fragment Coverage for Paired-Ends: Read Length
coverage written 5 months ago by QVINTVS_FABIVS_MAXIMVS • 2.0k • updated 5 months ago by Devon Ryan ♦ 78k
1
vote
2
answers
326
views
2
answers
Is cnvkit coverage output split into non-overlapping segments?
exome cnvkit coverage written 6 months ago by fbrundu • 260 • updated 6 months ago by Eric T. • 2.1k
8
votes
1
answer
465
views
1
answer
Compute mean depth coverage for exome data with paired end, overlapping, features
exome bam coverage depth written 6 months ago by fbrundu • 260 • updated 6 months ago by Kevin Blighe ♦ 17k
215
votes
11
answers
118k
views
104 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 7.2 years ago by Biomed ♦ 4.4k • updated 6 months ago by bioinfo8 • 90
9
votes
2
answers
397
views
2
answers
Extracting coverage per base pair
alignment coverage written 6 months ago by Burgenix • 0 • updated 6 months ago by Samarth Kulshrestha • 110
1
vote
0
answers
505
views
0
answers
find snp depth and total depth
coverage snp written 8 months ago by paumarc • 0 • updated 6 months ago by Biostar ♦♦ 20
3
votes
1
answer
289
views
1
answer
Tools to generate coverage plots for the sequenced virus reads
dnaseq coverage snp virus written 7 months ago by bioinforesearchquestions • 120 • updated 7 months ago by Brian Bushnell ♦ 15k
0
votes
1
answer
1.6k
views
1
answer
MutSig coverage table
wig mutsig coverage written 3.5 years ago by sadiq.saleem.09 • 0 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
292
views
0
answers
Retrieving coverage image
next-gen igv coverage rna-seq expression written 7 months ago by BPors • 30
0
votes
3
answers
624
views
3
answers
Calculating coverage for WGS, WES and RNASeq
wgs sequence coverage wes rna-seq written 7 months ago by Joshi • 0 • updated 7 months ago by Philipp Bayer ♦ 5.4k
<prev • 276 results • page 1 of 10 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 3 minutes ago
  • Toronto, 5 minutes ago
  • United States, 14 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1073 users visited in the last hour