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<prev • 287 results • page 1 of 10 • next >
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90
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Extract the overlap of well-covered regions across multiple samples
wgs coverage written 1 day ago by DVA • 450
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6
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42 follow
6
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How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 4.1 years ago by krithika.gu • 200 • updated 4 days ago by Fred0730 • 0
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1
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1
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Does samtools depth know how to handle paired-end reads
samtools coverage written 21 days ago by roy.granit • 700 • updated 21 days ago by ATpoint • 5.5k
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81
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Coverage variance and mean coverage
sequence coverage tool written 26 days ago by ash • 10 • updated 26 days ago by finswimmer ♦ 3.6k
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2
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109
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How many reads cover the exon per gene from a BAM? The gene (or exon) is totally covered by BAM file?
gene bam coverage written 4 weeks ago by Andrea Spinelli • 10 • updated 4 weeks ago by Devon Ryan ♦ 81k
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1
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136
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1
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Formula for extracting per base read depth/per base genome coverage from a SAM file?
bedtools alignment samtools sam coverage written 7 weeks ago by Diploid Progenitor • 10 • updated 7 weeks ago by Devon Ryan ♦ 81k
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147
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Subset BAM file based on selected coverage, PacBio reads
arrow pbalign coverage bam pacbio written 7 weeks ago by MyrNat • 0
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164
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Normalization amplicon data using mean depth and coverage
normalization amplicon coverage depth written 8 weeks ago by sovrappensiero • 10
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1
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206
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1
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Coverage in whole genome sequencing
wgs coverage written 8 weeks ago by Tania • 120 • updated 8 weeks ago by Sharon • 340
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232
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Is there any precedent for considering marked duplicates when calculating coverage in high-depth whole-exome sequencing?
exome duplicates exome-seq coverage written 9 weeks ago by Dan D ♦ 6.5k
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82
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Transcript coverage considering exons
assembly coverage rna-seq written 10 weeks ago by MarVi • 0
32
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3
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12k
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15 follow
3
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How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
bed chip-seq coverage statistics written 7.4 years ago by Stew • 1.4k • updated 11 weeks ago by Hmd • 10
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129
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metagenomic assembly coverage, for multiple samples
bowtie2 metagenomics samtools coverage mpileup written 11 weeks ago by willnotburn • 40
2
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1
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247
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1
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metagenomic assembly has low coverage; what are my options?
assembly trimming metagenomic coverage megahit written 3 months ago by willnotburn • 40 • updated 3 months ago by h.mon ♦ 16k
2
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2
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289
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7 follow
2
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Judging best assembly
assembly cut off kmer coverage velvet written 3 months ago by deepti1rao • 0 • updated 3 months ago by Rohit • 1.3k
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223
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0
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Genome Assembly at low coverage?
assembly coverage written 3 months ago by AP • 80
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260
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0
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How to calculate standard deviation of coverage for each scaffold in a pileup file?
perl coverage pileup sequencing written 3 months ago by PollardMD • 0
4
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2
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256
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2
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Tools to assess coverage and error rate at specific position
alignment error rate coverage sequencing written 4 months ago by prishly • 0 • updated 4 months ago by dariober ♦ 9.2k
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208
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0
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Coverage of methylation txt files
methylation coverage bismark written 4 months ago by Pin.Bioinf • 70
1
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1
answer
168
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1
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Mean coverage in Ion Torrent PGM
ion torrent ngs coverage written 5 months ago by Abdul Rafay Khan • 860 • updated 5 months ago by haro • 220
1
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1
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231
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1
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How does picard CollectWGSmetrics estimate coverage on Soft-Clipped Reads?
wgs coverage written 5 months ago by knagul • 10 • updated 5 months ago by Dan D ♦ 6.5k
2
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1
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228
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1
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Calculating gene/exon coverage
coverage written 5 months ago by Joshi • 0 • updated 5 months ago by Macspider • 2.4k
7
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1
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534
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1
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Tool: mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
exome wgs depth coverage tool written 5 months ago by brentp ♦ 22k • updated 5 months ago by ATpoint • 5.5k
5
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1
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822
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1
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Calculating the gene coverage in StringTie
gene stringtie coverage rna-seq written 12 months ago by sjbasu • 30 • updated 5 months ago by geo.pertea • 60
0
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2
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954
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2
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Bedtools coverage adding feature scores
bedtools score coverage written 2.1 years ago by jaime.alvarez.benayas • 10 • updated 5 months ago by Alex Reynolds ♦ 24k
1
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2
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459
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2
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Median coverage from BAM file
dna-seq coverage written 6 months ago by rmf • 280 • updated 6 months ago by Alex Reynolds ♦ 24k
1
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259
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Excluding reads for Coverage Calculation in given regions
bedtools bam coverage written 6 months ago by finswimmer ♦ 3.6k • updated 6 months ago by Pierre Lindenbaum ♦ 110k
2
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3
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564
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3
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Do I need to provide the Illumina's target region bed file for qualimap?
dnaseq depth wes coverage exome sequencing written 8 months ago by bioinforesearchquestions • 140 • updated 6 months ago by Raony Guimarães • 820
0
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1
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279
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1
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WES chromosome Y off-target reads coverage compare to autosome
alignment coverage sequencing written 6 months ago by hujingchu • 0 • updated 6 months ago by markus.riester • 260
12
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4
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3.6k
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9 follow
4
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bedtools coverage gives error received illegal bin number, but that number isn't in my data!
bedtools bin chip-seq coverage error written 17 months ago by tara.alpert • 30 • updated 6 months ago by brianpenghe • 0
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