Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: coverage • reset
or   Classic search
<prev • 249 results • page 1 of 9 • next >
1
vote
1
answer
210
views
1
answer
rna seq genome coverage
gatk picard coverage rna-seq written 14 days ago by ea1402 • 10 • updated 13 days ago by geek_y ♦ 7.8k
4
votes
1
answer
215
views
1
answer
how to calculate the coverage over a specif coordinate
exon coverage rna-seq written 15 days ago by Lila M • 330
0
votes
0
answers
171
views
0
answers
Assessing coverage in exome capture experiments
sequencing coverage targeted sequencing depth written 15 days ago by t_stranger • 20
1
vote
0
answers
163
views
0
answers
find snp depth and total depth
coverage snp written 20 days ago by paumarc • 0 • updated 20 days ago by genomax ♦ 32k
0
votes
0
answers
274
views
0
answers
panel specific general statistics
exome panel ngs statistic coverage written 28 days ago by vision017 • 10
0
votes
0
answers
122
views
0
answers
List of Exons per gene bad covered
python exon coverage written 4 weeks ago by ilopez.7 • 0
0
votes
0
answers
124
views
0
answers
Calculating the gene coverage in StringTie
gene stringtie coverage rna-seq written 5 weeks ago by sjbasu • 0
0
votes
0
answers
104
views
0
answers
Best coverage measurements specifically for genes
metagenomes coverage gene-catalog written 5 weeks ago by DR • 10
2
votes
1
answer
204
views
5 follow
1
answer
coverage of fastq file
genome next-gen alignment coverage sequencing written 5 weeks ago by jianzheng934963534 • 0 • updated 5 weeks ago by Istvan Albert ♦♦ 73k
2
votes
2
answers
3.3k
views
2
answers
How To Filter Vcf By Coverage?
vcf coverage written 3.4 years ago by newDNASeqer • 560 • updated 5 weeks ago by aadeokar • 0
0
votes
0
answers
109
views
0
answers
Calculate scaffold coverage without ambiguous (N) bases
genome coverage written 6 weeks ago by ThomasL70 • 0
0
votes
2
answers
207
views
2
answers
CNV tool for small sequences
tool cnv coverage written 7 weeks ago by jsgounot • 130 • updated 7 weeks ago by bdelolmo • 10
3
votes
1
answer
132
views
1
answer
User-defined coverage in CollectHsMetrics [Picard]
next-gen broadinstitute picard coverage written 7 weeks ago by anupriyaverma1408 • 100 • updated 7 weeks ago by Pierre Lindenbaum ♦ 96k
3
votes
1
answer
225
views
1
answer
Coverage analysis of NGS data by Depth
ngs panels coverage depth written 7 weeks ago by nilakshafreezon • 100 • updated 7 weeks ago by guillaume.rbt • 300
50
votes
5
answers
21k
views
32 follow
5
answers
How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 3.2 years ago by krithika.gu • 150 • updated 8 weeks ago by bioinfo8 • 80
189
votes
11
answers
104k
views
89 follow
11
answers
Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 6.6 years ago by Biomed ♦ 4.2k • updated 8 weeks ago by bioinfo8 • 80
2
votes
1
answer
165
views
1
answer
Random downsampling without replacement in bam files only in regions with coverage>x
reads bam coverage written 9 weeks ago by victorv888 • 0
3
votes
2
answers
2.1k
views
5 follow
2
answers
Calculating Mapping Coverage
calculate mapping coverage tool written 3.2 years ago by Hatem Elshazly • 50 • updated 10 weeks ago by Brian Bushnell ♦ 13k
0
votes
0
answers
124
views
0
answers
how to analyze the distribution over each gene in different conditions?
gene coverage rna-seq written 11 weeks ago by Lila M • 330
1
vote
1
answer
203
views
1
answer
how to calculate coverage in bam file over a specific bed file
bedtools multicov coverage exon rna-seq written 11 weeks ago by Lila M • 330 • updated 11 weeks ago by Devon Ryan ♦ 70k
0
votes
0
answers
105
views
0
answers
Qualimap abnormally high coverage standaed deviation
bamqc coverage standard deviation written 11 weeks ago by chevivien • 60
0
votes
2
answers
145
views
2
answers
Tool for BAM coverage without the soft clipping base
softclipping bam coverage written 12 weeks ago by nayshool • 20 • updated 12 weeks ago by Pierre Lindenbaum ♦ 96k
2
votes
1
answer
158
views
1
answer
coverage for unique transcript and df process
R coverage data frame written 3 months ago by Lila M • 330 • updated 3 months ago by Rashedul Islam • 160
5
votes
2
answers
288
views
2
answers
read depth of a feature (e.g gene or exon)
coverage rna-seq tool written 3 months ago by xd_d • 60
0
votes
1
answer
183
views
1
answer
Depth of coverage in Bam file does not match depth in VCF file
indel variant calling pindel coverage igv written 3 months ago by jsneaththompson • 0 • updated 3 months ago by tangming2005 • 2.1k
7
votes
0
answers
349
views
6 follow
0
answers
What is the definition of "read depth" vs "coverage"? (again...)
read depth coverage depth written 3 months ago by ariel.balter • 110
22
votes
1
answer
253
views
10 follow
1
answer
Calculating Coverage Using CIGAR String
samtools coverage bamtools written 3 months ago by QVINTVS_FABIVS_MAXIMVS • 1.9k
6
votes
1
answer
1.0k
views
5 follow
1
answer
bedtools coverage gives error received illegal bin number, but that number isn't in my data!
bedtools bin chip-seq coverage error written 6 months ago by tara.alpert • 0 • updated 3 months ago by soloway • 0
0
votes
0
answers
136
views
0
answers
actual coverage vs. macs2
macs2 coverage coveragebed written 3 months ago by blur • 50
1
vote
1
answer
217
views
1
answer
How to extract high coverage region from BAM?
reads ngs bam coverage mapping written 4 months ago by BioGeek • 80 • updated 4 months ago by Pierre Lindenbaum ♦ 96k
<prev • 249 results • page 1 of 9 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, just now
  • European Union, just now
  • EMBL-EBI, 2 minutes ago
  • HZAU, China, 3 minutes ago
  • France, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1273 users visited in the last hour