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<prev • 312 results • page 1 of 11 • next >
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MutSig coverage table
wig mutsig coverage written 4.5 years ago by sadiq.saleem.09 • 0 • updated 7 days ago by April • 0
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Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 4.1 years ago by Matt Corley • 40 • updated 23 days ago by Biostar ♦♦ 20
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Depth of coverage of Bed file regions?
bedtools bed coverage genome written 4 weeks ago by Jon17 • 10 • updated 4 weeks ago by h.mon ♦ 24k
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what is the best way to calculate significant differences in tss profiles?
differences coverage tss written 4 weeks ago by Lila M • 470 • updated 4 weeks ago by ATpoint ♦ 15k
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1
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1
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Extract coverage from each nucleotide position of a genome in a bam file
bed bam coverage written 5 weeks ago by MAPK • 1.4k
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128
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TDF Coverage in Figure
igv rna-seq coverage tdf m6a written 6 weeks ago by Charles Warden ♦ 6.5k
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118
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CollectHsMetrics base coverage output has overlapping targets
picard coverage written 7 weeks ago by blazer9131 • 10 • updated 7 weeks ago by wyattsevans • 0
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6 follow
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Median coverage from BAM file
dna-seq coverage written 15 months ago by rmf • 560
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124
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How to calculate read depth for a specific gene list?
readdepth interesct coverage written 9 weeks ago by Lila M • 470
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110
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how to plot a TSS profile using an external quantification for Watson and Crick strand
ggplot ratio coverage tss written 10 weeks ago by Lila M • 470
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1
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138
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1
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Efficent Estimation of Sequencing Coverage
samtools coverage written 10 weeks ago by dario.garvan • 440 • updated 10 weeks ago by harold.smith.tarheel • 4.3k
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1
answer
222
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1
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error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 12 weeks ago by Lila M • 470 • updated 11 weeks ago by Devon Ryan ♦ 89k
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13 follow
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bedtools coverage gives error received illegal bin number, but that number isn't in my data!
bedtools bin chip-seq coverage error written 2.2 years ago by tara.alpert • 30 • updated 12 weeks ago by pangxy3 • 0
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218
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What coverage is recommended for amplicon sequencing?
amplicon coverage written 3 months ago by Picasa • 390
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1
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185
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1
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How to conclude in a significant decrease of coverage depth
genome alignment next-gen samtools coverage written 3 months ago by maxime.policarpo • 50 • updated 3 months ago by Ahill • 1.5k
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1
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185
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1
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Lower Assembly Quality Despite Higher Coverage?
genome assembly next-gen coverage alignment written 3 months ago by GTR • 0 • updated 3 months ago by h.mon ♦ 24k
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2
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205
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What would be the expected average coverage of a 384 multiplexed run on a Novaseq S4 flowcell?
novaseq coverage written 4 months ago by Biomed ♦ 4.5k • updated 4 months ago by ATpoint ♦ 15k
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1
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Giga base or Giga byte
gb assembly coverage written 8 months ago by Shawrob400 • 10 • updated 4 months ago by ATpoint ♦ 15k
5
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1
answer
229
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1
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Finding out which genes are covered the most
genes coverage written 4 months ago by shubhra.bhattacharya • 120 • updated 4 months ago by Pierre Lindenbaum ♦ 119k
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194
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Is is possible to find "SureSelectXT Human Methyl-Seq Capture Library" somewhere?
methyl-seq capture library ssmethylseq coverage written 5 months ago by daisy.ko • 20 • updated 5 months ago by Biostar ♦♦ 20
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How do I access genome coverage using SPADES?
genome spades coverage myposts written 3.7 years ago by fhsantanna • 440 • updated 5 months ago by DanielC • 80
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2
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343
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find coverage of specific exomes from a bam file
bedtools genomecov bam coverage bed written 5 months ago by lait • 130 • updated 5 months ago by Pierre Lindenbaum ♦ 119k
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177
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how can I get the coverage over introns only in a RNA-seq experiment?
introns coverage rna-seq written 5 months ago by Lila M • 470
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1
answer
607
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5 follow
1
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Is there any precedent for considering marked duplicates when calculating coverage in high-depth whole-exome sequencing?
exome duplicates exome-seq coverage written 11 months ago by Dan D ♦ 6.7k • updated 5 months ago by marco_ul • 0
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340
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coverage of a SNP site?
bedtools ngs ase coverage snp written 5 months ago by Susmita Mandal • 30 • updated 5 months ago by Kevin Blighe ♦ 41k
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5
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10 follow
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What Is The Fastest Method To Determine The Number Of Positions In A Bam File With >N Coverage?
bedtools depth-of-coverage bam samtools coverage written 5.9 years ago by Malachi Griffith ♦ 17k • updated 5 months ago by Paul • 1.3k
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Rtracklayer: Converting rlelist (Coverage) to bigwig
rtracklayer bigwig coverage written 2.5 years ago by datascientist28 • 370 • updated 5 months ago by Biostar ♦♦ 20
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1
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214
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1
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What sequence has being read by IGV's 'copy sequence'
igv alignment samtools coverage read map written 5 months ago by marongiu.luigi • 380 • updated 5 months ago by h.mon ♦ 24k
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209
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1
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Is BED file generated by bametobed sorted ?
bedtools ngs bamtobed coverage sequencing written 6 months ago by pacman • 50 • updated 6 months ago by Alex Reynolds ♦ 28k
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Mapping Reads Back To Assembly Contigs To Generate Pileup
pileup bwa coverage written 7.0 years ago by Sen • 0 • updated 7 months ago by Biostar ♦♦ 20
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