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Extract bed regions from CRAM files
bam cram written 9 weeks ago by MAPK1.7k
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140
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CRAM to amino acid based VCF
vcf gatk cram written 4 months ago by Shicheng Guo8.5k
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cram file to fastq conversion
fastq cram conversion written 4 months ago by eric.londin30 • updated 4 months ago by lieven.sterck8.9k
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5 follow
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How to remove reads with only Ns from bam/sam/cram file?
samtools bam cram sam remove reads written 5 months ago by erik.stricker0 • updated 5 months ago by Anand Rao330
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8 follow
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Issue With CRAM -> BAM -> FASTQ Conversion
samtools fastq bam cram view written 16 months ago by denis.k20 • updated 16 months ago by jkbonfield430
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CRAM reference registry and the GRch38 reference genome
cram bam samtools variantcalling grch38 written 23 months ago by Mehulsharma.25310 • updated 23 months ago by h.mon31k
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samtools fastq compression
samtools fastq cram written 2.1 years ago by bsmith030465150
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How to convert fastq to cram, and from cram back to fastq
fastq cram written 2.2 years ago by Niek De Klein2.5k • updated 2.2 years ago by finswimmer14k
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cram.cip format ???
cram alignment file_format sequencing written 2.3 years ago by 2nelly220
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Specify reference to samtools index
samtools cram written 2.9 years ago by mkher50
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6 follow
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BAM to CRAM to BAM
bam cram written 3.4 years ago by ElUretsky20 • updated 3.4 years ago by James Bonfield150
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5 follow
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Is samtools' compression of bam to cram lossless?
samtools cram written 3.6 years ago by bjarki.sigurjons10 • updated 3.6 years ago by James Bonfield150
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CRAM conversion to .BAM or FastQ not working
bam cram written 4.1 years ago by always_learning1.1k • updated 4.1 years ago by Devon Ryan97k
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cramtools Java NoClassDefFoundError
cram cramtools written 4.5 years ago by ttom210
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small CRAM file to test
cram cramtools written 4.6 years ago by lien90
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Reading CRAM files in pysam
python htslib samtools pysam cram written 4.9 years ago by QVINTVS_FABIVS_MAXIMVS2.4k • updated 4.9 years ago by duxan50
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tools using CRAM format?
cram written 5.2 years ago by Richard570 • updated 5.2 years ago by Pierre Lindenbaum131k
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cramtools without internet access
cram bam cramtools written 5.5 years ago by evansjo10 • updated 5.5 years ago by Pierre Lindenbaum131k
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41 follow
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Why are we still using Bam files? And not Cram, HDF5 or improved Bam files?
bam cram io hdf written 6.4 years ago by WilliamS320 • updated 6.2 years ago by Pavel Senin1.9k
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