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Meaning of timing variables in "executionEvents" of workflows in cromwell metadata

wdl workflowmetadata cwl cromwell written 11 weeks ago by douwevanderleest • 10

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132

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How to set AWS_BATCH_JOB_ATTEMPT value when using curl to submit cromwell jobs to batch?

aws-batch workflow wdl cromwell written 4 months ago by alexandriapinto1 • 0

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155

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How do you get input files to a cromwell server

workflow cromwell widdle wdl written 4 months ago by Irsan • 7.2k • updated 4 months ago by vdauwera • 960

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618

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How to run R docker in WDL?

wdl R cromwell docker gatk written 17 months ago by c.clarido • 60

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1.4k

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Bash vs WDL for running GATK

gatk cromwell pipeline linux wdl written 22 months ago by Mehulsharma.253 • 10 • updated 21 months ago by vdauwera • 960

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Recent Replies

C: De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2) by genomax ♦ 90k
When I searched with `cnidarian polychaete` all google hits seem to indicate that these two organ...
C: How to plot Raster plot by Dunois • 50
[Here's][1] a solution for MATLAB: The concept of a raster plot is in of itself quite general, ...
A: Creating Interactive Volcano Plots with R and Plot.ly by jg43486 • 0
p <- plot_ly(data = diff_df, x = diff_df$Fold, y = -log10(diff_df$FDR), text = diff_df$externa...
C: De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2) by Dunois • 50
"Polychaete-hosting cnidarians"? No, it's just a polychaete (where did you even get that phrase f...
C: How to plot Raster plot by Alex Reynolds ♦ 30k
https://ggplot2.tidyverse.org/reference/geom_tile.html
C: Help interpreting BLAST results? (Max score/Percent. Identity/E-values) by Mensur Dlakic • 6.6k
The interpretation of percent identity is empirical - there are no prescribed values beyond very ...
C: De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2) by genomax ♦ 90k
> polychaete-hosting cnidarians Does it mean there are two genomes in there or just one? Look...
C: Color code samples by jared.andrews07 ♦ 7.2k
In particular, the `group.by` parameter.
A: Is it possible to supplement a gbk file with manual annotations? by Mensur Dlakic • 6.6k
If you prefer to do this using GUI, I will suggest an old program called [**GENtle**][1]. That wo...
C: Error in reading expression matrix by RamRS ♦ 30k
If an answer was helpful, you should upvote it; if the answer resolved your question, you should ...
C: Extracting rows on basis of specific column values in R by RamRS ♦ 30k
If an answer was helpful, you should upvote it; if the answer resolved your question, you should ...
C: How to plot Raster plot by RamRS ♦ 30k
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