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Recent Replies
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C: STAR mapped more reads to transcriptome by
Chris Fields • 1.7k
It's hard to say w/o knowing specifically how you ran STAR. Maybe a difference in the total # of...
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C: FASTQ- Reverse reads of paired end sequence worse than forward reads by
genomax ♦ 29k
Sadly the original data submitters appear to have modified the default Illumina fastq headers, so...
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A: cutadapt error while performing Trim_Galore by
dariober • 7.8k
>FASTQ file is expected to start with '@', but found '\n' If this is true It seems you have a...
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C: FASTQ- Reverse reads of paired end sequence worse than forward reads by
dilawerkh4 • 0
This is what I get using the -F option: @1 GCCGCGCCGGTGATGGT +1 ]]]]]]]]]]]]]]]]] @2 AGTCGG...
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A: FeatureCount for miRNA count by
k.kathirvel93 • 30
Command : featureCounts -t miRNA -g name -a hsa.gff -o counts.txt mapping_results.bam Result : c...
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C: Run Samtools on multiple files by
Pierre Lindenbaum ♦ 95k
> does that "16" means the no. of threads? yes
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C: FeatureCount for miRNA count by
WouterDeCoster ♦ 19k
> so i have tried featureCounts with various parameters but i couldn't. And it would be VERY ...
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C: MACS2 produces different results using BAMPE and BEDPE by
mcjmigdal • 0
Hi, did you ever got to the bottom of this problem? Kinda fighting same thing here. I did find t...
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C: why spectral clustering show a warning? by
Jean-Karim Heriche ♦ 11k
> what's wrong As the message says, your graph is not fully connected or said another way,...
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C: featureCounts/HTSeq-count problem with different annotation files by
genomax ♦ 29k
> I tried a lot but i couldn't You need to specify what exactly you tried to get meaningful h...
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A: featureCounts/HTSeq-count problem with different annotation files by
k.kathirvel93 • 30
Can anyone help me ? I want to count my miRNA by using featureCounts. i have a .bam filee after ...
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C: spliting sdf file by
genomax ♦ 29k
Check [this toolkit out][1]. Otherwise use the suggestion [in this thread][2] to convert to PDB f...
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