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How to trim reads when I'm not sure where they are?
illumina rna-seq cutadapt written 7 weeks ago by avelarbio4610 • updated 7 weeks ago by shelkmike380
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How to apply CUTADAPT on multiple fastq files using linux?
R cutadapt conda rna-seq linux written 8 weeks ago by MatStat140 • updated 8 weeks ago by Pierre Lindenbaum134k
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Help with parallelization and loop cutadapt
loop bash cutadapt written 10 weeks ago by russell.stewart.j10 • updated 10 weeks ago by Dave Carlson520
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249
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Warnings in the Hisat2 alignment output files
hisat2 alignment rna-seq cutadapt written 5 months ago by newbie90 • updated 5 months ago by swbarnes29.6k
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243
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How to put CutAdapt in path for running TrimGalore?
fastqc trimgalore cutadapt written 7 months ago by james.galske0 • updated 7 months ago by Shalu Jhanwar490
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4
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246
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Removing UniVec sequences in Assembly
assembly tsa bbduk rna-seq cutadapt written 8 months ago by jfo40 • updated 8 months ago by GenoMax96k
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Cutadapt for paired end RRBS data
trimming rrbs cutadapt written 2.7 years ago by anikb30 • updated 9 months ago by Biostar ♦♦ 20
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5 follow
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Cutadapt for loop issue
cutadapt unix forloop scripting written 10 months ago by geneart$$40 • updated 10 months ago by geek_y11k
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6 follow
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7
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removing overrepresented sequences from rna-seq
trimmomatic overrepresented sequences cutadapt written 12 months ago by anna10 • updated 12 months ago by h.mon32k
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356
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paired end reads cutadapt
overrepresented sequences cutadapt written 12 months ago by anna10 • updated 12 months ago by Kevin Blighe71k
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543
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ATAC-Seq kmer removal
kmers fastqc atac-seq trim cutadapt written 12 months ago by elenichri10 • updated 12 months ago by h.mon32k
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662
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Example NGS data
illumina fastq next-gen cutadapt written 14 months ago by ksgajula0 • updated 14 months ago by devarora320
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cutadapt summary statistics after every run
adapter trimming rna-seq cutadapt written 14 months ago by bnayer260 • updated 14 months ago by ATpoint46k
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miRNA fastqc sequence length distribution with UMI
qiagene trimming fastqc mirna cutadapt written 17 months ago by maria2019130 • updated 17 months ago by swbarnes29.6k
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563
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Find illumina adaptors
rnaseq ilumina trimming cutadapt written 21 months ago by sabaghianamir7020 • updated 21 months ago by chen2.1k
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Demultiplexing before merging paired-end reads?
pandaseq sabre cutadapt written 2.3 years ago by asidhu10 • updated 22 months ago by Biostar ♦♦ 20
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