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<prev • 205 results • page 1 of 7 • next >
6
votes
2
answers
95
views
2
answers
Is there a schema for CWL inputs/job files?
cwl written 14 days ago by karl.sebby • 70 • updated 5 days ago by peter.amstutz • 300
0
votes
2
answers
60
views
2
answers
Rename file in CWL ExpressionTool?
file management cwl written 8 days ago by alanh • 50 • updated 5 days ago by Michael R. Crusoe • 1.5k
4
votes
1
answer
128
views
1
answer
CWL :Append the ref input used in toolkit
cwl written 10 days ago by lizhichao • 10 • updated 5 days ago by Michael R. Crusoe • 1.5k
5
votes
1
answer
102
views
1
answer
Perform one basecommand fot multiple files and get output for each file in CWL
cwl workflow pipeline written 7 days ago by mariafirulevabio • 20 • updated 6 days ago by Tom • 290
3
votes
1
answer
120
views
1
answer
CWL docker command user
cwl-runner cwl docker written 16 days ago by dganiewich • 60 • updated 10 days ago by Tom • 290
0
votes
0
answers
119
views
0
answers
bedtools sort -faidx in CWL
bedtools cwl sort written 13 days ago by dami • 0
5
votes
0
answers
127
views
0
answers
interesting behavior with grep
cwl written 28 days ago by ionox0 • 370
1
vote
1
answer
102
views
1
answer
CWL limit number of job instances created through scatter
queue scatter cwl resource management written 4 weeks ago by silverspanch • 10 • updated 29 days ago by Michael R. Crusoe • 1.5k
2
votes
1
answer
1.3k
views
1
answer
CWL: SLurm Job Sheduler
slurm cwl written 2.0 years ago by kevin.o.oluoch • 70 • updated 29 days ago by Biostar ♦♦ 20
7
votes
2
answers
229
views
2
answers
Combine subject with sample type in a scatter?
cwl written 6 weeks ago by alanh • 50
2
votes
1
answer
127
views
1
answer
CWL join two dimensional file array output
workflow cwl scatter written 5 weeks ago by silverspanch • 10 • updated 5 weeks ago by Tom • 290
1
vote
1
answer
111
views
1
answer
How to stop removing last slash of directory parameter in cwl?
cwltool cwl written 5 weeks ago by sshinya • 10
0
votes
0
answers
129
views
0
answers
Can I use output eval with CWL to create the list of output files (i.e. replace the glob results)?
common workflow language cwl written 6 weeks ago by mavrommatis.konstantinos • 0
3
votes
1
answer
157
views
1
answer
CWLtools version problem with usage of secondary files and java expression
cwl written 6 weeks ago by a.james • 200
0
votes
1
answer
113
views
1
answer
[cwl workflow steps] explicit I/O relationship, workflow
cwl written 9 weeks ago by billy0210828 • 0 • updated 6 weeks ago by kaushik.ghose • 50
2
votes
1
answer
193
views
1
answer
cwl kubernetes support?
cwl written 6 weeks ago by xiao2 • 0 • updated 6 weeks ago by kaushik.ghose • 50
0
votes
0
answers
215
views
0
answers
Job: Python Software Engineer with Experience with Workflow Management, Whitefish, MT
python cwl job wdl written 8 weeks ago by karl.sebby • 70
7
votes
1
answer
209
views
1
answer
Output going to stdout?
cwl written 9 weeks ago by ForrestBear • 30 • updated 8 weeks ago by Michael R. Crusoe • 1.5k
1
vote
0
answers
153
views
0
answers
Difference between TMPDIR environment variable, --workdir in Toil / CWL
toil cwl written 11 weeks ago by ionox0 • 370
2
votes
1
answer
393
views
1
answer
CWL to check the output directory and run for non-existing files
next-gen cwl rna-seq written 7 months ago by a.james • 200
13
votes
1
answer
249
views
1
answer
Markduplicates did not find output file with glob pattern
cwl written 12 weeks ago by yifan wang • 10 • updated 11 weeks ago by Michael R. Crusoe • 1.5k
1
vote
1
answer
158
views
1
answer
ExpressionTool failing after a scatter: How do I debug the Javascript?
workflow cwl javascript expressiontool written 12 weeks ago by alanh • 50
0
votes
0
answers
178
views
0
answers
CWL in toil
toil cwl written 12 weeks ago by a.james • 200
2
votes
1
answer
247
views
1
answer
cwltool --print-dot generate same format as cwl viewer
cwl cwlviewer written 3 months ago by tony • 0 • updated 3 months ago by Michael R. Crusoe • 1.5k
0
votes
1
answer
141
views
1
answer
CWL: Organise outputs in subdirectories
subdir cwl written 3 months ago by mareq • 0 • updated 3 months ago by Tom • 290
2
votes
1
answer
211
views
1
answer
CWL: nameext not returning expected array
cwl expressiontool written 3 months ago by ForrestBear • 30 • updated 3 months ago by Tom • 290
3
votes
1
answer
232
views
1
answer
CWL BWA-MEM RG fields from string parameters - use several input strings to generate a single input string
bwa-mem cwl written 3 months ago by dganiewich • 60 • updated 3 months ago by Tom • 290
2
votes
1
answer
185
views
1
answer
CWL for star for multiple bam files with javascript expression
cwl written 4 months ago by a.james • 200 • updated 3 months ago by Pierre Lindenbaum ♦ 120k
2
votes
1
answer
243
views
1
answer
CWL LoadListing - cwltool can't handle large number of input files
cwl written 4 months ago by Tom • 290
5
votes
1
answer
242
views
1
answer
Why is ShellCommandRequirement necessary for Pipes
cwl written 4 months ago by ionox0 • 370
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