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<prev • 237 results • page 1 of 8 • next >
2
votes
1
answer
175
views
1
answer
Parallelize CWL workflow over multiple instances on AWS
toil cwl written 12 weeks ago by uray10 • 10 • updated 5 weeks ago by asha.rostamianfar • 10
2
votes
0
answers
127
views
0
answers
cwl: pass array of elements with repeated input flags
array gatk cwl written 6 weeks ago by cocchi.e89 • 90
1
vote
0
answers
400
views
0
answers
Job: Software Developer: Bioinformatics Content Lead
python cwl job wdl written 3 months ago by karl.sebby • 100
0
votes
0
answers
114
views
0
answers
Meaning of timing variables in "executionEvents" of workflows in cromwell metadata
wdl workflowmetadata cwl cromwell written 11 weeks ago by douwevanderleest • 10
1
vote
1
answer
144
views
1
answer
CWL: Min and max for tool input values (float,int)
cwl written 6 months ago by fjrmoreews • 0 • updated 4 months ago by Michael R. Crusoe • 1.8k
7
votes
2
answers
622
views
2
answers
Parse CWL to graph data structure or database?
neo4j cwl written 15 months ago by mcpherson • 40 • updated 5 months ago by ngsbioinformatics • 30
3
votes
3
answers
2.3k
views
3
answers
CWL: default values for custom types in a workflow
cwl written 3.3 years ago by thomas.e • 110 • updated 6 months ago by Biostar ♦♦ 20
6
votes
0
answers
333
views
0
answers
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
thanks news cwl written 11 months ago by Michael R. Crusoe • 1.8k • updated 6 months ago by ATpoint ♦ 39k
0
votes
0
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174
views
0
answers
CWL - glob an array of output files based on a single input string
cwl written 6 months ago by drkennetz • 500
17
votes
2
answers
1.2k
views
5 follow
2
answers
CommandLineTool doesn't finish
cwl written 2.3 years ago by Tom • 530
5
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0
answers
695
views
0
answers
Tutorial: How to run CWL with Nextflow
tutorial cwl nextflow written 7 months ago by steve • 2.6k
2
votes
2
answers
542
views
2
answers
Can I use output eval with CWL to create the list of output files (i.e. replace the glob results)?
common workflow language cwl written 17 months ago by mavrommatis.konstantinos • 10 • updated 7 months ago by michael.franklin • 10
1
vote
1
answer
1.1k
views
1
answer
make paths variable in .cwl workflows and corresponding -job files
common workflow language cwl written 4.0 years ago by c.ravarani • 0 • updated 10 months ago by Biostar ♦♦ 20
1
vote
1
answer
443
views
1
answer
ask for a CWL script to perform FASTQC to get quality control files, then use the folder of having these quality control files as input for MultiQC
cwl written 11 months ago by aimin.at.work • 0 • updated 11 months ago by Phil Ewels • 600
2
votes
1
answer
543
views
1
answer
bedtools sort -faidx in CWL
bedtools cwl sort written 16 months ago by dami • 10 • updated 11 months ago by kaushik.ghose • 70
4
votes
2
answers
673
views
2
answers
CWL NO JSON object could be decoded
json cwl written 19 months ago by yifan wang • 20 • updated 11 months ago by Biostar ♦♦ 20
6
votes
2
answers
548
views
2
answers
CWL: Using the "EnvVarRequirement" to pass an environment variable to a script
common workflow language cwl written 11 months ago by skanwal • 50
2
votes
1
answer
370
views
1
answer
CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
workflow cwl written 12 months ago by Linda • 0 • updated 11 months ago by Michael R. Crusoe • 1.8k
5
votes
1
answer
374
views
1
answer
secondaryFiles where nameroot differs
cwl written 12 months ago by Peter vH • 130 • updated 12 months ago by Michael R. Crusoe • 1.8k
4
votes
1
answer
329
views
1
answer
Missing CWL files in a Directory when passed as input
cwl written 13 months ago by asha • 20 • updated 12 months ago by Tom • 530
2
votes
0
answers
487
views
0
answers
Job: Seeking bioinformaticians and data engineers for product research study
aws cwl workflows rna-seq job written 13 months ago by duminda.aluthgamage • 30
2
votes
1
answer
744
views
1
answer
cwl: unrecognized extension field, $schemas section
cwl written 2.7 years ago by ninsch3000 • 10 • updated 13 months ago by Biostar ♦♦ 20
13
votes
1
answer
434
views
5 follow
1
answer
Input specific output filenames
cwl rna-seq written 13 months ago by nmaki • 30 • updated 13 months ago by Tom • 530
4
votes
2
answers
414
views
2
answers
how do I default to /dev/null in CommandLineTool
cwl written 13 months ago by Azat Badretdin • 0 • updated 13 months ago by Michael R. Crusoe • 1.8k
9
votes
3
answers
1.2k
views
5 follow
3
answers
Is there a schema for CWL inputs/job files?
cwl written 16 months ago by karl.sebby • 100
3
votes
0
answers
261
views
0
answers
common workflow language
cwl written 13 months ago by kalwad.piyusha7 • 10
3
votes
1
answer
377
views
1
answer
Change execution directory before running a tool (CWL)
cwl written 13 months ago by andreas.bleuler • 20 • updated 13 months ago by Tom • 530
2
votes
1
answer
929
views
1
answer
Save CURL output to file
cwl written 13 months ago by amnoyman • 0 • updated 13 months ago by inutano • 30
3
votes
2
answers
359
views
2
answers
More examples of parser_v1.0.py usage?
python cwl parser written 14 months ago by mcpherson • 40
9
votes
2
answers
638
views
2
answers
Add an item from input to an output array in CWL
cwl written 14 months ago by drkennetz • 500 • updated 14 months ago by Michael R. Crusoe • 1.8k
<prev • 237 results • page 1 of 8 • next >
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