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16
votes
1
answer
168
views
6 follow
1
answer
Workflows! Where is the code?
cwl workflows wdl written 2 days ago by syntax • 20 • updated 2 days ago by Jeremy Leipzig ♦ 17k
0
votes
1
answer
46
views
1
answer
CWL: Is there a way to output an output file with one of the inputs of the tool in a Record type?
cwl written 10 days ago by ionox0 • 80 • updated 5 days ago by bogdan.gavrilovic • 90
0
votes
1
answer
196
views
1
answer
Conflicting errors with "baseCommand" vs "arguments" usage
cwl written 9 weeks ago by ionox0 • 80
0
votes
0
answers
47
views
0
answers
CWL: Is there a way to have a list of imported Record types as an input?
cwl written 9 days ago by ionox0 • 80
3
votes
1
answer
126
views
1
answer
CWL: Is there a way to only pass certain fields from a `record` type to a step?
cwl written 9 weeks ago by ionox0 • 80 • updated 4 weeks ago by Michael R. Crusoe • 820
3
votes
0
answers
162
views
0
answers
Is there a good way to test CWL tools and workflows?
cwl written 6 weeks ago by Carlos Borroto • 1.7k • updated 5 weeks ago by Biostar ♦♦ 20
2
votes
2
answers
365
views
2
answers
What is the recommended way to debug JavaScript in CWL?
cwl written 9 weeks ago by ionox0 • 80 • updated 5 weeks ago by bogdan.gavrilovic • 90
4
votes
2
answers
196
views
2
answers
CWL: Can we create a workflow model without the need for execution of the scripts?
cwl written 12 weeks ago by pratikshrivastava23 • 10 • updated 5 weeks ago by bogdan.gavrilovic • 90
3
votes
1
answer
189
views
1
answer
Is there a way to repeat a prefix for an input that is an array of strings?
cwl written 9 weeks ago by ionox0 • 80 • updated 5 weeks ago by bogdan.gavrilovic • 90
2
votes
1
answer
104
views
1
answer
CWL multidimensional arrays or arrays of tuples
cwl written 7 weeks ago by mkher • 30 • updated 5 weeks ago by bogdan.gavrilovic • 90
3
votes
1
answer
153
views
1
answer
Use filename found in an input Directory in a CommandLineTool
cwl written 6 weeks ago by alanh • 10 • updated 5 weeks ago by bogdan.gavrilovic • 90
3
votes
1
answer
149
views
1
answer
More concise way to pass many parameters through to subworkflows
cwl written 7 weeks ago by ionox0 • 80 • updated 5 weeks ago by kaushik.ghose • 30
0
votes
1
answer
65
views
1
answer
Gather sorting by parameter in the metadata of input file
cwl gather written 5 weeks ago by grange • 0 • updated 5 weeks ago by Michael R. Crusoe • 820
0
votes
0
answers
93
views
0
answers
CWL DockerRequirements and -volume destination
cwl written 6 weeks ago by ngoc.nguyen • 0
2
votes
1
answer
225
views
1
answer
Taking directory path for reading as well as writing files
toil cwl cwltoil written 3 months ago by ionox0 • 80
0
votes
1
answer
206
views
1
answer
CWL: build docker image with DockerRequirements: dockerFile?
cwl docker written 3 months ago by ninsch3000 • 10 • updated 6 weeks ago by sshinya • 0
0
votes
0
answers
85
views
0
answers
scatter method between two steps CWL
scatter cwl written 6 weeks ago by djarecka • 0
2
votes
1
answer
202
views
1
answer
CWL: array of files as an input
cwl written 9 weeks ago by djarecka • 0 • updated 7 weeks ago by ionox0 • 80
1
vote
1
answer
323
views
1
answer
CWL: Arguments vs Inputs in CommandLineTool.
common workflow language cwl written 6 months ago by mkher • 30 • updated 11 weeks ago by farahk • 10
0
votes
2
answers
154
views
2
answers
CWL: Specify type of input file
cwl written 3 months ago by sc35 • 0 • updated 12 weeks ago by bogdan.gavrilovic • 90
1
vote
1
answer
161
views
1
answer
cwl: unrecognized extension field, $schemas section
cwl written 3 months ago by ninsch3000 • 10 • updated 3 months ago by Michael R. Crusoe • 820
1
vote
1
answer
275
views
1
answer
Write a file with CWL
cwl written 3 months ago by hoseintoossi • 40
2
votes
1
answer
328
views
1
answer
Output files in the input directory
cwl written 5 months ago by thomas.e • 90 • updated 5 months ago by Michael R. Crusoe • 820
0
votes
1
answer
356
views
1
answer
CWL: Gathering outputs in folders.
cwl written 5 months ago by lon.lightly • 0 • updated 5 months ago by Michael R. Crusoe • 820
4
votes
1
answer
290
views
1
answer
CWL: Make Enum optional (CommandInputEnumSchema)
cwl written 5 months ago by eduardo • 10 • updated 5 months ago by Michael R. Crusoe • 820
0
votes
1
answer
308
views
1
answer
CWL 'glob' field not capturing files
cwl written 6 months ago by eduardo • 10 • updated 6 months ago by Michael R. Crusoe • 820
2
votes
2
answers
220
views
2
answers
Filter array of files to one file
cwl written 6 months ago by eduardo • 10
1
vote
1
answer
364
views
1
answer
CWL: Input restrictions for integers
common workflow language cwl written 11 months ago by schujo • 10 • updated 6 months ago by j.pfeuffer • 10
4
votes
3
answers
401
views
3
answers
Converting stdout (File) to string
cwl written 6 months ago by eduardo • 10 • updated 6 months ago by Michael R. Crusoe • 820
7
votes
2
answers
588
views
2
answers
CWL: Allowed values for parameters
cwl written 12 months ago by unique_g • 80 • updated 6 months ago by Michael R. Crusoe • 820
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