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Answer: What does that dip in the density plot mean from a single cell data analysis?

Comment: What does that dip in the density plot mean from a single cell data analysis?

Answer: What does that dip in the density plot mean from a single cell data analysis?

Answer: Which method is the best for using in "dba.count" in Diffbind R package

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Popular Question to tomastokar ▴ 40

Scholar to karl.stamm 4.0k

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Recent Replies

Comment: What does betaPrior do in DESEQ? by i.sudbery 12k

Those DE genes - is that after a log fold change cut off?

Comment: How to filter VEP results of "missing values" by Yiming • 0

Thank you so much! I found an error with my code. And this works: filter_vep -i VEP_annotated.vcf -o VEP_filtered.vcf --format vcf --fo…

Comment: use a list of id to extract sequence from different genomics by GenoMax 104k

Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. <br /> <img src="…

Comment: gnomaAD exome and genome AF differences by humzakhan340 • 0

The point that genomes are much larger and more computationally intensive to work with is well-taken. However, promoter information is not…

Comment: ERROR [mem_sam_pe] paired reads have different names -- during binning in metaW by swbarnes2 10k

Do you understand what the problem is? Have you figured out which step introduced it?

Comment: gene expression of specifics gene by Bioinformatics1 • 0

Thanks Hyper-Odin

Comment: inquiry related to snpsift by rheab1230 • 0

I have one question related to earlier step where you are formating the .vcf file. You are removing white space and removing format tags ex…

Comment: inquiry related to snpsift by rheab1230 • 0

Hey Kevin, its working now. Earlier I use conda to install the software. But that is not working. So I went to bcftools site and downloaded…

Comment: What does that dip in the density plot mean from a single cell data analysis? by m.sadman.sakib ▴ 100

Thank you very much for the great explanation! Really appreciate it!

Comment: Which method is the best for using in "dba.count" in Diffbind R package by m.sadman.sakib ▴ 100

Thank you very much, Rory!

Comment: How to merge folders that have similar (not the same) names, in a folder keeping by cpad0112 16k

**Before** ``` $ tree . . ├── 123_S1_R1_001 │ └── 123_S1_R1_001.fastq.gz ├── 123_S1_R2_001 │ └── 123_S1_R2_001.fastq.gz ├── 456_S25_R1…

Comment: SNP density plot of aedes genome using bed file by Hamid Ghaedi ★ 1.7k

There is no figure to look at that!

Comment: How to filter VEP results of "missing values" by GenoMax 104k

Looking at the [examples of filters on this page][1] something to try `--filter "LoF_filter not exists"`or `--filter "not LoF_filter`? …

Answer: Measuring pairwise distances between residues/atoms in structural alignment of p by Woa ★ 2.8k

haven't used Pymol for a while but I think you can write a script to automate the analysis rather than doing interactively

Comment: inquiry related to snpsift by Kevin Blighe 75k

Interesting, can you confirm the exact version 1.9 build, basically, please show the output of `bcftools --version`? Also, which operating …

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