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2
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1
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160
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1
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cwl and resolution of enviroment variables
cwl written 6 weeks ago by thomas.e • 50 • updated 7 days ago by wolfganggerlach1981 • 40
1
vote
1
answer
217
views
1
answer
How do I pass literals in CWL workflows?
cwl written 9 days ago by thomas.e • 50 • updated 7 days ago by awilke1972 • 20
2
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1
answer
142
views
1
answer
CWL Workflow Grammar: explanation of "string" option for Workflow step "run" field?
cwl written 22 days ago by bjpope • 10 • updated 7 days ago by wolfganggerlach1981 • 40
0
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0
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133
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0
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cwl job input file
cwl written 8 days ago by wolfganggerlach1981 • 40
1
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0
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108
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0
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Does CWL have a search path for commadlinetools?
cwl written 8 days ago by thomas.e • 50
0
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0
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147
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0
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Job: Bioinformatician, NCI Genomic Data Commons at the University of Chicago, Chicago, IL, USA
python cwl job docker written 8 days ago by Danielle • 240 • updated 8 days ago by genomax ♦ 32k
0
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0
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134
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0
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valid names for unique identifier
cwl written 10 days ago by wolfganggerlach1981 • 40
4
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2
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220
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2
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secondaryFiles for bam: how to handle .bai or/and ^.bai ?
cwl written 17 days ago by liuxf09 • 20
1
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3
answers
165
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3
answers
how to make seconaryFiles work for File in CommandInputRecordField
cwl written 29 days ago by liuxf09 • 20
0
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0
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143
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0
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CWL: Docker image as input parameter (for reference genome files)
cwl written 4 weeks ago by well309 • 10
4
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1
answer
206
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1
answer
CWL question: File location vs path
cwl written 5 weeks ago by wolfganggerlach1981 • 40 • updated 4 weeks ago by Michael R. Crusoe • 660
3
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1
answer
174
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1
answer
CWL: combine two arrays as workflow step input
cwl written 5 weeks ago by well309 • 10 • updated 5 weeks ago by Michael R. Crusoe • 660
4
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0
answers
235
views
0
answers
CWL: word counting
common workflow language cwl written 8 weeks ago by gultagr • 10 • updated 6 weeks ago by WouterDeCoster ♦ 20k
2
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3
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239
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3
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CWL: default values for custom types in a workflow
cwl written 8 weeks ago by thomas.e • 50 • updated 6 weeks ago by Sl.aleksandr28 • 0
0
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0
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123
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0
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Multiple input feature problem
cwl written 6 weeks ago by Sl.aleksandr28 • 0
3
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1
answer
271
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5 follow
1
answer
cwltool SGE support for CWL parallel tasks
toil cwl sge written 3 months ago by Stefano Berri ♦ 3.9k • updated 6 weeks ago by Biostar ♦♦ 20
0
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0
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112
views
0
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CWL: specifing one or more argument
one inputs cwl args more written 6 weeks ago by kevin.o.oluoch • 50
3
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3
answers
256
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3
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cwl: how to add optional input as one element or as array of elements ?
cwl written 8 weeks ago by liuxf09 • 20 • updated 7 weeks ago by thomas.e • 50
2
votes
2
answers
173
views
2
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How process inputs based on a filename pattern using CWL
cwl written 7 weeks ago by thomas.e • 50 • updated 7 weeks ago by StarvingMarvin • 20
6
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2
answers
196
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2
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Warning message: [outdir] is not a file, ignoring
dockstore cwl written 7 weeks ago by Daniel Standage ♦ 3.7k • updated 7 weeks ago by Michael R. Crusoe • 660
1
vote
1
answer
142
views
1
answer
CWL: Linker error doing 'pip install cwlref-runner' on CentOS 6 system
common workflow language centos cwl centos6 pip written 9 weeks ago by Kevin Ernst • 0
1
vote
1
answer
213
views
1
answer
Docker error "Mounts denied" running example workflows from CWL User Guide on Mac OS X
mac os x common workflow language cwl docker macos written 9 weeks ago by Kevin Ernst • 0
0
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0
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131
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0
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What's the best way to handle multi-file inputs in a CWL workflow?
cwl written 9 weeks ago by oneillkza • 40
2
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0
answers
192
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0
answers
CWL: Custom data types
cwl written 3 months ago by unique_g • 60
3
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0
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197
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0
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CWL: Allowed values for parameters
cwl written 3 months ago by unique_g • 60
1
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0
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113
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0
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CWL: Input restrictions for integers
common workflow language cwl written 10 weeks ago by schujo • 10
0
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1
answer
122
views
1
answer
CWL decision making/loop-back
cwl written 10 weeks ago by d.white • 0 • updated 10 weeks ago by Michael R. Crusoe • 660
1
vote
1
answer
192
views
1
answer
CWL: SLurm Job Sheduler
slurm cwl written 10 weeks ago by kevin.o.oluoch • 50 • updated 10 weeks ago by Michael R. Crusoe • 660
2
votes
1
answer
165
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1
answer
CWL: glob patterns must not start with '/'
cwl written 11 weeks ago by sibyllewohlgemuth • 20 • updated 10 weeks ago by Michael R. Crusoe • 660
0
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0
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133
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0
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CWL: A relative path as input
cwl relative path multiple inputs written 10 weeks ago by kevin.o.oluoch • 50
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