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<prev • 169 results • page 1 of 6 • next >
3
votes
1
answer
124
views
1
answer
load/parse cwl using Java
cwl written 29 days ago by pr80ik • 20 • updated 13 days ago by denis.yuen • 90
1
vote
2
answers
1.4k
views
2
answers
CWL: How to refer to input or scattered value of a step
cwl written 23 months ago by mkher • 30 • updated 13 days ago by jshelton • 0
2
votes
1
answer
92
views
1
answer
Creating a temporary directory for tools to use
cwl written 28 days ago by ionox0 • 290
2
votes
1
answer
175
views
1
answer
CWL pipe doesn't seem to be working (Solved: user error)
cwl written 8 weeks ago by ionox0 • 290
0
votes
1
answer
1.0k
views
1
answer
Getting started with CWL: Unrecognized version v1.0?
cwl written 2.2 years ago by sb10 • 40 • updated 6 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
113
views
1
answer
How to specify enum symbols in record type definition?
cwl written 7 weeks ago by ionox0 • 290 • updated 6 weeks ago by Michael R. Crusoe • 1.1k
0
votes
1
answer
135
views
1
answer
How to run SPAdes inside docker?
container cwl docker written 7 weeks ago by jeetsahu • 0 • updated 6 weeks ago by Michael R. Crusoe • 1.1k
2
votes
2
answers
190
views
2
answers
Load/parse cwl in python
cwl written 8 weeks ago by johnegarza • 0 • updated 7 weeks ago by Michael R. Crusoe • 1.1k
0
votes
0
answers
126
views
0
answers
CWL to check the output directory and run for non-existing files
next-gen cwl rna-seq written 8 weeks ago by a.james • 120
1
vote
3
answers
789
views
3
answers
cwl for h3abionet16s pipeline failing with non-docker option
cwl written 2.1 years ago by Shakuntala Baichoo • 0 • updated 9 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
208
views
1
answer
CWL: How to return int or string[] from CommandLineTool?
cwl written 10 weeks ago by uagrif • 10 • updated 9 weeks ago by Michael R. Crusoe • 1.1k
0
votes
0
answers
277
views
0
answers
Did not find output file with glob pattern: for creating runtime output directory in CWL
cwl written 11 weeks ago by a.james • 120
0
votes
2
answers
231
views
2
answers
cwltool issue using SoftwareRequirement
cwltool cwl tool written 12 weeks ago by sf21 • 10
6
votes
2
answers
246
views
2
answers
best practice for renaming file in CWL workflow
cwl written 3 months ago by ionox0 • 290 • updated 12 weeks ago by Michael R. Crusoe • 1.1k
2
votes
1
answer
194
views
1
answer
size considerations CWL Toil workflow step inputs
toil cwl written 12 weeks ago by ionox0 • 290
7
votes
1
answer
222
views
1
answer
toil stats under-reporting memory usage?
toil cwl written 3 months ago by ionox0 • 290
3
votes
1
answer
163
views
1
answer
possible to show job names in toil stats command using cwl workflow
toil cwl written 3 months ago by ionox0 • 290 • updated 3 months ago by Michael R. Crusoe • 1.1k
4
votes
1
answer
158
views
1
answer
Bottleneck for scattered subworkflows
toil cwl written 3 months ago by ionox0 • 290 • updated 3 months ago by Carlos Borroto • 1.8k
1
vote
1
answer
247
views
1
answer
Possible to combine inputs using valueFrom for scatter
cwl written 4 months ago by ionox0 • 290 • updated 4 months ago by Michael R. Crusoe • 1.1k
0
votes
0
answers
223
views
0
answers
CWL Error Empty Scatter
cwl workflow pipeline scatter written 4 months ago by HL • 0
0
votes
1
answer
190
views
1
answer
Purpose of secondaryFiles in InputParameter and CommandInputParameter
cwl written 4 months ago by wolfganggerlach1981 • 50
2
votes
1
answer
234
views
1
answer
Rules regarding secondaryFiles in subworkflows
cwl written 5 months ago by ionox0 • 290 • updated 5 months ago by bogdan.gavrilovic • 200
0
votes
1
answer
309
views
1
answer
scatter over optional argument
cwl written 6 months ago by ionox0 • 290 • updated 5 months ago by bogdan.gavrilovic • 200
2
votes
1
answer
215
views
1
answer
Are CWL CommandLineTool arguments guaranteed to be contiguous?
cwl written 5 months ago by jh36 • 0 • updated 5 months ago by drkennetz • 360
1
vote
1
answer
324
views
5 follow
1
answer
change temp folder in cwl
commonworkflowlanguage cwl written 6 months ago by roalva1 • 80 • updated 5 months ago by stian • 0
2
votes
3
answers
437
views
3
answers
CWL: Getting output file of a CommandLineTool using glob
common workflow language cwl written 5 months ago by skanwal • 20 • updated 5 months ago by inutano • 10
2
votes
2
answers
389
views
6 follow
2
answers
CWL Workflow renaming outputs
cwl written 6 months ago by giacomo.tag • 10 • updated 6 months ago by drkennetz • 360
2
votes
3
answers
264
views
3
answers
[cwl] referencing to list of paths in an array of files or direcories
cwl written 6 months ago by grange • 0
1
vote
1
answer
259
views
5 follow
1
answer
Is there a way to set a basename for an output Directory?
cwl written 6 months ago by ionox0 • 290
3
votes
1
answer
500
views
1
answer
Workflow Error - "list indices must be integers, not str"
cwl written 6 months ago by ttom • 200
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