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<prev • 179 results • page 1 of 6 • next >
1
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1
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77
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1
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CWL LoadListing - cwltool can't handle large number of input files
cwl written 20 days ago by Tom • 130
2
votes
1
answer
110
views
1
answer
Why is ShellCommandRequirement necessary for Pipes
cwl written 5 days ago by ionox0 • 310
3
votes
2
answers
96
views
2
answers
CWL NO JSON object could be decoded
json cwl written 6 days ago by yifan wang • 10 • updated 6 days ago by Tom • 130
3
votes
1
answer
113
views
1
answer
Can I use CWL with Amazon's Simple Workflow Service?
amazon cwl interoperability written 11 days ago by lewis.mcgibbney • 10 • updated 11 days ago by Tom • 130
2
votes
1
answer
114
views
1
answer
CWL Workflow removing input files
deepbinner cwl written 26 days ago by Tom • 130
3
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1
answer
107
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1
answer
CWL to write into for writing lines one from one file to new file
cwl written 14 days ago by a.james • 170
0
votes
0
answers
68
views
0
answers
CWL toil-cwl-runner for two samples, could not find a error log and reason for failure
cwl written 17 days ago by a.james • 170
3
votes
1
answer
198
views
1
answer
CWL with R returns empty output directory with "Final process status is success" status
cwl rna-seq written 24 days ago by a.james • 170
4
votes
1
answer
116
views
1
answer
CWL can't find tools it's supposed to run
deepbinner cwl written 27 days ago by Tom • 130 • updated 27 days ago by Michael R. Crusoe • 1.2k
2
votes
1
answer
221
views
1
answer
CWL to check the output directory and run for non-existing files
next-gen cwl rna-seq written 3 months ago by a.james • 170 • updated 27 days ago by Tom • 130
0
votes
1
answer
157
views
1
answer
Upgrade to Toil 3.18 no longer allows optional parameters to be omitted when passed through subworkflow
toil cwl written 29 days ago by ionox0 • 310
3
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1
answer
177
views
1
answer
load/parse cwl using Java
cwl written 9 weeks ago by pr80ik • 20 • updated 6 weeks ago by denis.yuen • 90
2
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2
answers
1.5k
views
2
answers
CWL: How to refer to input or scattered value of a step
cwl written 2.0 years ago by mkher • 30 • updated 6 weeks ago by jshelton • 0
2
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1
answer
129
views
1
answer
Creating a temporary directory for tools to use
cwl written 9 weeks ago by ionox0 • 310
2
votes
1
answer
217
views
1
answer
CWL pipe doesn't seem to be working (Solved: user error)
cwl written 3 months ago by ionox0 • 310
0
votes
1
answer
1.0k
views
1
answer
Getting started with CWL: Unrecognized version v1.0?
cwl written 2.3 years ago by sb10 • 40 • updated 11 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
152
views
1
answer
How to specify enum symbols in record type definition?
cwl written 12 weeks ago by ionox0 • 310 • updated 11 weeks ago by Michael R. Crusoe • 1.2k
0
votes
1
answer
172
views
1
answer
How to run SPAdes inside docker?
container cwl docker written 12 weeks ago by jeetsahu • 0 • updated 11 weeks ago by Michael R. Crusoe • 1.2k
2
votes
2
answers
255
views
2
answers
Load/parse cwl in python
cwl written 3 months ago by johnegarza • 0 • updated 12 weeks ago by Michael R. Crusoe • 1.2k
1
vote
3
answers
826
views
3
answers
cwl for h3abionet16s pipeline failing with non-docker option
cwl written 2.2 years ago by Shakuntala Baichoo • 0 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
299
views
1
answer
CWL: How to return int or string[] from CommandLineTool?
cwl written 3 months ago by uagrif • 10 • updated 3 months ago by Michael R. Crusoe • 1.2k
0
votes
0
answers
350
views
0
answers
Did not find output file with glob pattern: for creating runtime output directory in CWL
cwl written 3 months ago by a.james • 170
0
votes
2
answers
270
views
2
answers
cwltool issue using SoftwareRequirement
cwltool cwl tool written 3 months ago by sf21 • 10
6
votes
2
answers
301
views
2
answers
best practice for renaming file in CWL workflow
cwl written 4 months ago by ionox0 • 310 • updated 4 months ago by Michael R. Crusoe • 1.2k
2
votes
1
answer
220
views
1
answer
size considerations CWL Toil workflow step inputs
toil cwl written 4 months ago by ionox0 • 310
7
votes
1
answer
253
views
1
answer
toil stats under-reporting memory usage?
toil cwl written 4 months ago by ionox0 • 310
3
votes
1
answer
183
views
1
answer
possible to show job names in toil stats command using cwl workflow
toil cwl written 4 months ago by ionox0 • 310 • updated 4 months ago by Michael R. Crusoe • 1.2k
4
votes
1
answer
192
views
1
answer
Bottleneck for scattered subworkflows
toil cwl written 5 months ago by ionox0 • 310 • updated 5 months ago by Carlos Borroto • 1.8k
1
vote
1
answer
279
views
1
answer
Possible to combine inputs using valueFrom for scatter
cwl written 5 months ago by ionox0 • 310 • updated 5 months ago by Michael R. Crusoe • 1.2k
0
votes
0
answers
252
views
0
answers
CWL Error Empty Scatter
cwl workflow pipeline scatter written 5 months ago by HL • 0
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