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<prev • 96 results • page 1 of 4 • next >
1
vote
2
answers
146
views
2
answers
--preserve_environment with docker containers?
common workflow language cwltool cwl written 20 days ago by Biowoogles • 20
0
votes
1
answer
160
views
1
answer
CWL: specifing one or more argument
one inputs cwl args more written 3 months ago by kevin.o.oluoch • 50 • updated 14 days ago by Michael R. Crusoe • 690
4
votes
1
answer
330
views
1
answer
CWL: word counting
common workflow language cwl written 4 months ago by gultagr • 10 • updated 14 days ago by Michael R. Crusoe • 690
1
vote
1
answer
214
views
1
answer
CWL: Docker image as input parameter (for reference genome files)
cwl written 3 months ago by well309 • 60 • updated 14 days ago by Michael R. Crusoe • 690
2
votes
1
answer
167
views
1
answer
Does CWL have a search path for commadlinetools?
cwl written 9 weeks ago by thomas.e • 70 • updated 14 days ago by Michael R. Crusoe • 690
1
vote
1
answer
222
views
1
answer
cwl job input file
cwl written 9 weeks ago by wolfganggerlach1981 • 50 • updated 14 days ago by Michael R. Crusoe • 690
5
votes
1
answer
307
views
1
answer
CWL: print out command lines?
command cwl written 8 weeks ago by sb10 • 40 • updated 6 weeks ago by karl.sebby • 50
8
votes
1
answer
234
views
6 follow
1
answer
CWL rerunning completed output
common workflow language cwl written 6 weeks ago by bruce.moran • 320 • updated 6 weeks ago by well309 • 60
2
votes
1
answer
238
views
1
answer
CWL bwa create index to bwa mem alignment workflow
common workflow language cwl written 7 weeks ago by Biowoogles • 20 • updated 6 weeks ago by well309 • 60
1
vote
1
answer
169
views
1
answer
tabix and CWL
cwl written 8 weeks ago by thomas.e • 70
3
votes
3
answers
288
views
3
answers
How process inputs based on a filename pattern using CWL
cwl written 3 months ago by thomas.e • 70
2
votes
1
answer
216
views
1
answer
cwl and resolution of enviroment variables
cwl written 3 months ago by thomas.e • 70 • updated 9 weeks ago by wolfganggerlach1981 • 50
1
vote
1
answer
287
views
1
answer
How do I pass literals in CWL workflows?
cwl written 10 weeks ago by thomas.e • 70 • updated 9 weeks ago by awilke1972 • 20
2
votes
1
answer
202
views
1
answer
CWL Workflow Grammar: explanation of "string" option for Workflow step "run" field?
cwl written 11 weeks ago by bjpope • 10 • updated 9 weeks ago by wolfganggerlach1981 • 50
1
vote
0
answers
339
views
0
answers
Job: Bioinformatician, NCI Genomic Data Commons at the University of Chicago, Chicago, IL, USA
python cwl job docker written 10 weeks ago by Danielle • 250 • updated 10 weeks ago by genomax ♦ 34k
0
votes
0
answers
177
views
0
answers
valid names for unique identifier
cwl written 10 weeks ago by wolfganggerlach1981 • 50
4
votes
2
answers
292
views
2
answers
secondaryFiles for bam: how to handle .bai or/and ^.bai ?
cwl written 11 weeks ago by liuxf09 • 20
1
vote
3
answers
210
views
3
answers
how to make seconaryFiles work for File in CommandInputRecordField
cwl written 3 months ago by liuxf09 • 20
4
votes
1
answer
255
views
1
answer
CWL question: File location vs path
cwl written 3 months ago by wolfganggerlach1981 • 50 • updated 3 months ago by Michael R. Crusoe • 690
3
votes
1
answer
242
views
1
answer
CWL: combine two arrays as workflow step input
cwl written 3 months ago by well309 • 60 • updated 3 months ago by Michael R. Crusoe • 690
2
votes
3
answers
331
views
3
answers
CWL: default values for custom types in a workflow
cwl written 3 months ago by thomas.e • 70 • updated 3 months ago by Sl.aleksandr28 • 0
0
votes
0
answers
163
views
0
answers
Multiple input feature problem
cwl written 3 months ago by Sl.aleksandr28 • 0
3
votes
1
answer
350
views
5 follow
1
answer
cwltool SGE support for CWL parallel tasks
toil cwl sge written 5 months ago by Stefano Berri ♦ 3.9k • updated 3 months ago by Biostar ♦♦ 20
3
votes
3
answers
344
views
3
answers
cwl: how to add optional input as one element or as array of elements ?
cwl written 4 months ago by liuxf09 • 20 • updated 3 months ago by thomas.e • 70
6
votes
2
answers
249
views
2
answers
Warning message: [outdir] is not a file, ignoring
dockstore cwl written 3 months ago by Daniel Standage ♦ 3.7k • updated 3 months ago by Michael R. Crusoe • 690
1
vote
1
answer
221
views
1
answer
CWL: Linker error doing 'pip install cwlref-runner' on CentOS 6 system
common workflow language centos cwl centos6 pip written 4 months ago by Kevin Ernst • 0
1
vote
1
answer
403
views
1
answer
Docker error "Mounts denied" running example workflows from CWL User Guide on Mac OS X
mac os x common workflow language cwl docker macos written 4 months ago by Kevin Ernst • 0
0
votes
0
answers
189
views
0
answers
What's the best way to handle multi-file inputs in a CWL workflow?
cwl written 4 months ago by oneillkza • 40
2
votes
0
answers
244
views
0
answers
CWL: Custom data types
cwl written 5 months ago by unique_g • 60
3
votes
0
answers
265
views
0
answers
CWL: Allowed values for parameters
cwl written 5 months ago by unique_g • 60
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