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<prev • 231 results • page 1 of 8 • next >
1
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make paths variable in .cwl workflows and corresponding -job files
common workflow language cwl written 3.2 years ago by c.ravarani • 0 • updated 14 days ago by Biostar ♦♦ 20
4
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0
answers
118
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0
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News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
news cwl written 6 weeks ago by Michael R. Crusoe • 1.8k • updated 6 weeks ago by Asaf ♦ 6.5k
1
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1
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210
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1
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ask for a CWL script to perform FASTQC to get quality control files, then use the folder of having these quality control files as input for MultiQC
cwl written 7 weeks ago by aimin.at.work • 0 • updated 7 weeks ago by Phil Ewels • 470
1
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1
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301
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1
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Can I use output eval with CWL to create the list of output files (i.e. replace the glob results)?
common workflow language cwl written 7 months ago by mavrommatis.konstantinos • 10 • updated 7 weeks ago by kaushik.ghose • 60
2
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1
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309
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1
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bedtools sort -faidx in CWL
bedtools cwl sort written 6 months ago by dami • 10 • updated 7 weeks ago by kaushik.ghose • 60
4
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2
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405
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2
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CWL NO JSON object could be decoded
json cwl written 9 months ago by yifan wang • 20 • updated 8 weeks ago by Biostar ♦♦ 20
6
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2
answers
211
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2
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CWL: Using the "EnvVarRequirement" to pass an environment variable to a script
common workflow language cwl written 9 weeks ago by skanwal • 50
2
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1
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146
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1
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CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
workflow cwl written 10 weeks ago by Linda • 0 • updated 8 weeks ago by Michael R. Crusoe • 1.8k
5
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1
answer
163
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1
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secondaryFiles where nameroot differs
cwl written 12 weeks ago by Peter vH • 130 • updated 12 weeks ago by Michael R. Crusoe • 1.8k
4
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1
answer
144
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1
answer
Missing CWL files in a Directory when passed as input
cwl written 3 months ago by asha • 20 • updated 3 months ago by Tom • 520
2
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0
answers
287
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0
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Job: Seeking bioinformaticians and data engineers for product research study
aws cwl workflows rna-seq job written 3 months ago by duminda.aluthgamage • 20
2
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1
answer
565
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1
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cwl: unrecognized extension field, $schemas section
cwl written 22 months ago by ninsch3000 • 10 • updated 3 months ago by Biostar ♦♦ 20
12
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1
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254
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5 follow
1
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Input specific output filenames
cwl rna-seq written 3 months ago by nmaki • 30 • updated 3 months ago by Tom • 520
4
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2
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256
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2
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how do I default to /dev/null in CommandLineTool
cwl written 3 months ago by Azat Badretdin • 0 • updated 3 months ago by Michael R. Crusoe • 1.8k
7
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3
answers
968
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3
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Is there a schema for CWL inputs/job files?
cwl written 6 months ago by karl.sebby • 70
3
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0
answers
135
views
0
answers
common workflow language
cwl written 3 months ago by kalwad.piyusha7 • 10
3
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1
answer
216
views
1
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Change execution directory before running a tool (CWL)
cwl written 4 months ago by andreas.bleuler • 20 • updated 4 months ago by Tom • 520
2
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1
answer
207
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1
answer
Save CURL output to file
cwl written 4 months ago by amnoyman • 0 • updated 4 months ago by inutano • 30
6
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3
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361
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3
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Parse CWL to graph data structure or database?
neo4j cwl written 5 months ago by mcpherson • 40
3
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2
answers
188
views
2
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More examples of parser_v1.0.py usage?
python cwl parser written 4 months ago by mcpherson • 40
9
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2
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255
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2
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Add an item from input to an output array in CWL
cwl written 4 months ago by drkennetz • 440 • updated 4 months ago by Michael R. Crusoe • 1.8k
3
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2
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207
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2
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CWL: Array of strings in workflow
cwl written 4 months ago by mkher • 50
0
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1
answer
171
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1
answer
Strict validation for input and inputBinding values with same position?
cwl validation written 4 months ago by brunodepaulak • 0 • updated 4 months ago by Tom • 520
1
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1
answer
183
views
1
answer
cwl glob all the output files in a directory
cwl written 4 months ago by lizhichao • 80 • updated 4 months ago by Michael R. Crusoe • 1.8k
6
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2
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620
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2
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samtools sort: failed to create temporary file: No space left on device
samtools cwl written 5 months ago by lizhichao • 80 • updated 5 months ago by ATpoint ♦ 26k
2
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1
answer
213
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1
answer
cwl: Source 'outputtbi' of type ["null", "File"] may be incompatible
cwl written 5 months ago by lizhichao • 80
1
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1
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195
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1
answer
How can I Write the workflow including too much inputs params
cwl written 5 months ago by lizhichao • 80
2
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2
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223
views
2
answers
cwl: Multiple matches for output item that is a single file
cwl written 5 months ago by lizhichao • 80
1
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2
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198
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2
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CWL : output file refer to inputs param
cwl written 5 months ago by lizhichao • 80
1
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0
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220
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0
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cwltool "invalid field" error messages
cwltool cwl written 5 months ago by Tom • 520
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