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3
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1
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582
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1
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CWL: Is there a way to only pass certain fields from a `record` type to a step?
cwl written 2.9 years ago by ionox0 • 360 • updated 5 days ago by Biostar ♦♦ 20
0
votes
0
answers
109
views
0
answers
cwl GATK GenotypeGVCFs error in linux due to quotes in filenames
gatk cwl genotypegvcfs written 7 weeks ago by cocchi.e89 • 120
2
votes
3
answers
960
views
3
answers
cwl kubernetes support?
cwl written 21 months ago by xiao2 • 0 • updated 11 weeks ago by anovak • 70
2
votes
1
answer
245
views
1
answer
Parallelize CWL workflow over multiple instances on AWS
toil cwl written 6 months ago by uray10 • 10 • updated 5 months ago by asha.rostamianfar • 10
2
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0
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210
views
0
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cwl: pass array of elements with repeated input flags
array gatk cwl written 5 months ago by cocchi.e89 • 120
1
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0
answers
462
views
0
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Job: Software Developer: Bioinformatics Content Lead
python cwl job wdl written 7 months ago by karl.sebby • 100
0
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0
answers
185
views
0
answers
Meaning of timing variables in "executionEvents" of workflows in cromwell metadata
wdl workflowmetadata cwl cromwell written 6 months ago by douwevanderleest • 10
1
vote
1
answer
217
views
1
answer
CWL: Min and max for tool input values (float,int)
cwl written 9 months ago by fjrmoreews • 0 • updated 8 months ago by Michael R. Crusoe • 1.8k
7
votes
2
answers
764
views
2
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Parse CWL to graph data structure or database?
neo4j cwl written 19 months ago by mcpherson • 40 • updated 9 months ago by ngsbioinformatics • 30
3
votes
3
answers
2.5k
views
3
answers
CWL: default values for custom types in a workflow
cwl written 3.6 years ago by thomas.e • 110 • updated 10 months ago by Biostar ♦♦ 20
6
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0
answers
389
views
0
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News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
thanks news cwl written 15 months ago by Michael R. Crusoe • 1.8k • updated 10 months ago by ATpoint ♦ 44k
0
votes
0
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238
views
0
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CWL - glob an array of output files based on a single input string
cwl written 10 months ago by drkennetz • 510
17
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2
answers
1.3k
views
5 follow
2
answers
CommandLineTool doesn't finish
cwl written 2.6 years ago by Tom • 530
5
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0
answers
990
views
0
answers
Tutorial: How to run CWL with Nextflow
tutorial cwl nextflow written 11 months ago by steve • 2.7k
2
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2
answers
625
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2
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Can I use output eval with CWL to create the list of output files (i.e. replace the glob results)?
common workflow language cwl written 21 months ago by mavrommatis.konstantinos • 10 • updated 11 months ago by michael.franklin • 10
1
vote
1
answer
1.2k
views
1
answer
make paths variable in .cwl workflows and corresponding -job files
common workflow language cwl written 4.3 years ago by c.ravarani • 0 • updated 14 months ago by Biostar ♦♦ 20
1
vote
1
answer
558
views
1
answer
ask for a CWL script to perform FASTQC to get quality control files, then use the folder of having these quality control files as input for MultiQC
cwl written 15 months ago by aimin.at.work • 0 • updated 15 months ago by Phil Ewels • 620
2
votes
1
answer
635
views
1
answer
bedtools sort -faidx in CWL
bedtools cwl sort written 19 months ago by dami • 10 • updated 15 months ago by kaushik.ghose • 70
4
votes
2
answers
753
views
2
answers
CWL NO JSON object could be decoded
json cwl written 23 months ago by yifan wang • 20 • updated 15 months ago by Biostar ♦♦ 20
6
votes
2
answers
704
views
2
answers
CWL: Using the "EnvVarRequirement" to pass an environment variable to a script
common workflow language cwl written 15 months ago by skanwal • 50
2
votes
1
answer
444
views
1
answer
CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
workflow cwl written 16 months ago by Linda • 0 • updated 15 months ago by Michael R. Crusoe • 1.8k
5
votes
1
answer
465
views
1
answer
secondaryFiles where nameroot differs
cwl written 16 months ago by Peter vH • 130 • updated 16 months ago by Michael R. Crusoe • 1.8k
4
votes
1
answer
413
views
1
answer
Missing CWL files in a Directory when passed as input
cwl written 17 months ago by asha • 20 • updated 16 months ago by Tom • 530
2
votes
0
answers
560
views
0
answers
Job: Seeking bioinformaticians and data engineers for product research study
aws cwl workflows rna-seq job written 16 months ago by duminda.aluthgamage • 30
2
votes
1
answer
808
views
1
answer
cwl: unrecognized extension field, $schemas section
cwl written 3.0 years ago by ninsch3000 • 10 • updated 16 months ago by Biostar ♦♦ 20
13
votes
1
answer
515
views
5 follow
1
answer
Input specific output filenames
cwl rna-seq written 17 months ago by nmaki • 30 • updated 17 months ago by Tom • 530
4
votes
2
answers
515
views
2
answers
how do I default to /dev/null in CommandLineTool
cwl written 17 months ago by Azat Badretdin • 0 • updated 17 months ago by Michael R. Crusoe • 1.8k
9
votes
3
answers
1.4k
views
5 follow
3
answers
Is there a schema for CWL inputs/job files?
cwl written 20 months ago by karl.sebby • 100
3
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0
answers
299
views
0
answers
common workflow language
cwl written 17 months ago by kalwad.piyusha7 • 10
3
votes
1
answer
436
views
1
answer
Change execution directory before running a tool (CWL)
cwl written 17 months ago by andreas.bleuler • 20 • updated 17 months ago by Tom • 530
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