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<prev • 232 results • page 1 of 8 • next >
4
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Tutorial: How to run CWL with Nextflow
tutorial cwl nextflow written 6 days ago by steve • 2.4k
2
votes
2
answers
370
views
2
answers
Can I use output eval with CWL to create the list of output files (i.e. replace the glob results)?
common workflow language cwl written 9 months ago by mavrommatis.konstantinos • 10 • updated 13 days ago by michael.franklin • 10
5
votes
0
answers
180
views
0
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News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
thanks news cwl written 4 months ago by Michael R. Crusoe • 1.8k
1
vote
1
answer
1.0k
views
1
answer
make paths variable in .cwl workflows and corresponding -job files
common workflow language cwl written 3.4 years ago by c.ravarani • 0 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
264
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1
answer
ask for a CWL script to perform FASTQC to get quality control files, then use the folder of having these quality control files as input for MultiQC
cwl written 4 months ago by aimin.at.work • 0 • updated 4 months ago by Phil Ewels • 490
2
votes
1
answer
363
views
1
answer
bedtools sort -faidx in CWL
bedtools cwl sort written 8 months ago by dami • 10 • updated 4 months ago by kaushik.ghose • 60
4
votes
2
answers
479
views
2
answers
CWL NO JSON object could be decoded
json cwl written 12 months ago by yifan wang • 20 • updated 4 months ago by Biostar ♦♦ 20
6
votes
2
answers
283
views
2
answers
CWL: Using the "EnvVarRequirement" to pass an environment variable to a script
common workflow language cwl written 4 months ago by skanwal • 50
2
votes
1
answer
192
views
1
answer
CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
workflow cwl written 5 months ago by Linda • 0 • updated 4 months ago by Michael R. Crusoe • 1.8k
5
votes
1
answer
223
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1
answer
secondaryFiles where nameroot differs
cwl written 5 months ago by Peter vH • 130 • updated 5 months ago by Michael R. Crusoe • 1.8k
4
votes
1
answer
185
views
1
answer
Missing CWL files in a Directory when passed as input
cwl written 5 months ago by asha • 20 • updated 5 months ago by Tom • 520
2
votes
0
answers
343
views
0
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Job: Seeking bioinformaticians and data engineers for product research study
aws cwl workflows rna-seq job written 5 months ago by duminda.aluthgamage • 30
2
votes
1
answer
617
views
1
answer
cwl: unrecognized extension field, $schemas section
cwl written 2.1 years ago by ninsch3000 • 10 • updated 5 months ago by Biostar ♦♦ 20
13
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1
answer
304
views
5 follow
1
answer
Input specific output filenames
cwl rna-seq written 5 months ago by nmaki • 30 • updated 5 months ago by Tom • 520
4
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2
answers
298
views
2
answers
how do I default to /dev/null in CommandLineTool
cwl written 5 months ago by Azat Badretdin • 0 • updated 5 months ago by Michael R. Crusoe • 1.8k
7
votes
3
answers
1.0k
views
3
answers
Is there a schema for CWL inputs/job files?
cwl written 8 months ago by karl.sebby • 70
3
votes
0
answers
166
views
0
answers
common workflow language
cwl written 6 months ago by kalwad.piyusha7 • 10
3
votes
1
answer
260
views
1
answer
Change execution directory before running a tool (CWL)
cwl written 6 months ago by andreas.bleuler • 20 • updated 6 months ago by Tom • 520
2
votes
1
answer
270
views
1
answer
Save CURL output to file
cwl written 6 months ago by amnoyman • 0 • updated 6 months ago by inutano • 30
6
votes
3
answers
409
views
3
answers
Parse CWL to graph data structure or database?
neo4j cwl written 8 months ago by mcpherson • 40
3
votes
2
answers
223
views
2
answers
More examples of parser_v1.0.py usage?
python cwl parser written 7 months ago by mcpherson • 40
9
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2
answers
360
views
2
answers
Add an item from input to an output array in CWL
cwl written 7 months ago by drkennetz • 470 • updated 6 months ago by Michael R. Crusoe • 1.8k
3
votes
2
answers
286
views
2
answers
CWL: Array of strings in workflow
cwl written 7 months ago by mkher • 50
0
votes
1
answer
211
views
1
answer
Strict validation for input and inputBinding values with same position?
cwl validation written 7 months ago by brunodepaulak • 0 • updated 7 months ago by Tom • 520
1
vote
1
answer
243
views
1
answer
cwl glob all the output files in a directory
cwl written 7 months ago by lizhichao • 80 • updated 7 months ago by Michael R. Crusoe • 1.8k
6
votes
2
answers
994
views
2
answers
samtools sort: failed to create temporary file: No space left on device
samtools cwl written 7 months ago by lizhichao • 80 • updated 7 months ago by ATpoint ♦ 29k
2
votes
1
answer
259
views
1
answer
cwl: Source 'outputtbi' of type ["null", "File"] may be incompatible
cwl written 7 months ago by lizhichao • 80
1
vote
1
answer
220
views
1
answer
How can I Write the workflow including too much inputs params
cwl written 7 months ago by lizhichao • 80
2
votes
2
answers
257
views
2
answers
cwl: Multiple matches for output item that is a single file
cwl written 7 months ago by lizhichao • 80
1
vote
2
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235
views
2
answers
CWL : output file refer to inputs param
cwl written 7 months ago by lizhichao • 80
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