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26
votes
5
answers
4.6k
views
8 follow
5
answers
Minimal CWL (Common Workflow Language) workflow from Makefile
cwl makefile written 4.8 years ago by Pierre Lindenbaum128k • updated 4.7 years ago by sahiilseth30
17
votes
2
answers
1.2k
views
7 follow
2
answers
Workflows! Where is the code?
cwl workflows wdl written 2.0 years ago by syntax60 • updated 2.0 years ago by Michael R. Crusoe1.8k
2
votes
2
answers
1.1k
views
7 follow
2
answers
CWL Workflow renaming outputs
cwl written 22 months ago by giacomo.tag10 • updated 22 months ago by drkennetz480
12
votes
1
answer
3.1k
views
6 follow
1
answer
CWL: reading files within an expressionTool
common-workflow-language cwl javascript written 3.5 years ago by karl.nordstrom90 • updated 3.5 years ago by alaindomissy160
9
votes
2
answers
879
views
6 follow
2
answers
Advice on rendering a config file
cwl initialworkdirrequirement written 3.4 years ago by psaffrey20 • updated 3.4 years ago by Michael R. Crusoe1.8k
7
votes
1
answer
1.5k
views
5 follow
1
answer
Simple(?) workflow, can't sort out what output goes where
cwl written 3.5 years ago by starkruzr20 • updated 3.1 years ago by Biostar ♦♦ 20
9
votes
2
answers
3.1k
views
5 follow
2
answers
CWL: How do I use pipes?
cwl written 3.4 years ago by mkher50 • updated 3.3 years ago by karl.sebby70
8
votes
1
answer
1.1k
views
5 follow
1
answer
CWL rerunning completed output
common workflow language cwl written 2.7 years ago by bruce.moran780 • updated 2.7 years ago by well30970
5
votes
2
answers
1.6k
views
5 follow
2
answers
Is there a good way to test CWL tools and workflows?
cwl written 2.1 years ago by Carlos Borroto1.9k • updated 24 months ago by ionox0360
17
votes
2
answers
1.1k
views
5 follow
2
answers
CommandLineTool doesn't finish
cwl written 24 months ago by Tom520
4
votes
1
answer
962
views
5 follow
1
answer
change temp folder in cwl
commonworkflowlanguage cwl written 23 months ago by roalva180 • updated 22 months ago by stian30
1
vote
1
answer
485
views
5 follow
1
answer
7
votes
2
answers
996
views
5 follow
2
answers
best practice for renaming file in CWL workflow
cwl written 19 months ago by ionox0360 • updated 19 months ago by Michael R. Crusoe1.8k
13
votes
1
answer
354
views
5 follow
1
answer
Input specific output filenames
cwl rna-seq written 8 months ago by nmaki30 • updated 8 months ago by Tom520
3
votes
1
answer
1.6k
views
1
answer
cwltool SGE support for CWL parallel tasks
toil cwl sge written 3.1 years ago by Stefano Berri4.1k • updated 2.9 years ago by Biostar ♦♦ 20
7
votes
1
answer
1.8k
views
1
answer
CWL: word counting
common workflow language cwl written 2.9 years ago by gultagr10 • updated 2.6 years ago by Michael R. Crusoe1.8k
3
votes
3
answers
2.0k
views
3
answers
CWL: default values for custom types in a workflow
cwl written 2.9 years ago by thomas.e110 • updated 9 weeks ago by Biostar ♦♦ 20
5
votes
2
answers
930
views
2
answers
4
votes
3
answers
1.6k
views
3
answers
Converting stdout (File) to string
cwl written 2.5 years ago by eduardo10 • updated 2.5 years ago by Michael R. Crusoe1.8k
2
votes
1
answer
938
views
1
answer
Output files in the input directory
cwl written 2.4 years ago by thomas.e110 • updated 2.4 years ago by Michael R. Crusoe1.8k
5
votes
2
answers
655
views
2
answers
String concatenation for output
cwl written 23 months ago by ttom210 • updated 23 months ago by drkennetz480
6
votes
2
answers
676
views
2
answers
String editing for output file name
cwl written 23 months ago by ttom210
2
votes
1
answer
549
views
1
answer
Is there a way to convert ["null", File] to File in CWL?
cwl written 23 months ago by Azat Badretdin0 • updated 23 months ago by bogdan.gavrilovic230
1
vote
1
answer
624
views
1
answer
scatter over optional argument
cwl written 22 months ago by ionox0360 • updated 21 months ago by bogdan.gavrilovic230
4
votes
2
answers
881
views
2
answers
Load/parse cwl in python
cwl written 18 months ago by johnegarza0 • updated 18 months ago by Michael R. Crusoe1.8k
13
votes
1
answer
652
views
1
answer
Markduplicates did not find output file with glob pattern
cwl written 14 months ago by yifan wang20 • updated 14 months ago by Michael R. Crusoe1.8k
2
votes
2
answers
442
views
2
answers
2
votes
1
answer
425
views
1
answer
bedtools sort -faidx in CWL
bedtools cwl sort written 11 months ago by dami10 • updated 7 months ago by kaushik.ghose70
8
votes
1
answer
349
views
1
answer
CWL :Append the ref input used in toolkit
cwl written 11 months ago by lizhichao80 • updated 11 months ago by Michael R. Crusoe1.8k
7
votes
2
answers
494
views
2
answers
Parse CWL to graph data structure or database?
neo4j cwl written 11 months ago by mcpherson40 • updated 5 weeks ago by ngsbioinformatics30
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