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26
votes
5
answers
4.3k
views
8 follow
5
answers
Minimal CWL (Common Workflow Language) workflow from Makefile
cwl makefile written 3.9 years ago by Pierre Lindenbaum ♦ 120k • updated 3.7 years ago by sahiilseth • 30
2
votes
1
answer
868
views
1
answer
common workflow language parser
latest hpcc cwl R sequencing written 3.7 years ago by sahiilseth • 30 • updated 3.3 years ago by Michael R. Crusoe • 1.5k
3
votes
1
answer
1.8k
views
1
answer
How to specify an optional input for a complex type in CWL?
common-workflow-language cwl written 3.0 years ago by anton.khodak • 0 • updated 2.8 years ago by Michael R. Crusoe • 1.5k
4
votes
1
answer
1.9k
views
1
answer
Example cwl workflow (for v1.0)?
cwl written 2.9 years ago by Peter vH • 100 • updated 2.9 years ago by Michael R. Crusoe • 1.5k
2
votes
2
answers
761
views
2
answers
CWL-draft 3 installation
cwl written 2.9 years ago by farahk • 20 • updated 2.9 years ago by Michael R. Crusoe • 1.5k
1
vote
0
answers
1.6k
views
0
answers
CWL : file could not be created with exception File not found
gatk cwl written 2.9 years ago by skanwal • 20
4
votes
1
answer
1.1k
views
1
answer
Mixing CWL workflow versions (including draft-3 tool in v1.0 workflow)
cwl written 2.9 years ago by Peter vH • 100 • updated 2.9 years ago by Michael R. Crusoe • 1.5k
0
votes
1
answer
1.2k
views
1
answer
Question: Copying to multiple files using CWL v1.0
common-workflow-language cwl written 2.9 years ago by bryan.cosca • 0 • updated 2.9 years ago by Michael R. Crusoe • 1.5k
12
votes
1
answer
2.2k
views
1
answer
Using the Directory type in Common Workflow Language
cwl written 2.9 years ago by Peter vH • 100 • updated 2.8 years ago by Michael R. Crusoe • 1.5k
2
votes
1
answer
1.1k
views
1
answer
CWL Argument Error
software error cwl written 2.8 years ago by StarCute • 110 • updated 2.6 years ago by karl.nordstrom • 90
4
votes
1
answer
1.2k
views
1
answer
How to plot workflow as image
cwl written 2.8 years ago by ngsbioinformatics • 30 • updated 2.4 years ago by Michael R. Crusoe • 1.5k
2
votes
2
answers
723
views
2
answers
CWL : default value and label for argument
common workflow language cwl written 2.7 years ago by sebastien.letort • 70
1
vote
0
answers
1.1k
views
0
answers
error: argument --reference is required
cwl written 2.7 years ago by giuseppacefalu • 0 • updated 2.7 years ago by RamRS ♦ 21k
2
votes
2
answers
644
views
2
answers
rerunning workflows with --cachedir sometimes repeats steps despite no changes to input
common workflow language cachedir cwl written 2.7 years ago by c.ravarani • 0
1
vote
1
answer
822
views
1
answer
make paths variable in .cwl workflows and corresponding -job files
common workflow language cwl written 2.7 years ago by c.ravarani • 0 • updated 2.7 years ago by Michael R. Crusoe • 1.5k
0
votes
1
answer
503
views
1
answer
Runtime parameters request: average read/write speed & average total run time
common workflow language cwl written 2.7 years ago by tantrev • 20
1
vote
1
answer
2.1k
views
1
answer
Create writable directory inside container before executing baseCommand. How to properly use InitialWorkDirRequirement
common workflow language cwl written 2.7 years ago by misha.kotliar • 10 • updated 2.6 years ago by Michael R. Crusoe • 1.5k
0
votes
1
answer
1.2k
views
1
answer
Getting started with CWL: Unrecognized version v1.0?
cwl written 2.7 years ago by sb10 • 40 • updated 6 months ago by Biostar ♦♦ 20
0
votes
0
answers
998
views
0
answers
cwl for a Phyloseq command
R cwl phyloseq written 2.7 years ago by Shakuntala Baichoo • 0
4
votes
1
answer
1.1k
views
1
answer
How to convert File to array of File? Type mismatch between source and sink, File to array
common workflow language cwl written 2.6 years ago by karl.nordstrom • 90 • updated 2.6 years ago by Michael R. Crusoe • 1.5k
7
votes
2
answers
1.6k
views
2
answers
CWL: how to set default values
common workflow language cwl written 2.6 years ago by bird77 • 30 • updated 2.5 years ago by denis.yuen • 90
1
vote
1
answer
753
views
1
answer
Failing to use $mixin to include "global" settings
common workflow language cwl written 2.6 years ago by karl.nordstrom • 90 • updated 2.6 years ago by Michael R. Crusoe • 1.5k
1
vote
1
answer
1.2k
views
1
answer
How to get created directories out of CWL tmp path
common workflow language cwl written 2.6 years ago by DT • 20 • updated 2.6 years ago by Michael R. Crusoe • 1.5k
7
votes
1
answer
1.2k
views
5 follow
1
answer
Simple(?) workflow, can't sort out what output goes where
cwl written 2.5 years ago by starkruzr • 20 • updated 2.1 years ago by Biostar ♦♦ 20
0
votes
0
answers
948
views
0
answers
hard copies instead of symlinks from InitialWorkDirRequirement ? - SOLVED
cwl written 2.5 years ago by jeltje.van.baren • 80
12
votes
1
answer
2.4k
views
6 follow
1
answer
CWL: reading files within an expressionTool
common-workflow-language cwl javascript written 2.5 years ago by karl.nordstrom • 90 • updated 2.5 years ago by alaindomissy • 160
3
votes
1
answer
743
views
1
answer
Reference implementation rejects step without inputs
common workflow language cwl written 2.5 years ago by unduthegun • 0
1
vote
3
answers
920
views
3
answers
cwl for h3abionet16s pipeline failing with non-docker option
cwl written 2.5 years ago by Shakuntala Baichoo • 0 • updated 7 months ago by Biostar ♦♦ 20
0
votes
1
answer
698
views
1
answer
CWL Release 1.0: Why having both default and valueFrom fields on WorkflowStepInput?
cwl written 2.5 years ago by Boris Burkov • 0 • updated 2.5 years ago by Michael R. Crusoe • 1.5k
9
votes
2
answers
722
views
6 follow
2
answers
Advice on rendering a config file
cwl initialworkdirrequirement written 2.5 years ago by psaffrey • 20 • updated 2.5 years ago by Michael R. Crusoe • 1.5k
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