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CWL: Min and max for tool input values (float,int)
cwl written 8 weeks ago by fjrmoreews • 0 • updated 5 days ago by Michael R. Crusoe • 1.8k
7
votes
2
answers
500
views
2
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Parse CWL to graph data structure or database?
neo4j cwl written 11 months ago by mcpherson • 40 • updated 6 weeks ago by ngsbioinformatics • 30
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3
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2.1k
views
3
answers
CWL: default values for custom types in a workflow
cwl written 2.9 years ago by thomas.e • 110 • updated 10 weeks ago by Biostar ♦♦ 20
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0
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264
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0
answers
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
thanks news cwl written 7 months ago by Michael R. Crusoe • 1.8k • updated 11 weeks ago by ATpoint ♦ 35k
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95
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0
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CWL - glob an array of output files based on a single input string
cwl written 11 weeks ago by drkennetz • 480
17
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2
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1.1k
views
5 follow
2
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CommandLineTool doesn't finish
cwl written 24 months ago by Tom • 520
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0
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363
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0
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Tutorial: How to run CWL with Nextflow
tutorial cwl nextflow written 3 months ago by steve • 2.5k
2
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2
answers
450
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2
answers
Can I use output eval with CWL to create the list of output files (i.e. replace the glob results)?
common workflow language cwl written 13 months ago by mavrommatis.konstantinos • 10 • updated 3 months ago by michael.franklin • 10
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1.1k
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1
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make paths variable in .cwl workflows and corresponding -job files
common workflow language cwl written 3.7 years ago by c.ravarani • 0 • updated 6 months ago by Biostar ♦♦ 20
1
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1
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355
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1
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ask for a CWL script to perform FASTQC to get quality control files, then use the folder of having these quality control files as input for MultiQC
cwl written 7 months ago by aimin.at.work • 0 • updated 7 months ago by Phil Ewels • 520
2
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1
answer
434
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1
answer
bedtools sort -faidx in CWL
bedtools cwl sort written 12 months ago by dami • 10 • updated 7 months ago by kaushik.ghose • 70
4
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2
answers
571
views
2
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CWL NO JSON object could be decoded
json cwl written 15 months ago by yifan wang • 20 • updated 7 months ago by Biostar ♦♦ 20
6
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2
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387
views
2
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CWL: Using the "EnvVarRequirement" to pass an environment variable to a script
common workflow language cwl written 7 months ago by skanwal • 50
2
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1
answer
275
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1
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CWL: Does cwltool support to download both input file and its secondaryFiles remotely?
workflow cwl written 8 months ago by Linda • 0 • updated 7 months ago by Michael R. Crusoe • 1.8k
5
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1
answer
294
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1
answer
secondaryFiles where nameroot differs
cwl written 8 months ago by Peter vH • 130 • updated 8 months ago by Michael R. Crusoe • 1.8k
4
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1
answer
248
views
1
answer
Missing CWL files in a Directory when passed as input
cwl written 9 months ago by asha • 20 • updated 8 months ago by Tom • 520
2
votes
0
answers
410
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0
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Job: Seeking bioinformaticians and data engineers for product research study
aws cwl workflows rna-seq job written 8 months ago by duminda.aluthgamage • 30
2
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1
answer
677
views
1
answer
cwl: unrecognized extension field, $schemas section
cwl written 2.4 years ago by ninsch3000 • 10 • updated 9 months ago by Biostar ♦♦ 20
13
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1
answer
360
views
5 follow
1
answer
Input specific output filenames
cwl rna-seq written 9 months ago by nmaki • 30 • updated 9 months ago by Tom • 520
4
votes
2
answers
350
views
2
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how do I default to /dev/null in CommandLineTool
cwl written 9 months ago by Azat Badretdin • 0 • updated 9 months ago by Michael R. Crusoe • 1.8k
7
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3
answers
1.1k
views
3
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Is there a schema for CWL inputs/job files?
cwl written 12 months ago by karl.sebby • 70
3
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0
answers
207
views
0
answers
common workflow language
cwl written 9 months ago by kalwad.piyusha7 • 10
3
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1
answer
302
views
1
answer
Change execution directory before running a tool (CWL)
cwl written 9 months ago by andreas.bleuler • 20 • updated 9 months ago by Tom • 520
2
votes
1
answer
538
views
1
answer
Save CURL output to file
cwl written 9 months ago by amnoyman • 0 • updated 9 months ago by inutano • 30
3
votes
2
answers
286
views
2
answers
More examples of parser_v1.0.py usage?
python cwl parser written 10 months ago by mcpherson • 40
9
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2
answers
482
views
2
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Add an item from input to an output array in CWL
cwl written 10 months ago by drkennetz • 480 • updated 10 months ago by Michael R. Crusoe • 1.8k
3
votes
2
answers
365
views
2
answers
CWL: Array of strings in workflow
cwl written 10 months ago by mkher • 50
0
votes
1
answer
261
views
1
answer
Strict validation for input and inputBinding values with same position?
cwl validation written 10 months ago by brunodepaulak • 0 • updated 10 months ago by Tom • 520
1
vote
1
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349
views
1
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cwl glob all the output files in a directory
cwl written 10 months ago by lizhichao • 80 • updated 10 months ago by Michael R. Crusoe • 1.8k
6
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2
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1.4k
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2
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samtools sort: failed to create temporary file: No space left on device
samtools cwl written 10 months ago by lizhichao • 80 • updated 10 months ago by ATpoint ♦ 35k
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