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26
votes
5
answers
4.6k
views
8 follow
5
answers
Minimal CWL (Common Workflow Language) workflow from Makefile
cwl makefile written 4.8 years ago by Pierre Lindenbaum128k • updated 4.7 years ago by sahiilseth30
1
vote
1
answer
4.2k
views
1
answer
12
votes
1
answer
3.2k
views
1
answer
Using the Directory type in Common Workflow Language
cwl written 3.8 years ago by Peter vH130 • updated 3.7 years ago by Michael R. Crusoe1.8k
9
votes
2
answers
3.1k
views
5 follow
2
answers
CWL: How do I use pipes?
cwl written 3.4 years ago by mkher50 • updated 3.3 years ago by karl.sebby70
12
votes
1
answer
3.1k
views
6 follow
1
answer
CWL: reading files within an expressionTool
common-workflow-language cwl javascript written 3.5 years ago by karl.nordstrom90 • updated 3.5 years ago by alaindomissy160
1
vote
1
answer
2.9k
views
1
answer
5
votes
2
answers
2.6k
views
2
answers
CWL: Setting output directories for steps in a workflow
cwl written 3.2 years ago by Peter Humburg50 • updated 3.2 years ago by peter.amstutz300
2
votes
1
answer
2.6k
views
1
answer
4
votes
1
answer
2.4k
views
1
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Example cwl workflow (for v1.0)?
cwl written 3.8 years ago by Peter vH130 • updated 3.8 years ago by Michael R. Crusoe1.8k
3
votes
2
answers
2.4k
views
2
answers
CWL: How to refer to input or scattered value of a step
cwl written 3.3 years ago by mkher50 • updated 16 months ago by jshelton0
3
votes
1
answer
2.3k
views
1
answer
8
votes
1
answer
2.2k
views
1
answer
CWL: Loops and if conditionals
loops cwl written 3.1 years ago by kevin.o.oluoch70 • updated 3.1 years ago by Michael R. Crusoe1.8k
7
votes
2
answers
2.2k
views
2
answers
CWL: how to set default values
common workflow language cwl written 3.5 years ago by bird7750 • updated 3.4 years ago by denis.yuen90
3
votes
3
answers
2.0k
views
3
answers
CWL: default values for custom types in a workflow
cwl written 2.9 years ago by thomas.e110 • updated 9 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
2.0k
views
1
answer
CWL: array of files as an input
cwl written 2.2 years ago by djarecka0 • updated 2.2 years ago by ionox0360
3
votes
1
answer
2.0k
views
1
answer
CWL: combine two arrays as workflow step input
cwl written 2.9 years ago by well30970 • updated 2.9 years ago by Michael R. Crusoe1.8k
2
votes
2
answers
2.0k
views
2
answers
What is the recommended way to debug JavaScript in CWL?
cwl written 2.2 years ago by ionox0360 • updated 2.1 years ago by bogdan.gavrilovic230
1
vote
2
answers
1.9k
views
2
answers
1
vote
0
answers
1.9k
views
0
answers
3
votes
1
answer
1.8k
views
1
answer
CWL passing secondary files in a workflow
cwl written 23 months ago by ttom210 • updated 23 months ago by biokcb170
7
votes
1
answer
1.8k
views
1
answer
CWL: word counting
common workflow language cwl written 2.9 years ago by gultagr10 • updated 2.6 years ago by Michael R. Crusoe1.8k
2
votes
1
answer
1.8k
views
1
answer
CWL: SLurm Job Sheduler
slurm cwl written 3.0 years ago by kevin.o.oluoch70 • updated 12 months ago by Biostar ♦♦ 20
3
votes
1
answer
1.8k
views
1
answer
3
votes
2
answers
1.7k
views
2
answers
3
votes
3
answers
1.7k
views
3
answers
cwl: how to add optional input as one element or as array of elements ?
cwl written 2.9 years ago by liuxf0930 • updated 2.9 years ago by thomas.e110
3
votes
1
answer
1.7k
views
1
answer
CWL bwa create index to bwa mem alignment workflow
common workflow language cwl written 2.8 years ago by Biowoogles20 • updated 2.7 years ago by well30970
0
votes
1
answer
1.6k
views
1
answer
Split up record input when using scatter/gather
scatter/gather cwl written 3.4 years ago by psaffrey20 • updated 3.2 years ago by Michael R. Crusoe1.8k
2
votes
1
answer
1.6k
views
1
answer
fail to open file - bwa mem using CWL
bwa-mem cwl written 3.1 years ago by skanwal50 • updated 3.1 years ago by solomon.shorser20
3
votes
1
answer
1.6k
views
1
answer
cwltool SGE support for CWL parallel tasks
toil cwl sge written 3.1 years ago by Stefano Berri4.1k • updated 2.9 years ago by Biostar ♦♦ 20
4
votes
3
answers
1.6k
views
3
answers
Converting stdout (File) to string
cwl written 2.5 years ago by eduardo10 • updated 2.5 years ago by Michael R. Crusoe1.8k
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