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Looking for Recommendations: whole Adult male Danio rerio RNAseq data

sra daniorerio mapping rna-seq written 15 months ago by jaqx008 • 70

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How to (and where) download Zebrafish Reference Genome (other than Ensembl or USCS)?

genome fasta zebrafish reference daniorerio written 20 months ago by realnewbie • 20 • updated 20 months ago by WouterDeCoster ♦ 43k

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Germany, just now
France/Nantes/Institut du Thorax - INSERM UMR1087, 1 minute ago
Philadelphia, PA, 2 minutes ago
Korea, 7 minutes ago

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Teacher to genomax ♦ 83k
Teacher to genomax ♦ 83k
Scholar to swbarnes2 ♦ 7.8k
Scholar to ATpoint ♦ 34k
Epic Question to anasofiamoreira94 • 70
Popular Question to krushnach80 • 740

Recent Replies

C: Using wildcards to accept paired-end reads from Snakemake by Jeremy Leipzig ♦ 19k
`samples_dict[sample]`
C: Using wildcards to accept paired-end reads from Snakemake by moldach686 • 30
A rose by any other name `samples_set = dict(zip(sample_names, sample_locations))` So does the ...
C: DEXSeq aggregates two different genes together by rohitsatyam102 • 90
Check if you by mistake copied the bin numbers present after the **":"** something like this:- ...
C: Using wildcards to accept paired-end reads from Snakemake by Jeremy Leipzig ♦ 19k
i don't see you using a `samples_dict`
C: SNP array CNV calling for Cancer tissue (.CEL files) by Kevin Blighe ♦ 59k
Related answer: https://www.biostars.org/p/440871/#440880
A: What is the best pipeline to analyze affymetrix snp 6.0 array in 2020? by Kevin Blighe ♦ 59k
Hey, my own doctoral degree was based on samples profiled with this array. Indeed, many tools ha...
C: Using wildcards to accept paired-end reads from Snakemake by moldach686 • 30
Thanks Jeremy, I think there is some progress snow: >>> import os >>>...
C: What Are The Most Common Stupid Mistakes In Bioinformatics? by RamRS ♦ 27k
This is literally what brentp's comment at the top says. I'm deleting this post now.
C: CNA calling using Affymetrix SNP Array 6.0 by Kevin Blighe ♦ 59k
Could be related to tumour heterogeneity and also the probe positioning on the array - indeed.
A: Risk score stratification with k-means by Mensur Dlakic • 5.4k
A general answer to your question is yes. In practice, it depends on how many features (clinical ...
A: some questions about edirect by genomax ♦ 83k
You have a bioproject ID so you ideally should do the following to get the sequences you need: ...
A: Discordance HGVS name of variant between annovar annotation and ClinVar by Jeremy Leipzig ♦ 19k
These discrepancies are concerning. IMHO VEP is the best at HGVS, better than Annovar. Mutalyzer...

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