data error Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answers

1.4k

views

answers

TCGA PRAD Biochemical Recurrence Data Problem

prad data error xena browser tcga written 3.3 years ago by Andy Lee • 10 • updated 2.1 years ago by Yijun Tian • 20

Recent Votes

Recent Locations • All »

Belgium, 1 minute ago
United Kingdom, 1 minute ago
USA, 5 minutes ago
United States, 6 minutes ago

Recent Awards • All »

Scholar to lieven.sterck ♦ 9.5k
Teacher to Alex Reynolds ♦ 31k
Appreciated to Mensur Dlakic • 8.3k
Commentator to Mensur Dlakic • 8.3k
Autobiographer to Content Writing Company in USA • 0
Scholar to Mensur Dlakic • 8.3k

Recent Replies

C: How to use samtools faidx by GenoMax ♦ 95k
> order to extract and align the hits from my blast. Align to a reference? To each other like...
C: Creating a non-coding RNA index for STAR by plberry • 10
Thanks for the tip on the BBMap suite, that looks very promising.
C: Creating a non-coding RNA index for STAR by plberry • 10
I wanted to use STAR because that's what I'm going to be using for more downstream analysis of re...
A: Creating a non-coding RNA index for STAR by GenoMax ♦ 95k
> My end goal is to remove all reads in the sequencing file that map to > ncRNAs In that c...
C: Creating a non-coding RNA index for STAR by plberry • 10
The FASTA files do not have any chromosomes on them, just `>ENST00000473358.1|ENSG00000243485....
C: Creating a non-coding RNA index for STAR by GenoMax ♦ 95k
`STAR` should have no advantage over other aligners for ncRNA. You may want to try a simpler alig...
C: PEPATAC error: ConnectionResetError: [Errno 104] Connection reset by peer by karl.stamm ♦ 3.9k
That's a network connection problem. Talk to your computer administrators or network engineers. ...
C: Creating a non-coding RNA index for STAR by Pierre Lindenbaum ♦ 133k
> Most likely cause is the difference in chromosome naming between GTF and FASTA file. did y...
C: How to use samtools faidx by Pierre Lindenbaum ♦ 133k
> then use the samtools faidx command in order to extract and align the hits from my blast th...
C: Message Error : Blastdbcmd by florian.grosmaire • 0
Thank you very much !
C: When a duplicated BUSCOs value is too high? Reasons and how to improve it by resug • 0
Thanks! It's good to hear this. Are not BUSCOs expected to be single copy?
C: Message Error : Blastdbcmd by GenoMax ♦ 95k
Use `-entry_batch` parameter with an input file with sequence ID.

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1334 users visited in the last hour