datasets Posts

C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by vkkodali • 1.5k
You are correct, RefSeq release will not include the other proteins. I have myself never tested ...
C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by protein_guru • 0
Thanks for your reply. It appears that the RefSeq chunked DB won't necessarily contain all the se...
C: Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redu by vkkodali • 1.5k
If you can run your `esearch` query again, you can pipe it to `efetch -format acc` to get the acc...
C: VCF filtering by depth by ja4123 • 0
How to filter AF in vcf file with that way? There is a KeyError.
C: Where does Prokka take EC numbers from? by Mensur Dlakic • 2.4k
The meaning of EC numbers is explained at [**ExPASy**][1], specifically in [**this file**][2]. Pr...
A: GENCODE and untranslated regions by natasha.sernova • 3.7k
This post looks helpful. https://www.biostars.org/p/48502/
C: Seurat QC Metrics For Each Cluster and Cluster Composition by jared.andrews07 • 4.1k
What do you mean by "how much each cluster contributes to the total amount of cells"? Just the pe...
A: Seurat QC Metrics For Each Cluster and Cluster Composition by igor ♦ 8.9k
All of the QC metrics and cluster assignments are stored in `seurat_obj@meta.data`, which is a st...
A: How to modify the nodes features in Gradient1 style in Cytoscape? by xanderpico • 170
As you have already discovered, there are a few different ways to get the 3D style, each with the...
C: Correlation of two ChIP-seq signals? by i.sudbery ♦ 6.3k
What about exons/introns - is some correlation coming from the signal being stronger in exons?
C: How to detect CNV with panel sequencing? by lffu_0032 • 40
For germline cnv calling by using capture panel data, i recommend CoNVaDING
A: Could any of you help me to explain the steps in creating backbone network or th by xanderpico • 170
I don't know precisely what you mean by "backbone", but you can readily measer degree, betweeenne...

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