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15
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error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 14 months ago by Lila M 810 • updated 5 days ago by Biostar ♦♦ 20
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148
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2
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bamCompare output values ChIP/input normalization
deeptools chip-seq bamcompare normalization written 13 days ago by marco0 • updated 12 days ago by colin.kern900
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1
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121
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Chip-Seq input normalization with deeptools
deeptools chip-seq written 14 days ago by srhic0 • updated 14 days ago by jared.andrews075.3k
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676
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deepTools white dots on black background
deeptools written 3.0 years ago by Kasthuri260 • updated 16 days ago by Biostar ♦♦ 20
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137
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2
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deeptools plotProfile plots inconsistently
plotprofile deeptools plotheatmap written 4 weeks ago by Ekalavya10 • updated 4 weeks ago by colin.kern900
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10
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3
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Normalize BigWig's for # of reads in peaks and sequencing depth
atacseq deeptools written 8 weeks ago by Zeel0 • updated 8 weeks ago by ATpoint31k
3
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2
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150
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2
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deepTools/Galaxy Optimize K-Means Clusters - Elbow Plot
deeptools galaxy chip-seq sequencing written 3 months ago by Ready2Rapture20 • updated 12 weeks ago by Mensur Dlakic4.0k
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72 follow
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 4.1 years ago by Sinji3.0k • updated 3 months ago by Ă–mer An200
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6 follow
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6 follow
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Plotting chip signal at TSSs with deeptools
deeptools chip-seq computematrix written 7 months ago by srhic0 • updated 7 months ago by Devon Ryan94k
2
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289
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Draw coverage plot from bed file
deeptools coverage bed file written 7 months ago by ben.kunfang10 • updated 7 months ago by Alex Reynolds29k
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 2.7 years ago by ildem50 • updated 8 months ago by Biostar ♦♦ 20
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2
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 4.2 years ago by Sam90 • updated 10 months ago by Simply Bioinformatics170
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2
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421
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6 follow
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5
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1
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473
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Issue running deeptools on cluster via snakemake
deeptools snakemake written 10 months ago by camerond150 • updated 10 months ago by russhh5.2k
1
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Deeptools for ChIP-Seq
deeptools chip-seq heatmap written 11 months ago by yugen3010
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show the names of the genes on the Y axis on the heatmap Deeptools
deeptools chip-seq rna-seq written 3.5 years ago by Bioiris0 • updated 10 months ago by yugen3010
0
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Chip Seq analysis for H3K27me3,H3K27ac and K4me1 enrichment
deeptools chip-seq written 11 months ago by Researcher50 • updated 11 months ago by jared.andrews075.3k
0
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bamCompare the result if 0
deeptools chip-seq bamcompare written 12 months ago by HI0 • updated 12 months ago by Devon Ryan94k
8
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469
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1
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How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 12 months ago by star230 • updated 12 months ago by Biostar ♦♦ 20
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