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<prev • 58 results • page 1 of 2 • next >
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Installing and running pyGenomeTracks
pygenometracks deeptools hicmatrix hicexplorer written 29 days ago by rbronste • 200 • updated 8 days ago by Biostar ♦♦ 20
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73
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Deeptools plotCorrelation function bug?
deeptools plotcorrelation written 25 days ago by Zee_S • 20
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2
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2
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ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
deeptools chip-seq written 16 months ago by salamandra • 170 • updated 8 weeks ago by RamRS ♦ 19k
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214
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deepTools2: compute matrix error
software error deeptools galaxy written 11 weeks ago by dabates06 • 0 • updated 11 weeks ago by Devon Ryan ♦ 86k
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1
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106
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1
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what scale does multiBigwigSummary use for score
multibigwigsummary deeptools score written 11 weeks ago by Lila M • 390 • updated 11 weeks ago by Devon Ryan ♦ 86k
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1
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197
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1
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Different bigwig file sizes between BedgraphToBigwig and bamCoverage
bamcoverage ucsc bigwig deeptools bedgraphtobigwig written 12 weeks ago by m93 • 100
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1
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deeptools bamcompare/bamcoverage merging bins?
deeptools chip-seq written 3 months ago by gewa • 0 • updated 3 months ago by ATpoint ♦ 9.2k
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1
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166
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1
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deepTools - change line colors in profile plots above a heatmap
deeptools profile plot heatmap written 4 months ago by mbk0asis • 380 • updated 4 months ago by Devon Ryan ♦ 86k
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373
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1
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Deeptools plotHeatmap: too much black! missing data assigned incorrectly
plotheatmap deeptools missing data computematrix written 4 months ago by David K • 0 • updated 4 months ago by Devon Ryan ♦ 86k
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2
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222
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deepTools plot profile problem
deeptools title profile written 5 months ago by elisheva • 70 • updated 5 months ago by Devon Ryan ♦ 86k
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1
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278
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1
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Y axis PlotHeatMap Deeptools
deeptools written 5 months ago by fusion.slope • 170 • updated 5 months ago by Devon Ryan ♦ 86k
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1
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271
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1
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Plotting multiple signal files against a single genomic region
deeptools chip-seq rna-seq written 8 months ago by keller.mckowen • 10 • updated 6 months ago by Alex Reynolds ♦ 26k
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Can't upgrade deeptools 2.5.7 to 3.0 via conda 4.5.0 on Debian Jessie
deeptools written 7 months ago by ZheFrench • 140 • updated 7 months ago by Devon Ryan ♦ 86k
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Deeptools - ComputeMatrix: Why does 'referencePoint center' gives the same heatmap as 'referencePoint TSS'
deeptools chip-seq sequencing written 8 months ago by salamandra • 170
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509
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ChIP-seq heatmap: Which MACS2 output file should we give as input into deeptools computeMatrix?
deeptools macs2 chip-seq computematrix rna-seq written 8 months ago by salamandra • 170
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Comparison of bamCoverage log2 ratios in deeptools
deeptools chip-seq correlation written 8 months ago by ATpoint ♦ 9.2k • updated 8 months ago by Devon Ryan ♦ 86k
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237
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Estimate Fragment Size from Single End ChipSeq with (pysam, htseq lib or deeptools API)
htseq deeptools pysam written 9 months ago by ZheFrench • 140
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61 follow
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.7 years ago by Sinji • 2.7k • updated 10 months ago by chiefcat • 70
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[ChIP-seq. signal plot] How to align the based line of different samples?
deeptools chip-seq normalization written 10 months ago by chiefcat • 70 • updated 10 months ago by Dave Gerrard • 190
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[ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal profile plotting?
deeptools biological replicates chip-seq written 10 months ago by chiefcat • 70 • updated 10 months ago by Devon Ryan ♦ 86k
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Help with DeepTools
software error deeptools chip-seq written 10 months ago by landrjos • 10 • updated 10 months ago by genomax ♦ 58k
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1
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356
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1
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how to draw two different Y-axes with deeptools?
chh deeptools methylation written 11 months ago by edoardobertolini • 0 • updated 11 months ago by Devon Ryan ♦ 86k
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1
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1
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plotProfile (deepTools) generated a peak on gene body region
plotprofile deeptools written 11 months ago by mbk0asis • 380 • updated 11 months ago by Devon Ryan ♦ 86k
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5 follow
1
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deeptools PCA vs ChIPQC PCA
deeptools diffbind chipqc chipseq written 14 months ago by ZheFrench • 140 • updated 14 months ago by Devon Ryan ♦ 86k
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how to process spike-in with bamCoverage and plotHeatmap (with deeptools)
deeptools spike chip-seq normalization written 19 months ago by alessandro.pastore • 30
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1
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deepTools draw coverage for specific region
deeptools alignment bam written 16 months ago by Medhat ♦ 8.0k • updated 16 months ago by Devon Ryan ♦ 86k
2
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1
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1
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Extract further information from deepTools plotPCA
deeptools chip-seq written 16 months ago by Roman Hillje • 30
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648
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 16 months ago by ildem • 20
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510
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1
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deepTools - plotHeatmap, move colorbar to the bottom
deeptools heatmap written 17 months ago by rbronste • 200 • updated 17 months ago by Devon Ryan ♦ 86k
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456
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Filter for regions containing large stretches of missing data
plotheatmap deeptools missing data computematrix written 17 months ago by mmmmcandrew • 60 • updated 17 months ago by Alex Reynolds ♦ 26k
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