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<prev • 63 results • page 1 of 3 • next >
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How to deal with wig files separate bu watson and crick strand
deeptools groseq wig tssprofile written 9 hours ago by Lila M • 410
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138
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Deeptool ComputeGCBias causes fatal error
software error deeptools computegcbias sequencing written 29 days ago by mfro1505 • 0 • updated 29 days ago by RamRS ♦ 20k
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280
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1
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Installing and running pyGenomeTracks
pygenometracks deeptools hicmatrix hicexplorer written 3 months ago by rbronste • 230 • updated 5 weeks ago by wolffj.bioinf • 10
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158
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Using FeatureCounts for ChIP-seq normalised files?
deeptools chip-seq written 7 weeks ago by a.rex • 170 • updated 7 weeks ago by Devon Ryan ♦ 87k
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Can I use deeptools to calculate nucleosome positions?
deeptools atac written 7 weeks ago by a.rex • 170
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Explaining PCA plots made from BigWig coverage files in DeepTools
deeptools atac-seq written 8 weeks ago by a.rex • 170 • updated 8 weeks ago by RamRS ♦ 20k
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126
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Deeptools plotCorrelation function bug?
deeptools plotcorrelation written 12 weeks ago by Zee_S • 20
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ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
deeptools chip-seq written 19 months ago by salamandra • 180 • updated 4 months ago by RamRS ♦ 20k
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288
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deepTools2: compute matrix error
software error deeptools galaxy written 4 months ago by dabates06 • 0 • updated 4 months ago by Devon Ryan ♦ 87k
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144
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what scale does multiBigwigSummary use for score
multibigwigsummary deeptools score written 4 months ago by Lila M • 410 • updated 4 months ago by Devon Ryan ♦ 87k
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319
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Different bigwig file sizes between BedgraphToBigwig and bamCoverage
bamcoverage ucsc bigwig deeptools bedgraphtobigwig written 5 months ago by m93 • 130
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425
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deeptools bamcompare/bamcoverage merging bins?
deeptools chip-seq written 6 months ago by gewa • 0 • updated 6 months ago by ATpoint ♦ 12k
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234
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deepTools - change line colors in profile plots above a heatmap
deeptools profile plot heatmap written 6 months ago by mbk0asis • 390 • updated 6 months ago by Devon Ryan ♦ 87k
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Deeptools plotHeatmap: too much black! missing data assigned incorrectly
plotheatmap deeptools missing data computematrix written 6 months ago by David K • 0 • updated 6 months ago by Devon Ryan ♦ 87k
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deepTools plot profile problem
deeptools title profile written 7 months ago by elisheva • 70 • updated 7 months ago by Devon Ryan ♦ 87k
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346
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1
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Y axis PlotHeatMap Deeptools
deeptools written 7 months ago by fusion.slope • 200 • updated 7 months ago by Devon Ryan ♦ 87k
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326
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Plotting multiple signal files against a single genomic region
deeptools chip-seq rna-seq written 10 months ago by keller.mckowen • 10 • updated 9 months ago by Alex Reynolds ♦ 27k
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Can't upgrade deeptools 2.5.7 to 3.0 via conda 4.5.0 on Debian Jessie
deeptools written 9 months ago by ZheFrench • 160 • updated 9 months ago by Devon Ryan ♦ 87k
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Deeptools - ComputeMatrix: Why does 'referencePoint center' gives the same heatmap as 'referencePoint TSS'
deeptools chip-seq sequencing written 10 months ago by salamandra • 180
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ChIP-seq heatmap: Which MACS2 output file should we give as input into deeptools computeMatrix?
deeptools macs2 chip-seq computematrix rna-seq written 10 months ago by salamandra • 180
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Comparison of bamCoverage log2 ratios in deeptools
deeptools chip-seq correlation written 10 months ago by ATpoint ♦ 12k • updated 10 months ago by Devon Ryan ♦ 87k
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297
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Estimate Fragment Size from Single End ChipSeq with (pysam, htseq lib or deeptools API)
htseq deeptools pysam written 11 months ago by ZheFrench • 160
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.9 years ago by Sinji • 2.7k • updated 12 months ago by chiefcat • 70
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[ChIP-seq. signal plot] How to align the based line of different samples?
deeptools chip-seq normalization written 12 months ago by chiefcat • 70 • updated 12 months ago by Dave Gerrard • 190
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[ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal profile plotting?
deeptools biological replicates chip-seq written 12 months ago by chiefcat • 70 • updated 12 months ago by Devon Ryan ♦ 87k
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Help with DeepTools
software error deeptools chip-seq written 12 months ago by landrjos • 10 • updated 12 months ago by genomax ♦ 60k
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403
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1
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how to draw two different Y-axes with deeptools?
chh deeptools methylation written 13 months ago by edoardobertolini • 0 • updated 13 months ago by Devon Ryan ♦ 87k
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plotProfile (deepTools) generated a peak on gene body region
plotprofile deeptools written 13 months ago by mbk0asis • 390 • updated 13 months ago by Devon Ryan ♦ 87k
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5 follow
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deeptools PCA vs ChIPQC PCA
deeptools diffbind chipqc chipseq written 16 months ago by ZheFrench • 160 • updated 16 months ago by Devon Ryan ♦ 87k
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how to process spike-in with bamCoverage and plotHeatmap (with deeptools)
deeptools spike chip-seq normalization written 21 months ago by alessandro.pastore • 30
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