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3
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ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
deeptools chip-seq written 15 months ago by salamandra • 170 • updated 10 days ago by RamRS ♦ 17k
1
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1
answer
139
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1
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deepTools2: compute matrix error
software error deeptools galaxy written 28 days ago by dabates06 • 0 • updated 28 days ago by Devon Ryan ♦ 84k
2
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1
answer
68
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1
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what scale does multiBigwigSummary use for score
multibigwigsummary deeptools score written 4 weeks ago by Lila M • 390 • updated 4 weeks ago by Devon Ryan ♦ 84k
3
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1
answer
128
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1
answer
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
bamcoverage ucsc bigwig deeptools bedgraphtobigwig written 5 weeks ago by m93 • 90
1
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1
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248
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1
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deeptools bamcompare/bamcoverage merging bins?
deeptools chip-seq written 9 weeks ago by gewa • 0 • updated 9 weeks ago by ATpoint ♦ 7.6k
2
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1
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123
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1
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deepTools - change line colors in profile plots above a heatmap
deeptools profile plot heatmap written 11 weeks ago by mbk0asis • 380 • updated 11 weeks ago by Devon Ryan ♦ 84k
2
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1
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294
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1
answer
Deeptools plotHeatmap: too much black! missing data assigned incorrectly
plotheatmap deeptools missing data computematrix written 3 months ago by David K • 0 • updated 3 months ago by Devon Ryan ♦ 84k
5
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2
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173
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2
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deepTools plot profile problem
deeptools title profile written 3 months ago by elisheva • 70 • updated 3 months ago by Devon Ryan ♦ 84k
2
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1
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213
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1
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Y axis PlotHeatMap Deeptools
deeptools written 3 months ago by fusion.slope • 150 • updated 3 months ago by Devon Ryan ♦ 84k
1
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1
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235
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1
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Plotting multiple signal files against a single genomic region
deeptools chip-seq rna-seq written 6 months ago by keller.mckowen • 10 • updated 5 months ago by Alex Reynolds ♦ 25k
1
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1
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290
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1
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Can't upgrade deeptools 2.5.7 to 3.0 via conda 4.5.0 on Debian Jessie
deeptools written 5 months ago by ZheFrench • 140 • updated 5 months ago by Devon Ryan ♦ 84k
1
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0
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413
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0
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Deeptools - ComputeMatrix: Why does 'referencePoint center' gives the same heatmap as 'referencePoint TSS'
deeptools chip-seq sequencing written 6 months ago by salamandra • 170
0
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0
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438
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0
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ChIP-seq heatmap: Which MACS2 output file should we give as input into deeptools computeMatrix?
deeptools macs2 chip-seq computematrix rna-seq written 6 months ago by salamandra • 170
2
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1
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330
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1
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Comparison of bamCoverage log2 ratios in deeptools
deeptools chip-seq correlation written 7 months ago by ATpoint ♦ 7.6k • updated 7 months ago by Devon Ryan ♦ 84k
0
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0
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188
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0
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Estimate Fragment Size from Single End ChipSeq with (pysam, htseq lib or deeptools API)
htseq deeptools pysam written 8 months ago by ZheFrench • 140
97
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7
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17k
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59 follow
7
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 2.6 years ago by Sinji • 2.7k • updated 8 months ago by chiefcat • 70
1
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2
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406
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2
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[ChIP-seq. signal plot] How to align the based line of different samples?
deeptools chip-seq normalization written 8 months ago by chiefcat • 70 • updated 8 months ago by Dave Gerrard • 190
2
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1
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718
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1
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[ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal profile plotting?
deeptools biological replicates chip-seq written 8 months ago by chiefcat • 70 • updated 8 months ago by Devon Ryan ♦ 84k
3
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0
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664
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0
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Help with DeepTools
software error deeptools chip-seq written 8 months ago by landrjos • 10 • updated 8 months ago by genomax ♦ 56k
2
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1
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318
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1
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how to draw two different Y-axes with deeptools?
chh deeptools methylation written 9 months ago by edoardobertolini • 0 • updated 9 months ago by Devon Ryan ♦ 84k
0
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1
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785
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1
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plotProfile (deepTools) generated a peak on gene body region
plotprofile deeptools written 9 months ago by mbk0asis • 380 • updated 9 months ago by Devon Ryan ♦ 84k
6
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1
answer
750
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5 follow
1
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deeptools PCA vs ChIPQC PCA
deeptools diffbind chipqc chipseq written 13 months ago by ZheFrench • 140 • updated 13 months ago by Devon Ryan ♦ 84k
1
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0
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971
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0
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how to process spike-in with bamCoverage and plotHeatmap (with deeptools)
deeptools spike chip-seq normalization written 17 months ago by alessandro.pastore • 30
3
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1
answer
509
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1
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deepTools draw coverage for specific region
deeptools alignment bam written 14 months ago by Medhat ♦ 7.7k • updated 14 months ago by Devon Ryan ♦ 84k
2
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1
answer
711
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1
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Extract further information from deepTools plotPCA
deeptools chip-seq written 14 months ago by Roman Hillje • 30
1
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0
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593
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0
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 14 months ago by ildem • 20
3
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1
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490
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1
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deepTools - plotHeatmap, move colorbar to the bottom
deeptools heatmap written 15 months ago by rbronste • 170 • updated 15 months ago by Devon Ryan ♦ 84k
4
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2
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421
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2
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Filter for regions containing large stretches of missing data
plotheatmap deeptools missing data computematrix written 15 months ago by mmmmcandrew • 60 • updated 15 months ago by Alex Reynolds ♦ 25k
0
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2
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918
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2
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deeptools installation on MacBook
mac deeptools install written 18 months ago by BioDH • 0 • updated 16 months ago by inowkeren • 0
5
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1
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603
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6 follow
1
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Deeptools Sorting for score values
deeptools sorting heatmaps written 16 months ago by groupelmarwolf • 0 • updated 16 months ago by Devon Ryan ♦ 84k
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