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2
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1
answer
54
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1
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Deeptools plotHeatmap values
plotheatmap deeptools tables chip-seq written 1 day ago by saha.shagnik • 0 • updated 1 day ago by 2nelly • 260
5
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1
answer
87
views
1
answer
bamCoverage bin size for narrow and broad histone marks
deeptools chip-seq written 3 days ago by Marco • 20
0
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0
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59
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0
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Correlation heatmap for ChIP-seq data: Pearson or Spearman?
chip-seq correlation deeptools written 5 days ago by Marco • 20
0
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0
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59
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0
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MultiBigwigSummary of deepTools keeps on running for a long time
multibigwigsummary chip-seq deeptools ubuntu written 7 days ago by saha.shagnik • 0
1
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0
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42
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0
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Change sample order in plotHeatmap?
plotheatmap deeptools computematrix written 12 days ago by konsta.kukkonen • 0
4
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1
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476
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6 follow
1
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No space left on device error with deeptools bamCompare
software error deeptools picard terminal bash written 7 months ago by jennxyzhang • 0 • updated 24 days ago by Kevin Blighe ♦ 71k
1
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1
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153
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1
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What are those black lines in my heatmap?
deeptools heatmap written 5 weeks ago by grx0326 • 0 • updated 5 weeks ago by Devon Ryan ♦ 98k
0
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0
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115
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0
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deeptools plotHeatmap gives blurry pixelated image
atacseq deeptools plotheatmap computematrix written 5 weeks ago by Himanshu C • 0
0
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0
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156
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0
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Reads detected/"spill over" on introns after using bamCoverage function from deepTools
bamcoverage intron bigwig deeptools written 7 weeks ago by kdcastillo • 0 • updated 5 weeks ago by Biostar ♦♦ 20
1
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1
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1.3k
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1
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Deeptools ValueError: invalid literal for int() with base 10 error
deeptools chip-seq written 7 months ago by das2000sidd • 30 • updated 9 weeks ago by delonbest • 0
0
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0
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444
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0
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Understanding enrichment signal from TF ChIP-seq using phantompeakqualtools and plotFingerprint(deeptools)
deeptools quality control chip-seq written 10 weeks ago by ahnje770 • 0
2
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0
answers
213
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0
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Using Deeptool for profile plots
deeptools written 3 months ago by pixie@bioinfo • 1.4k
0
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1
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245
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1
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DeepTools plotProfile y axis units?
plotprofile deeptools plotheatmap written 3 months ago by mcsimenc • 10 • updated 3 months ago by Devon Ryan ♦ 98k
0
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0
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154
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0
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Chip Seq Enrichment Profile
deeptools chip-seq profile enrichment written 4 months ago by Mohammed • 0
3
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1
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268
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1
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Comparing input read subtracted ChIP-read profiles using Deeptools v3.4.3
deeptools written 5 months ago by Ian ♦ 5.7k
0
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1
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410
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1
answer
Deeptools installation fails (Could not find a version that satisfies the requirement matplotlib>=3.1.0)
deeptools python3 ubuntu written 5 months ago by DBScan • 20
2
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0
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262
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0
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Deeptools correlation plot: between RNAseq and H3K27ac ChIPseq
deeptools h3k27ac chip-seq rna-seq correlation written 5 months ago by aditi225 • 0 • updated 5 months ago by GenoMax ♦ 96k
0
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0
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162
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0
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Deeptools plotCoverage and bamPEFragmentSize change axes
deeptools next-gen coverage snp sequencing written 5 months ago by QPaps04 • 30
0
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0
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367
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0
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help with segmentation fault deeptools
software error deeptools chip-seq written 6 months ago by campbell.1933 • 0
1
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1
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466
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1
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Getting different values from deeptools bamCoverage CPM normalization, and from manually normalizing using samtools mpileup
deeptools bamcoverage atac-seq normalization cpm written 6 months ago by rjd254 • 0 • updated 6 months ago by ATpoint ♦ 46k
0
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0
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572
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0
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deeptools computeMatrix reference-point, want to plot 1kb before TSS and 1kb after TES then use plotHeatmap
software error deeptools chip-seq written 8 months ago by jennxyzhang • 0 • updated 6 months ago by Biostar ♦♦ 20
6
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1
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354
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1
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deepTools NPZ to PCA plot with modifications
deeptools plotpca written 7 months ago by gnmcsbnfrmtcsclb • 30 • updated 6 months ago by Devon Ryan ♦ 98k
3
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1
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3.1k
views
1
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Help with DeepTools
software error deeptools chip-seq written 3.2 years ago by landrjos • 20 • updated 6 months ago by kennyday • 0
0
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0
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410
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0
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Spike-in normalization with Cut&Tag data
cutandtag deeptools chip-seq normalization written 6 months ago by hina.abbas.bandukwala • 0
5
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2
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527
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5 follow
2
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TSS metaprofile using Deeptools
gtf deeptools computematrix metaprofile written 7 months ago by mickey_95 • 30 • updated 7 months ago by zhuobaowen • 10
8
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1
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359
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6 follow
1
answer
SizeFactors for BAM normalization
deeptools deseq2 sizefactors bamcoverage written 7 months ago by Anand Rao • 350 • updated 7 months ago by Devon Ryan ♦ 98k
2
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1
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1.5k
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1
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Comparison of bamCoverage log2 ratios in deeptools
deeptools chip-seq correlation written 3.0 years ago by ATpoint ♦ 46k • updated 8 months ago by Biostar ♦♦ 20
2
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1
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166
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1
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deeptools computeGCbias: what are the columns in the GCbiasFrequenciesFile?
deeptools gcbias computegcbias correctgcbias written 8 months ago by tanagholattorobche • 0 • updated 8 months ago by Devon Ryan ♦ 98k
11
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3
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411
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5 follow
3
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interpreting GC-bias compute and correct results from DeepTools
deeptools gc-bias written 8 months ago by Anand Rao • 350
0
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0
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201
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0
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Cluster by logfc over H3K43me3 peak region
deeptools chip-seq written 8 months ago by das2000sidd • 30
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