Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: deeptools • reset
or   Classic search
<prev • 80 results • page 1 of 3 • next >
3
votes
2
answers
101
views
6 follow
2
answers
Plot read density across a normalized gene model for its each exon/intron length
deeptools next-gen chip-seq R python written 2 days ago by kashiff007 • 130 • updated 2 days ago by benformatics • 1.2k
1
vote
1
answer
553
views
1
answer
Deeptools error - Solving environment: failed with initial frozen solve
deeptools atac-seq python error written 5 weeks ago by dydy_cristina • 0 • updated 5 weeks ago by yztxwd • 230
2
votes
1
answer
156
views
1
answer
computeMatrix bed format files
deeptools chip-seq written 8 weeks ago by Morris_Chair • 150
2
votes
0
answers
123
views
0
answers
Is there a way to get multiBigwigSummary with 1-based coordinates instead of 0-based?
deeptools multibigwigsummary written 10 weeks ago by Zee_S • 50
0
votes
0
answers
89
views
0
answers
Representing several BAM files into one?
deeptools bam bamcompare written 10 weeks ago by raquelgarza95 • 50
4
votes
2
answers
929
views
6 follow
2
answers
[ChIP-seq. signal plot] How to align the based line of different samples?
deeptools chip-seq normalization written 23 months ago by chiefcat • 130 • updated 12 weeks ago by ricardo3889 • 20
1
vote
1
answer
187
views
1
answer
Plotting chip signal at TSSs with deeptools
deeptools chip-seq computematrix written 3 months ago by srhic • 0 • updated 3 months ago by Devon Ryan ♦ 93k
110
votes
8
answers
26k
views
71 follow
8
answers
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 3.8 years ago by Sinji • 2.9k • updated 3 months ago by ATpoint ♦ 26k
2
votes
1
answer
210
views
1
answer
Draw coverage plot from bed file
deeptools coverage bed file written 4 months ago by ben.kunfang • 10 • updated 4 months ago by Alex Reynolds ♦ 29k
2
votes
0
answers
1.1k
views
0
answers
plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 2.4 years ago by ildem • 50 • updated 4 months ago by Biostar ♦♦ 20
0
votes
2
answers
3.3k
views
2
answers
Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 3.9 years ago by Sam • 70 • updated 6 months ago by Simply Bioinformatics • 150
5
votes
2
answers
314
views
6 follow
2
answers
.sra to bam conversion results in a "< myfile > does not have BAM or CRAM format error"
sra-toolkit samtools deeptools written 6 months ago by jordi.planells • 90 • updated 6 months ago by genomax ♦ 75k
5
votes
1
answer
375
views
1
answer
Issue running deeptools on cluster via snakemake
deeptools snakemake written 6 months ago by camerond • 150 • updated 6 months ago by russhh • 4.8k
1
vote
1
answer
512
views
1
answer
Deeptools for ChIP-Seq
deeptools chip-seq heatmap written 7 months ago by yugen30 • 10
2
votes
1
answer
1.2k
views
1
answer
show the names of the genes on the Y axis on the heatmap Deeptools
deeptools chip-seq rna-seq written 3.2 years ago by Bioiris • 0 • updated 6 months ago by yugen30 • 10
0
votes
1
answer
466
views
1
answer
Chip Seq analysis for H3K27me3,H3K27ac and K4me1 enrichment
deeptools chip-seq written 7 months ago by Researcher • 50 • updated 7 months ago by jared.andrews07 • 4.1k
0
votes
1
answer
225
views
1
answer
bamCompare the result if 0
deeptools chip-seq bamcompare written 8 months ago by HI • 0 • updated 8 months ago by Devon Ryan ♦ 93k
8
votes
1
answer
395
views
1
answer
How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 9 months ago by star • 190 • updated 9 months ago by Biostar ♦♦ 20
2
votes
1
answer
258
views
1
answer
what is difference between -i and -ibam in genomCoverage?
bedtools deeptools genomecoverage bamcoverage written 9 months ago by star • 190 • updated 9 months ago by ATpoint ♦ 26k
0
votes
1
answer
507
views
1
answer
ChIP-Seq density plot of the TSS regions?
bedtools deeptools ase chip-seq igv written 10 months ago by Susmita Mandal • 50 • updated 10 months ago by i.sudbery ♦ 6.3k
15
votes
1
answer
636
views
1
answer
error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 10 months ago by Lila M • 800 • updated 10 months ago by Devon Ryan ♦ 93k
2
votes
0
answers
391
views
0
answers
Identify genes with chip signal > input prior to peak calling
enrichment galaxy chip-seq chip signal deeptools written 10 months ago by SciDuck • 20
0
votes
0
answers
220
views
0
answers
How to deal with wig files separate bu watson and crick strand
deeptools groseq wig tssprofile written 10 months ago by Lila M • 800
0
votes
0
answers
370
views
0
answers
Deeptool ComputeGCBias causes fatal error
software error deeptools computegcbias sequencing written 11 months ago by mfro1505 • 0 • updated 11 months ago by RamRS ♦ 25k
2
votes
1
answer
691
views
1
answer
Installing and running pyGenomeTracks
pygenometracks deeptools hicmatrix hicexplorer written 13 months ago by rbronste • 300 • updated 12 months ago by wolffj.bioinf • 10
3
votes
1
answer
533
views
1
answer
Using FeatureCounts for ChIP-seq normalised files?
deeptools chip-seq written 12 months ago by a.rex • 190 • updated 12 months ago by Devon Ryan ♦ 93k
0
votes
0
answers
375
views
0
answers
Can I use deeptools to calculate nucleosome positions?
deeptools atac written 12 months ago by a.rex • 190
0
votes
0
answers
618
views
0
answers
Explaining PCA plots made from BigWig coverage files in DeepTools
deeptools atac-seq written 12 months ago by a.rex • 190 • updated 12 months ago by RamRS ♦ 25k
0
votes
0
answers
300
views
0
answers
Deeptools plotCorrelation function bug?
deeptools plotcorrelation written 13 months ago by Zee_S • 50
3
votes
2
answers
2.2k
views
2
answers
ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
deeptools chip-seq written 2.5 years ago by salamandra • 260 • updated 14 months ago by RamRS ♦ 25k
<prev • 80 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • USA/Boston, 1 minute ago
  • Glasgow, Scotland, 10 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 943 users visited in the last hour