Showing: deeptoolsreset
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Plotting chip signal at TSSs with deeptools
deeptools chip-seq computematrix written 3 months ago by srhic0 • updated 3 months ago by Devon Ryan93k
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
homer deeptools forum chip-seq ngsplot visualization written 3.8 years ago by Sinji2.9k • updated 3 months ago by ATpoint26k
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Draw coverage plot from bed file
deeptools coverage bed file written 4 months ago by ben.kunfang10 • updated 4 months ago by Alex Reynolds29k
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 2.4 years ago by ildem50 • updated 4 months ago by Biostar ♦♦ 20
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 3.9 years ago by Sam70 • updated 6 months ago by Simply Bioinformatics150
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Issue running deeptools on cluster via snakemake
deeptools snakemake written 6 months ago by camerond150 • updated 6 months ago by russhh4.8k
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Deeptools for ChIP-Seq
deeptools chip-seq heatmap written 7 months ago by yugen3010
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show the names of the genes on the Y axis on the heatmap Deeptools
deeptools chip-seq rna-seq written 3.2 years ago by Bioiris0 • updated 6 months ago by yugen3010
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Chip Seq analysis for H3K27me3,H3K27ac and K4me1 enrichment
deeptools chip-seq written 7 months ago by Researcher50 • updated 7 months ago by jared.andrews074.1k
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bamCompare the result if 0
deeptools chip-seq bamcompare written 8 months ago by HI0 • updated 8 months ago by Devon Ryan93k
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How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 9 months ago by star190 • updated 9 months ago by Biostar ♦♦ 20
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what is difference between -i and -ibam in genomCoverage?
bedtools deeptools genomecoverage bamcoverage written 9 months ago by star190 • updated 9 months ago by ATpoint26k
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ChIP-Seq density plot of the TSS regions?
bedtools deeptools ase chip-seq igv written 10 months ago by Susmita Mandal50 • updated 10 months ago by i.sudbery6.3k
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error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 10 months ago by Lila M 800 • updated 10 months ago by Devon Ryan93k
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Deeptool ComputeGCBias causes fatal error
software error deeptools computegcbias sequencing written 11 months ago by mfro15050 • updated 11 months ago by RamRS25k
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Installing and running pyGenomeTracks
pygenometracks deeptools hicmatrix hicexplorer written 13 months ago by rbronste300 • updated 12 months ago by wolffj.bioinf10
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Using FeatureCounts for ChIP-seq normalised files?
deeptools chip-seq written 12 months ago by a.rex190 • updated 12 months ago by Devon Ryan93k
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Explaining PCA plots made from BigWig coverage files in DeepTools
deeptools atac-seq written 12 months ago by a.rex190 • updated 12 months ago by RamRS25k
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