Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 109 results • page 1 of 4 • next >
0
votes
0
answers
44
views
0
answers
Deeptools installation fails (Could not find a version that satisfies the requirement matplotlib>=3.1.0)
deeptools python3 ubuntu written 2 days ago by DBScan • 20 • updated 1 day ago by ATpoint ♦ 38k
0
votes
0
answers
29
views
0
answers
Deeptools plotCoverage and bamPEFragmentSize change axes
deeptools next-gen coverage snp sequencing written 2 days ago by QPaps04 • 0
0
votes
0
answers
138
views
0
answers
help with segmentation fault deeptools
software error deeptools chip-seq written 15 days ago by campbell.1933 • 0
1
vote
1
answer
117
views
1
answer
Getting different values from deeptools bamCoverage CPM normalization, and from manually normalizing using samtools mpileup
deeptools bamcoverage atac-seq normalization cpm written 16 days ago by rjd254 • 0 • updated 15 days ago by ATpoint ♦ 38k
1
vote
0
answers
203
views
0
answers
No space left on device error with deeptools bamCompare
software error deeptools picard terminal bash written 8 weeks ago by jennxyzhang • 0 • updated 25 days ago by Biostar ♦♦ 20
0
votes
0
answers
206
views
0
answers
deeptools computeMatrix reference-point, want to plot 1kb before TSS and 1kb after TES then use plotHeatmap
software error deeptools chip-seq written 10 weeks ago by jennxyzhang • 0 • updated 26 days ago by Biostar ♦♦ 20
6
votes
1
answer
189
views
1
answer
deepTools NPZ to PCA plot with modifications
deeptools plotpca written 6 weeks ago by gnmcsbnfrmtcsclb • 30 • updated 5 weeks ago by Devon Ryan ♦ 96k
3
votes
1
answer
2.6k
views
1
answer
Help with DeepTools
software error deeptools chip-seq written 2.7 years ago by landrjos • 10 • updated 5 weeks ago by kennyday • 0
0
votes
0
answers
129
views
0
answers
Spike-in normalization with Cut&Tag data
cutandtag deeptools chip-seq normalization written 5 weeks ago by hina.abbas.bandukwala • 0
5
votes
2
answers
218
views
5 follow
2
answers
TSS metaprofile using Deeptools
gtf deeptools computematrix metaprofile written 7 weeks ago by mickey_95 • 10 • updated 6 weeks ago by zhuobaowen • 10
8
votes
1
answer
197
views
6 follow
1
answer
SizeFactors for BAM normalization
deeptools deseq2 sizefactors bamcoverage written 6 weeks ago by Anand Rao • 310 • updated 6 weeks ago by Devon Ryan ♦ 96k
1
vote
0
answers
173
views
0
answers
Deeptools ValueError: invalid literal for int() with base 10 error
deeptools chip-seq written 7 weeks ago by das2000sidd • 30
2
votes
1
answer
1.3k
views
1
answer
Comparison of bamCoverage log2 ratios in deeptools
deeptools chip-seq correlation written 2.6 years ago by ATpoint ♦ 38k • updated 10 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
91
views
1
answer
deeptools computeGCbias: what are the columns in the GCbiasFrequenciesFile?
deeptools gcbias computegcbias correctgcbias written 11 weeks ago by tanagholattorobche • 0 • updated 11 weeks ago by Devon Ryan ♦ 96k
11
votes
3
answers
160
views
5 follow
3
answers
interpreting GC-bias compute and correct results from DeepTools
deeptools gc-bias written 11 weeks ago by Anand Rao • 310
0
votes
0
answers
100
views
0
answers
Cluster by logfc over H3K43me3 peak region
deeptools chip-seq written 12 weeks ago by das2000sidd • 30
1
vote
1
answer
263
views
1
answer
ATAC-seq coverage tracks using bamCoverage from Deeptools
deeptools bigwig atac-seq bamcoverage written 3 months ago by mickey_95 • 10
3
votes
1
answer
215
views
1
answer
deepTools : No module named cycler
deeptools python cycler written 3 months ago by mbk0asis • 570
0
votes
0
answers
186
views
0
answers
Chip-Seq normalization between conditions
deeptools chip-seq written 3 months ago by srhic • 10
2
votes
1
answer
238
views
1
answer
Deeptools heatmap analysis - graphing unique clusters of heatmap
plotheatmap deeptools computematrix written 3 months ago by jamzaleg84 • 40 • updated 3 months ago by Devon Ryan ♦ 96k
4
votes
0
answers
302
views
0
answers
plotHeatmap for clustering samples
plotheatmap deeptools computematrix clustering written 4 months ago by jamzaleg84 • 40
0
votes
1
answer
2.3k
views
1
answer
plotProfile (deepTools) generated a peak on gene body region
plotprofile deeptools written 2.8 years ago by mbk0asis • 570 • updated 4 months ago by Shaurya Jauhari • 40
15
votes
1
answer
1.3k
views
1
answer
error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 20 months ago by Lila M • 820 • updated 5 months ago by Biostar ♦♦ 20
3
votes
0
answers
395
views
0
answers
Visualize top 10 increasing peaks of the ATAC-seq data
deeptools atac-seq heatmap written 6 months ago by kinalimeric • 20
2
votes
1
answer
470
views
1
answer
bamCompare output values ChIP/input normalization
deeptools chip-seq bamcompare normalization written 6 months ago by marco • 10 • updated 6 months ago by colin.kern • 920
2
votes
1
answer
439
views
1
answer
Chip-Seq input normalization with deeptools
deeptools chip-seq written 6 months ago by srhic • 10 • updated 6 months ago by jared.andrews07 ♦ 6.8k
0
votes
1
answer
791
views
1
answer
deepTools white dots on black background
deeptools written 3.4 years ago by Kasthuri • 270 • updated 6 months ago by Biostar ♦♦ 20
11
votes
2
answers
710
views
5 follow
2
answers
Normalization of ATAC SEQ data for the proper deeptools heatmap
deeptools atac seq normalization written 6 months ago by kinalimeric • 20 • updated 6 months ago by ATpoint ♦ 38k
2
votes
1
answer
213
views
1
answer
deeptools plotProfile plots inconsistently
plotprofile deeptools plotheatmap written 6 months ago by Ekalavya • 10 • updated 6 months ago by colin.kern • 920
0
votes
2
answers
206
views
2
answers
Removing outliers from bigwig files
deeptools next-gen chip-seq written 6 months ago by srhic • 10
<prev • 109 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • Russian Federation, just now
  • Bergen, Norway, 1 minute ago
  • Russian Federation, 2 minutes ago
  • Hannover Medical School, 3 minutes ago
  • London, 3 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1759 users visited in the last hour