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<prev • 73 results • page 1 of 3 • next >
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 3.5 years ago by Sam • 70 • updated 7 weeks ago by Simply Bioinformatics • 150
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2
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179
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6 follow
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.sra to bam conversion results in a "< myfile > does not have BAM or CRAM format error"
sra-toolkit samtools deeptools written 7 weeks ago by jordi.planells • 80 • updated 7 weeks ago by genomax ♦ 70k
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1
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231
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1
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Issue running deeptools on cluster via snakemake
deeptools snakemake written 9 weeks ago by camerond • 70 • updated 9 weeks ago by russhh • 4.6k
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1
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262
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1
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Deeptools for ChIP-Seq
deeptools chip-seq heatmap written 12 weeks ago by yugen30 • 10
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show the names of the genes on the Y axis on the heatmap Deeptools
deeptools chip-seq rna-seq written 2.8 years ago by Bioiris • 0 • updated 10 weeks ago by yugen30 • 10
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267
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1
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Chip Seq analysis for H3K27me3,H3K27ac and K4me1 enrichment
deeptools chip-seq written 12 weeks ago by Researcher • 40 • updated 12 weeks ago by jared.andrews07 • 2.7k
3
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2
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760
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[ChIP-seq. signal plot] How to align the based line of different samples?
deeptools chip-seq normalization written 19 months ago by chiefcat • 100 • updated 3 months ago by Biostar ♦♦ 20
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153
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1
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bamCompare the result if 0
deeptools chip-seq bamcompare written 4 months ago by HI • 0 • updated 4 months ago by Devon Ryan ♦ 91k
8
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1
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312
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1
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How extract the longest overlap?
bedtools deeptools bedops intersect overlap written 4 months ago by star • 170 • updated 4 months ago by Biostar ♦♦ 20
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1
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163
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1
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what is difference between -i and -ibam in genomCoverage?
bedtools deeptools genomecoverage bamcoverage written 4 months ago by star • 170 • updated 4 months ago by ATpoint ♦ 19k
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1
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337
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1
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ChIP-Seq density plot of the TSS regions?
bedtools deeptools ase chip-seq igv written 5 months ago by Susmita Mandal • 50 • updated 5 months ago by i.sudbery ♦ 5.0k
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1
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379
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1
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error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 5 months ago by Lila M • 790 • updated 5 months ago by Devon Ryan ♦ 91k
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290
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Identify genes with chip signal > input prior to peak calling
enrichment galaxy chip-seq chip signal deeptools written 6 months ago by SciDuck • 20
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148
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How to deal with wig files separate bu watson and crick strand
deeptools groseq wig tssprofile written 6 months ago by Lila M • 790
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274
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Deeptool ComputeGCBias causes fatal error
software error deeptools computegcbias sequencing written 7 months ago by mfro1505 • 0 • updated 7 months ago by RamRS ♦ 22k
2
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1
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518
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1
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Installing and running pyGenomeTracks
pygenometracks deeptools hicmatrix hicexplorer written 9 months ago by rbronste • 240 • updated 7 months ago by wolffj.bioinf • 10
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1
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363
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1
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Using FeatureCounts for ChIP-seq normalised files?
deeptools chip-seq written 7 months ago by a.rex • 190 • updated 7 months ago by Devon Ryan ♦ 91k
0
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271
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0
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Can I use deeptools to calculate nucleosome positions?
deeptools atac written 8 months ago by a.rex • 190
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451
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0
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Explaining PCA plots made from BigWig coverage files in DeepTools
deeptools atac-seq written 8 months ago by a.rex • 190 • updated 8 months ago by RamRS ♦ 22k
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211
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0
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Deeptools plotCorrelation function bug?
deeptools plotcorrelation written 9 months ago by Zee_S • 30
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ValueError: invalid literal for int() with base 10: 'start' computeMatrix of deeptools
deeptools chip-seq written 2.1 years ago by salamandra • 230 • updated 10 months ago by RamRS ♦ 22k
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1
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512
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1
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deepTools2: compute matrix error
software error deeptools galaxy written 10 months ago by dabates06 • 0 • updated 10 months ago by Devon Ryan ♦ 91k
2
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1
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246
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1
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what scale does multiBigwigSummary use for score
multibigwigsummary deeptools score written 11 months ago by Lila M • 790 • updated 11 months ago by Devon Ryan ♦ 91k
3
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1
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835
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1
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Different bigwig file sizes between BedgraphToBigwig and bamCoverage
bamcoverage ucsc bigwig deeptools bedgraphtobigwig written 11 months ago by m93 • 150
3
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1
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772
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1
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deeptools bamcompare/bamcoverage merging bins?
deeptools chip-seq written 12 months ago by gewa • 0 • updated 12 months ago by ATpoint ♦ 19k
2
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1
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446
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1
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deepTools - change line colors in profile plots above a heatmap
deeptools profile plot heatmap written 12 months ago by mbk0asis • 440 • updated 12 months ago by Devon Ryan ♦ 91k
2
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1
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1
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Deeptools plotHeatmap: too much black! missing data assigned incorrectly
plotheatmap deeptools missing data computematrix written 13 months ago by David K • 0 • updated 13 months ago by Devon Ryan ♦ 91k
5
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2
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548
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deepTools plot profile problem
deeptools title profile written 13 months ago by elisheva • 70 • updated 13 months ago by Devon Ryan ♦ 91k
2
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1
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711
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1
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Y axis PlotHeatMap Deeptools
deeptools written 13 months ago by fusion.slope • 200 • updated 13 months ago by Devon Ryan ♦ 91k
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1
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484
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1
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Plotting multiple signal files against a single genomic region
deeptools chip-seq rna-seq written 16 months ago by keller.mckowen • 10 • updated 15 months ago by Alex Reynolds ♦ 28k
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