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DESeq2 DEG analysis using different sequencing depth data
sequencing deseq2 rna-seq deg depth written 12 hours ago by woongjaej10 • updated 1 hour ago by h.mon20k
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 11 days ago by AnneC0 • updated 11 days ago by Kevin Blighe30k
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transcription expression matrix for DESEQ2
R deseq2 rna-seq deg written 4 weeks ago by Duckula0 • updated 4 weeks ago by andrew.j.skelton735.3k
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making matrix model for samples with one wild type and 4 different results
R edger rna-seq deg voom written 9 weeks ago by moru_all0 • updated 9 weeks ago by Marks40
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How to show both edgeR and deseq2 results in a single volcano plot; highliting overlaps
R rna-seq volcano deg written 5 months ago by Farbod3.2k • updated 5 months ago by russhh3.9k
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How to perform univariate generalized linear models on RNA-seq data?
sartools rna-seq deg glm written 5 months ago by Farbod3.2k • updated 5 months ago by h.mon20k
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Annotating DEG Heatmap by Go terms
annotation go terms deg heatmap written 7 months ago by lawarde.ankita120 • updated 7 months ago by Kevin Blighe30k
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Tools to do a linear or logistic regression of DEG
rna-seq deg written 7 months ago by amy1630 • updated 7 months ago by Kritika250
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How filter genes to construct co-expression network?
wgcna deg filtering co-expreesion network written 9 months ago by niutster80 • updated 9 months ago by Kevin Blighe30k
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Identify differentially expressed genes in scatter plot
scatter plot rna-seq deg written 10 months ago by woongjaej10 • updated 10 months ago by Hussain Ather880
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GEO2R - significantly DEGs
geo geo2r deg written 12 months ago by hcv0
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Dataset normalised to TPM (GSE85066)
R tpm rna-seq rstudio deg written 14 months ago by Vania10 • updated 14 months ago by h.mon20k
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how investigate genes after meta-analysis in each experiment
deseq2 meta-analysis metaseq deg written 15 months ago by Edalat30 • updated 15 months ago by Biostar ♦♦ 20
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Differentially Expressed Genes Analysis with RNA-Seq data
next-gen rna-seq deg written 17 months ago by Xiaokang ZH40 • updated 17 months ago by EagleEye5.7k
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how to set threshold of fdr and p values
limma deg written 18 months ago by flavia0 • updated 18 months ago by b.nota5.0k
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How to define a non differentially expressed gene?
deseq2 edger deg non-deg rna-seq written 19 months ago by xieshaojun062190 • updated 18 months ago by Michael Love1.6k
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What does benchmark method exactly mean?
benchmark methods edger deg rna-seq written 19 months ago by statfa330 • updated 19 months ago by Macspider2.6k
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Fold Change accepts, FDR denies; which one to use ?
fdr fc rna-seq deg written 20 months ago by Farbod3.2k • updated 20 months ago by Devon Ryan85k
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RNA-Seq And Genome Annotation file (GFF/GTF)
genome assembly rna-seq deg written 21 months ago by sanathoi10 • updated 21 months ago by pupaliwen0
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