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3
votes
2
answers
124
views
2
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Deterimining overall number of differentially expressed genes between WT and KO samples
scrna-seq findmarkers seurat deg written 8 days ago by singcell • 0
1
vote
1
answer
100
views
1
answer
Pathways Analysis in R
pathways deg R written 10 days ago by GiuliaAC • 0 • updated 10 days ago by volidif659 • 0
1
vote
0
answers
99
views
0
answers
Calculating Contrast Matrix in Limma for Differential Expression
R contrast-matrix limma deg micro-array written 5 weeks ago by spriyansh29 • 30
1
vote
1
answer
91
views
1
answer
Significant gene expression i non-normal distributed gene expression data
rna-seq deg written 6 weeks ago by jabbari.parnian • 0 • updated 6 weeks ago by i.sudbery ♦ 8.2k
2
votes
0
answers
187
views
0
answers
Find Up-regulated genes and Create Volcano Plot for DEG's in R
R deg volcano-plot written 9 weeks ago by donnieDarko • 0
0
votes
1
answer
148
views
1
answer
How to distinguish malignant vs non-malignant cells based on gene expression data?
rna-seq deg written 10 weeks ago by jabbari.parnian • 0 • updated 10 weeks ago by Kevin Blighe ♦ 61k
0
votes
1
answer
86
views
1
answer
Cutoff value for DEGs
cutoff deg written 10 weeks ago by zelda • 20 • updated 10 weeks ago by ATpoint ♦ 36k
4
votes
1
answer
161
views
1
answer
RNASeq data analysis without control
rna-seq deg transcriptome written 3 months ago by devarora • 150
3
votes
1
answer
320
views
1
answer
Differential Expression Analysis using Bioconductor (RStudio) and GEO2R (GEO)
gene R bioconductor microarray deg written 4 months ago by a.lathifbt • 20 • updated 4 months ago by Kevin Blighe ♦ 61k
1
vote
1
answer
379
views
1
answer
How to know if I should use voomWithQualityWeights() or not?
voom limma deg rna-seq written 4 months ago by pedrodcb • 50 • updated 4 months ago by Kevin Blighe ♦ 61k
0
votes
0
answers
157
views
0
answers
Code for multiclass differential gene expression analysis
function ttest deg written 4 months ago by orzech_mag • 210
1
vote
1
answer
179
views
1
answer
Handling Microarray datasets from different experiments for DEG analysis
R microarray deg datasets written 5 months ago by a.lathifbt • 20
3
votes
0
answers
161
views
0
answers
Validation of Aberrantly Expressed Genes Using TruSeq
validation rna-seq deg truseq written 5 months ago by v.nguyen0009 • 0
1
vote
1
answer
282
views
1
answer
DESeq2 4 group comparison
deseq2 rna-seq deg heatmap written 5 months ago by arabi • 10 • updated 5 months ago by ATpoint ♦ 36k
1
vote
0
answers
267
views
0
answers
How to make Heatmap about DEG?
ballgown rna-seq deg heatmap written 5 months ago by arabi • 10
4
votes
0
answers
201
views
0
answers
EdgeR Warning message In estimateCommonDisp.
R rna-seq edger deg written 5 months ago by Dr.Animo • 10
0
votes
0
answers
201
views
0
answers
differential expression analysis with z score normalized microarray data
microarray deg limma written 7 months ago by gracie • 20 • updated 6 months ago by Biostar ♦♦ 20
2
votes
1
answer
241
views
1
answer
Finding of essential genes using database
deg blast essential genes written 7 months ago by anis.geb.cu • 10 • updated 7 months ago by julien.fouret.fr • 20
0
votes
1
answer
464
views
1
answer
Converting multiple GSE data into expression matrix
R expression matrix deg wgcna written 8 months ago by ghataksoumyakanti • 0
1
vote
1
answer
348
views
1
answer
Analyzing LogRPKM Counts Data for finding DEGs(Differential Expressed Genes)
rna-seq deg written 9 months ago by naseerkhan861 • 0 • updated 9 months ago by ATpoint ♦ 36k
0
votes
2
answers
328
views
2
answers
gene expression RNAseq
rna-seq deg written 9 months ago by domingues.pesca • 0
12
votes
1
answer
554
views
1
answer
Batch effect problem DEG, DESseq2
batch-effect deseq2 rna-seq deg written 9 months ago by maria2019 • 100 • updated 9 months ago by ATpoint ♦ 36k
4
votes
1
answer
486
views
1
answer
Detecting outlier DESeq2
deseq2 pca deg bulk rna-seq written 9 months ago by maria2019 • 100 • updated 9 months ago by Kevin Blighe ♦ 61k
1
vote
1
answer
255
views
1
answer
How to analyze micoarray data with more than one source.
microarray deg several tissues written 9 months ago by nanobiotech.com • 0
2
votes
0
answers
420
views
0
answers
How to make differential expression analysis with normalized data?
fpkm deg rna-seq written 10 months ago by LuisNagano • 40 • updated 10 months ago by ATpoint ♦ 36k
0
votes
0
answers
865
views
0
answers
Understanding DESeq2 padj and Volcano Plot
volcano deseq2 rna-seq deg expression written 10 months ago by juan.crescente • 40
1
vote
1
answer
443
views
1
answer
How could I find Differential Genes in Expression Matrix File NOT gset by R?
R bioconductor microarray deg written 11 months ago by f-tavakoli • 10 • updated 11 months ago by zx8754 ♦ 9.4k
2
votes
1
answer
475
views
1
answer
illumina ht 12 v4 data analysis
illumina gene expression limma deg annotation written 11 months ago by amin.ghareyazi • 0 • updated 11 months ago by Gordon Smyth • 1.7k
2
votes
1
answer
785
views
1
answer
How to connect htseq-count to DESeq2?
R next-gen rna-seq deg mapping written 11 months ago by scheme4193 • 50 • updated 11 months ago by h.mon ♦ 30k
7
votes
1
answer
404
views
1
answer
using different microarray datasets (meta-analysis?) for DEG pipeline
meta-analysis microarray deg batch effect written 12 months ago by mosesoo • 30 • updated 12 months ago by Kevin Blighe ♦ 61k
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