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7
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1
answer
144
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1
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using different microarray datasets (meta-analysis?) for DEG pipeline
meta-analysis microarray deg batch effect written 27 days ago by Moosa • 30 • updated 26 days ago by Kevin Blighe ♦ 45k
1
vote
1
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95
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1
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GEO differential expression analysis
geo R deg written 28 days ago by yehchan57 • 0 • updated 28 days ago by zephyr_falcon • 70
3
votes
1
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146
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1
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gene expression anlysis
gene microarray deg written 7 weeks ago by aishwaryaswain12121995 • 0 • updated 6 weeks ago by Kevin Blighe ♦ 45k
6
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1
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220
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1
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Differentially expressed genes from expression table (RNAseq)
geo deg expression table rna-seq written 6 weeks ago by english.server • 160 • updated 6 weeks ago by ATpoint ♦ 19k
13
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2
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1.0k
views
5 follow
2
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How to show both edgeR and deseq2 results in a single volcano plot; highliting overlaps
R deg volcano plot rna-seq written 14 months ago by Farbod • 3.3k • updated 6 weeks ago by zx8754 ♦ 7.8k
6
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2
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425
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7 follow
2
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How to highlight certain genes in a Volcano Plot in R
R volcano plot deg written 3 months ago by ishackm • 70 • updated 3 months ago by krushnach80 • 530
0
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0
answers
172
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0
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How to analyse a list of DEG (differentially expressed genes) and DASG (differentially alternatively splices genes)
ngs analysis rna-seq deg written 4 months ago by darbinator • 190
2
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2
answers
223
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2
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DEG from BAM file
gene R rna-seq deg written 4 months ago by bioz • 10 • updated 4 months ago by WouterDeCoster ♦ 40k
0
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1
answer
252
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1
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DEG analysis from gene list
rna-seq deg written 4 months ago by bioz • 10 • updated 4 months ago by Buffo • 1.6k
1
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0
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156
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0
answers
Differentially expressed genes interactome
rna-seq deg interactome written 5 months ago by maria.giovanna.de.marino • 0
0
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2
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439
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2
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Any database for downloading cancer cell-lines transcriptome differential expressed gene (DEG) list? (Normal vs cancer cell-lines)
database cancer microarray deg rna-seq written 6 months ago by chiefcat • 100 • updated 6 months ago by Joseph Hughes • 2.7k
3
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0
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297
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0
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Sample-level differential expression for TCGA samples
tcga de rna-seq deg written 6 months ago by rin • 30
0
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0
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237
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0
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Accessing DEG files with extension dat, phr pin,psq
deg files sequence deg written 8 months ago by tzainab.phd16seecs • 0 • updated 8 months ago by WouterDeCoster ♦ 40k
0
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0
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274
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0
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strange output from DEGseq when searching differential expressed genes
rna-seq deg written 9 months ago by tujuchuanli • 40 • updated 8 months ago by Biostar ♦♦ 20
2
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0
answers
687
views
0
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What is the ideal FDR and fold change cutoff to consider in a RNA-seq experiment and which one should be the priority for selecting the DEGs?
fdr deseq2 rna-seq deg fold change written 9 months ago by aishu.jp • 10
2
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1
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487
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1
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DESeq2 DEG analysis using different sequencing depth data
sequencing deseq2 rna-seq deg depth written 9 months ago by woongjaej • 10 • updated 9 months ago by h.mon ♦ 26k
0
votes
1
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714
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1
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 9 months ago by AnneC • 0 • updated 9 months ago by Kevin Blighe ♦ 45k
2
votes
1
answer
598
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1
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RSEM with ERCC spike-ins formatting issues, ERCC sequences never make it into the reference
ercc rna-seq rsem deg written 10 months ago by brian.capaldo • 10
1
vote
1
answer
506
views
1
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Combine microarray and RNA-seq gene expression for differentially expression analysis
microarray rna-seq deg written 10 months ago by landscape95 • 160
2
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1
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498
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1
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transcription expression matrix for DESEQ2
R deseq2 rna-seq deg written 10 months ago by Duckula • 20 • updated 10 months ago by andrew.j.skelton73 ♦ 5.8k
2
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1
answer
571
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6 follow
1
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Why my limma DEG result in top Table all without significant meaning,showing logFC <1.5 or logFC>-1.5 ?
;logfc limma deg toptable written 10 months ago by BioLite • 20
6
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0
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530
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0
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lesser fold change value using RMA background correction
normalization rma microarray deg limma written 10 months ago by Paul • 80
0
votes
1
answer
321
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1
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making matrix model for samples with one wild type and 4 different results
R edger rna-seq deg voom written 11 months ago by moru_all • 0 • updated 11 months ago by Marks • 40
1
vote
1
answer
619
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1
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How to perform univariate generalized linear models on RNA-seq data?
sartools rna-seq deg glm written 14 months ago by Farbod • 3.3k • updated 14 months ago by h.mon ♦ 26k
8
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1
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831
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5 follow
1
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Design/contrast matrix for Multivariate experimental design in limma
design matrix limma deg written 15 months ago by 1234anjalianjali1234 • 30 • updated 15 months ago by h.mon ♦ 26k
0
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0
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594
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0
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Not able to get DEG from FireBrowse data using R
R rna-seq firebrowse deg written 15 months ago by lawarde.ankita1 • 30
0
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0
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704
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0
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Differential Gene expression between low survival and high survival samples from RNAseq
R deg survival rna-seq written 16 months ago by lawarde.ankita1 • 30
4
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1
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1.4k
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5 follow
1
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Annotating DEG Heatmap by Go terms
annotation go terms deg heatmap written 16 months ago by lawarde.ankita1 • 30 • updated 16 months ago by Kevin Blighe ♦ 45k
0
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1
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496
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1
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Tools to do a linear or logistic regression of DEG
rna-seq deg written 17 months ago by amy16 • 40 • updated 17 months ago by Kritika • 260
7
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1
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2.4k
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6 follow
1
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How filter genes to construct co-expression network?
wgcna deg filtering co-expreesion network written 18 months ago by niutster • 80 • updated 18 months ago by Kevin Blighe ♦ 45k
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