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2
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210
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Dataset normalised to TPM (GSE85066)
R tpm rna-seq rstudio deg written 8 weeks ago by Vania • 10 • updated 8 weeks ago by h.mon ♦ 8.7k
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223
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how investigate genes after meta-analysis in each experiment
deseq2 meta-analysis metaseq deg written 3 months ago by Edalat • 10 • updated 3 months ago by Biostar ♦♦ 20
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155
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DEGs of various metastatic samples
metastasis deg written 3 months ago by fahime.falahi • 0
10
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2
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383
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2
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Differentially Expressed Genes Analysis with RNA-Seq data
next-gen rna-seq deg written 4 months ago by Xiaokang ZH • 20 • updated 4 months ago by EagleEye • 4.7k
2
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2
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341
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6 follow
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how to set threshold of fdr and p values
limma deg written 5 months ago by flavia • 0 • updated 5 months ago by b.nota • 3.5k
13
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4
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449
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6 follow
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How to define a non differentially expressed gene?
deseq2 edger deg non-deg rna-seq written 6 months ago by xieshaojun0621 • 80 • updated 5 months ago by Michael Love • 1.4k
3
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216
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What does benchmark method exactly mean?
benchmark methods edger deg rna-seq written 6 months ago by natalia.fghf • 260 • updated 6 months ago by Macspider • 1.5k
8
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1
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317
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1
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Fold Change accepts, FDR denies; which one to use ?
fdr fc rna-seq deg written 7 months ago by Farbod • 3.0k • updated 7 months ago by Devon Ryan ♦ 71k
1
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1
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466
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1
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RNA-Seq And Genome Annotation file (GFF/GTF)
genome assembly rna-seq deg written 8 months ago by sanathoi • 10 • updated 8 months ago by pupaliwen • 0
7
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1
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8 follow
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Forum: How to convincingly illustrate and discuss negative results in NGS.
forum negative results rna-seq deg written 8 months ago by Carlo Yague • 3.2k
11
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2
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646
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5 follow
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Heatmaps: Why and How to use them
heatmaps rna-seq deg written 8 months ago by hougiotaejut • 10 • updated 8 months ago by mforde84 • 900
3
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0
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715
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Forum: Game Theory: how to use it in RNA-seq DEG analysis
forum game theory rna-seq deg written 11 months ago by Farbod • 3.0k
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526
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RNA-seq time series data analysis ********* updated
multide main effects deg written 12 months ago by natalia.fghf • 260
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2
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548
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2
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Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 13 months ago by camelbbs • 610 • updated 13 months ago by i.sudbery • 1.6k
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497
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From cuffmerge to cuffdiff: Which .gtf files should be merged if assession differential gene expression
cuffdiff rna-seq cuffmerge deg written 14 months ago by kennethcondon2007 • 820
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454
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network analysis of DEGs
module finder network analysis deg written 15 months ago by Shamim Sarhadi • 170
2
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0
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424
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Isoforms with opposite read counts and reverse complement sequences
illumina next-gen deg bowtie2 written 15 months ago by davidfishy • 10
1
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0
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568
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Which plan is more reasonable, gsea on total dataset , on subset of total dataset with DEG or preRanked gsea?
gsea deg written 17 months ago by Shamim Sarhadi • 170 • updated 17 months ago by John ♦ 11k
6
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2
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640
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2
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which set of results are more reliable and precise for DEG analysis, limma vs GSEA ?
limma deg gsea written 17 months ago by Shamim Sarhadi • 170 • updated 17 months ago by vchris_ngs • 4.0k
0
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497
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1
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A rational way for selecting the number of DEG with significant p-value for GSEA
deg gsea written 18 months ago by Shamim Sarhadi • 170 • updated 18 months ago by b.nota • 3.5k
1
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512
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giving weight to DEG from limma output
limma gsea deg written 18 months ago by Shamim Sarhadi • 170
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1
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464
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1
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Analysis ideas for a list of DEG with a lot of unannotated regions?
R microarray deg written 18 months ago by hakimelakhrass • 70 • updated 18 months ago by biocyberman • 640
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1.1k
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The best way to get the biologically meaningful interpretation from differentially expressed genes (DEG)
transcriptome assembly gene ontology deg written 19 months ago by seta • 920
2
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1
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508
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1
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How to see if DEGs are grouped in genome?
overlap deg rna-seq written 2.0 years ago by Parham • 1.3k • updated 24 months ago by Christian • 2.5k
0
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1
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930
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A lot of differentially expressed genes
microarray deg written 2.1 years ago by mahdijalili • 20 • updated 2.1 years ago by svlachavas • 140
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Differentially expressed microRNA analysis using bowtie2-cufflink-cuffdiff
bowtie2; microrna; cuffdiff; deg cufflink; written 2.3 years ago by illinois.ks • 110
1
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1
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DEG by Trinity pipeline
trinity rna-seq deg written 2.6 years ago by mina • 20 • updated 2.6 years ago by biogirl • 140
7
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finding differentially expressed genes in three arm treatment RNA seq data
3 arm treatment rna-seq deg written 3.3 years ago by HNK • 80 • updated 3.3 years ago by dariober • 8.0k
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Construct DAG network from DESEQ2 DEGs
network deseq2 gominer rna-seq deg written 3.4 years ago by luckbuttered • 20
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