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How to analyse a list of DEG (differentially expressed genes) and DASG (differentially alternatively splices genes)
ngs analysis rna-seq deg written 5 days ago by darbinator • 40
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DEG from BAM file
gene R rna-seq deg written 11 days ago by bioz • 0 • updated 11 days ago by WouterDeCoster ♦ 37k
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DEG analysis from gene list
rna-seq deg written 16 days ago by bioz • 0 • updated 16 days ago by Buffo • 1.4k
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Differentially expressed genes interactome
rna-seq deg interactome written 8 weeks ago by maria.giovanna.de.marino • 0
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Any database for downloading cancer cell-lines transcriptome differential expressed gene (DEG) list? (Normal vs cancer cell-lines)
database cancer microarray deg rna-seq written 10 weeks ago by chiefcat • 90 • updated 9 weeks ago by Joseph Hughes • 2.7k
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Sample-level differential expression for TCGA samples
tcga de rna-seq deg written 11 weeks ago by rin • 30
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Accessing DEG files with extension dat, phr pin,psq
deg files sequence deg written 4 months ago by tzainab.phd16seecs • 0 • updated 4 months ago by WouterDeCoster ♦ 37k
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strange output from DEGseq when searching differential expressed genes
rna-seq deg written 5 months ago by tujuchuanli • 30 • updated 4 months ago by Biostar ♦♦ 20
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What is the ideal FDR and fold change cutoff to consider in a RNA-seq experiment and which one should be the priority for selecting the DEGs?
fdr deseq2 rna-seq deg fold change written 5 months ago by aishu.jp • 10
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DESeq2 DEG analysis using different sequencing depth data
sequencing deseq2 rna-seq deg depth written 5 months ago by woongjaej • 10 • updated 5 months ago by h.mon ♦ 24k
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calculate p-value/q-value use fpkm - RNA-Seq
pvalue fpkm rna-seq q-value deg written 5 months ago by AnneC • 0 • updated 5 months ago by Kevin Blighe ♦ 39k
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RSEM with ERCC spike-ins formatting issues, ERCC sequences never make it into the reference
ercc rna-seq rsem deg written 6 months ago by brian.capaldo • 10
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Combine microarray and RNA-seq gene expression for differentially expression analysis
microarray rna-seq deg written 6 months ago by landscape95 • 160
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transcription expression matrix for DESEQ2
R deseq2 rna-seq deg written 6 months ago by Duckula • 0 • updated 6 months ago by andrew.j.skelton73 ♦ 5.5k
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Why my limma DEG result in top Table all without significant meaning,showing logFC <1.5 or logFC>-1.5 ?
;logfc limma deg toptable written 6 months ago by BioLite • 20
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lesser fold change value using RMA background correction
normalization rma microarray deg limma written 6 months ago by Paul • 70
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making matrix model for samples with one wild type and 4 different results
R edger rna-seq deg voom written 7 months ago by moru_all • 0 • updated 7 months ago by Marks • 40
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How to show both edgeR and deseq2 results in a single volcano plot; highliting overlaps
R rna-seq volcano deg written 10 months ago by Farbod • 3.2k • updated 10 months ago by russhh • 4.2k
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How to perform univariate generalized linear models on RNA-seq data?
sartools rna-seq deg glm written 10 months ago by Farbod • 3.2k • updated 10 months ago by h.mon ♦ 24k
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Design/contrast matrix for Multivariate experimental design in limma
design matrix limma deg written 11 months ago by 1234anjalianjali1234 • 30 • updated 11 months ago by h.mon ♦ 24k
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Not able to get DEG from FireBrowse data using R
R rna-seq firebrowse deg written 11 months ago by lawarde.ankita1 • 30
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Differential Gene expression between low survival and high survival samples from RNAseq
R deg survival rna-seq written 12 months ago by lawarde.ankita1 • 30
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Annotating DEG Heatmap by Go terms
annotation go terms deg heatmap written 13 months ago by lawarde.ankita1 • 30 • updated 13 months ago by Kevin Blighe ♦ 39k
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Tools to do a linear or logistic regression of DEG
rna-seq deg written 13 months ago by amy16 • 40 • updated 13 months ago by Kritika • 260
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How filter genes to construct co-expression network?
wgcna deg filtering co-expreesion network written 14 months ago by niutster • 80 • updated 14 months ago by Kevin Blighe ♦ 39k
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Identify differentially expressed genes in scatter plot
scatter plot rna-seq deg written 16 months ago by woongjaej • 10 • updated 16 months ago by Hussain Ather • 910
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Comparing DEG result from different experiment
rna-seq deg written 16 months ago by bharata1803 • 420
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Differential Expressed Genes by FPKM expression matrix
R fpkm rna-seq deg written 17 months ago by morteza.kouhsar • 0
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GEO2R - significantly DEGs
geo geo2r deg written 17 months ago by hcv • 0
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Dataset normalised to TPM (GSE85066)
R tpm rna-seq rstudio deg written 20 months ago by Vania • 10 • updated 20 months ago by h.mon ♦ 24k
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