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13
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2
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356
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5 follow
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How to show both edgeR and deseq2 results in a single volcano plot; highliting overlaps
R rna-seq volcano deg written 10 weeks ago by Farbod • 3.1k • updated 10 weeks ago by russhh • 3.6k
1
vote
1
answer
131
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1
answer
How to perform univariate generalized linear models on RNA-seq data?
sartools rna-seq deg glm written 11 weeks ago by Farbod • 3.1k • updated 11 weeks ago by h.mon ♦ 16k
8
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1
answer
301
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5 follow
1
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Design/contrast matrix for Multivariate experimental design in limma
design matrix limma deg written 3 months ago by 1234anjalianjali1234 • 30 • updated 3 months ago by h.mon ♦ 16k
0
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0
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221
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0
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Not able to get DEG from FireBrowse data using R
R rna-seq firebrowse deg written 3 months ago by lawarde.ankita1 • 20
0
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0
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221
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0
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Differential Gene expression between low survival and high survival samples from RNAseq
R deg survival rna-seq written 3 months ago by lawarde.ankita1 • 20
2
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1
answer
354
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1
answer
Annotating DEG Heatmap by Go terms
annotation go terms deg heatmap written 4 months ago by lawarde.ankita1 • 20 • updated 4 months ago by Kevin Blighe ♦ 24k
0
votes
1
answer
187
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1
answer
Tools to do a linear or logistic regression of DEG
rna-seq deg written 4 months ago by amy16 • 20 • updated 4 months ago by Kritika • 250
2
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1
answer
727
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5 follow
1
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How filter genes to construct co-expression network?
wgcna deg filtering co-expreesion network written 6 months ago by niutster • 70 • updated 6 months ago by Kevin Blighe ♦ 24k
0
votes
1
answer
461
views
1
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Identify differentially expressed genes in scatter plot
scatter plot rna-seq deg written 7 months ago by woongjaej • 10 • updated 7 months ago by Hussain Ather • 880
1
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0
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273
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0
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Comparing DEG result from different experiment
rna-seq deg written 7 months ago by bharata1803 • 280
0
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0
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623
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0
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Differential Expressed Genes by FPKM expression matrix
R fpkm rna-seq deg written 9 months ago by morteza.kouhsar • 0
0
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0
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361
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0
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GEO2R - significantly DEGs
geo geo2r deg written 9 months ago by hcv • 0
2
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1
answer
473
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1
answer
Dataset normalised to TPM (GSE85066)
R tpm rna-seq rstudio deg written 11 months ago by Vania • 10 • updated 11 months ago by h.mon ♦ 16k
0
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0
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386
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how investigate genes after meta-analysis in each experiment
deseq2 meta-analysis metaseq deg written 13 months ago by Edalat • 30 • updated 12 months ago by Biostar ♦♦ 20
0
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0
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330
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0
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DEGs of various metastatic samples
metastasis deg written 12 months ago by fahime.falahi • 0
10
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2
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976
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2
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Differentially Expressed Genes Analysis with RNA-Seq data
next-gen rna-seq deg written 14 months ago by Xiaokang ZH • 40 • updated 14 months ago by EagleEye • 5.5k
2
votes
2
answers
1.2k
views
6 follow
2
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how to set threshold of fdr and p values
limma deg written 15 months ago by flavia • 0 • updated 15 months ago by b.nota ♦ 4.3k
13
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4
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901
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6 follow
4
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How to define a non differentially expressed gene?
deseq2 edger deg non-deg rna-seq written 16 months ago by xieshaojun0621 • 80 • updated 15 months ago by Michael Love • 1.6k
3
votes
1
answer
490
views
1
answer
What does benchmark method exactly mean?
benchmark methods edger deg rna-seq written 16 months ago by statfa • 310 • updated 16 months ago by Macspider • 2.4k
8
votes
1
answer
713
views
1
answer
Fold Change accepts, FDR denies; which one to use ?
fdr fc rna-seq deg written 17 months ago by Farbod • 3.1k • updated 17 months ago by Devon Ryan ♦ 81k
1
vote
1
answer
812
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1
answer
RNA-Seq And Genome Annotation file (GFF/GTF)
genome assembly rna-seq deg written 18 months ago by sanathoi • 10 • updated 18 months ago by pupaliwen • 0
7
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1
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1.2k
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8 follow
1
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Forum: How to convincingly illustrate and discuss negative results in NGS.
forum negative results rna-seq deg written 18 months ago by Carlo Yague • 4.1k
11
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2
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1.3k
views
5 follow
2
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Heatmaps: Why and How to use them
heatmaps rna-seq deg written 18 months ago by hougiotaejut • 10 • updated 18 months ago by mforde84 • 1.2k
3
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0
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1.1k
views
0
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Forum: Game Theory: how to use it in RNA-seq DEG analysis
forum game theory rna-seq deg written 21 months ago by Farbod • 3.1k
1
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0
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962
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0
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RNA-seq time series data analysis ********* updated
multide main effects deg written 22 months ago by statfa • 310
8
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2
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873
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2
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Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 23 months ago by camelbbs • 630 • updated 23 months ago by i.sudbery • 2.4k
0
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0
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833
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From cuffmerge to cuffdiff: Which .gtf files should be merged if assession differential gene expression
cuffdiff rna-seq cuffmerge deg written 2.0 years ago by YaGalbi • 1.3k
0
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0
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715
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network analysis of DEGs
module finder network analysis deg written 2.1 years ago by Shamim Sarhadi • 200
2
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0
answers
614
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0
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Isoforms with opposite read counts and reverse complement sequences
illumina next-gen deg bowtie2 written 2.1 years ago by davidfishy • 10
1
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914
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Which plan is more reasonable, gsea on total dataset , on subset of total dataset with DEG or preRanked gsea?
gsea deg written 2.2 years ago by Shamim Sarhadi • 200 • updated 2.2 years ago by John ♦ 12k
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