Showing: depthreset
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what is the conventional apporach to calculate depth of coverage?
wgs dnaseq coverage snp depth written 16 days ago by serpalma.v10 • updated 16 days ago by finswimmer5.4k
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How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 4.3 years ago by krithika.gu230 • updated 10 weeks ago by Fred073030
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Tool: mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
exome wgs depth coverage tool written 7 months ago by brentp22k • updated 7 months ago by ATpoint7.5k
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Depth of Coverage - Calculated Per Probe / Bed Region
bed bam tool depth written 8 months ago by jnowacki60 • updated 8 months ago by Kevin Blighe28k
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extracting depth info from vcf
vcf ad depth written 10 months ago by victoria_aleks30
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What exactly is sequencing depth in RNAseq?
rna-seq depth written 10 months ago by carmacae10 • updated 10 months ago by Charles Plessy2.5k
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Coverage analysis of NGS data by Depth
ngs panels coverage depth written 14 months ago by nilakshafreezon110 • updated 13 months ago by lethanhx2k10
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Filter SNPs on depth
filter depth vcftools snp mindp written 15 months ago by Covux10 • updated 15 months ago by Istvan Albert ♦♦ 77k
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How does coverage of all contigs varies?
reads ngs coverage depth written 18 months ago by BioGeek130 • updated 18 months ago by h.mon19k
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Difference between samtools DEPTH and MPILEUP
reads samtools chip-seq mpileup depth written 23 months ago by ariel.balter130 • updated 23 months ago by Devon Ryan84k
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How to use bedtools coverage
bedtools chip-seq coverage depth written 2.0 years ago by ariel.balter130 • updated 2.0 years ago by Devon Ryan84k
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How to get per sample read depth from VCF with no DP field
vcf coverage depth written 2.3 years ago by Rubal200 • updated 2.3 years ago by chen1.7k
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samtools depth -a while removing duplicates
samtools depth written 2.5 years ago by QVINTVS_FABIVS_MAXIMVS2.1k • updated 2.5 years ago by winter_li40
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Depth of coverage for specific target from bam file
coverage depth written 3.2 years ago by jfjiang10 • updated 3.2 years ago by Jorge Amigo11k
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1000G high coverage depth of sequencing?
1000g depth coverage sequencing written 3.3 years ago by Tommy Carstensen150 • updated 3.3 years ago by Adam970
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relationship between coverage and expression level in RNAseq
depth experiment design rna-seq expression written 3.5 years ago by shl198340 • updated 3.5 years ago by Gary450
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per bp depth intersected with gff file
bedtools bam coverage depth written 3.5 years ago by Biomonika (Noolean)3.0k • updated 3.5 years ago by Devon Ryan84k
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CNV by read_depth approach
R normalization cnv depth written 3.5 years ago by Anon0
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GO terms depth level
gene ontology go depth written 3.9 years ago by ncl.lazzarini90 • updated 3.9 years ago by Pierre Lindenbaum112k
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