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<prev • 137 results • page 1 of 5 • next >
3
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2
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127
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2
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How to input data for DESeq2 from individual HTSeq count?
htseq deseq2 deseq rna-seq written 4 days ago by sudu87 • 0 • updated 3 days ago by poojasethiya • 60
7
votes
1
answer
1.1k
views
1
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Why can't I replicate DESeq's Log2FC calculation?
rnaseq deseq2 deseq rna-seq written 2.7 years ago by Kristin Muench • 310 • updated 25 days ago by RamRS ♦ 18k
0
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0
answers
88
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0
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[DESeq] Collapsing replicate across sequencing batches?
deseq rna-seq written 27 days ago by Kristin Muench • 310
2
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1
answer
514
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5 follow
1
answer
DEseq three-group comparison
deseq differential expression analysis rna-seq written 4 months ago by duvaller • 10 • updated 4 weeks ago by RamRS ♦ 18k
2
votes
1
answer
171
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1
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Issue with DESeq: unable to find an inherited method for function (exprs) for signature DESeqTransform
R deseq rna-seq written 5 weeks ago by catglen012 • 0 • updated 5 weeks ago by WouterDeCoster ♦ 32k
4
votes
1
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227
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1
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how merge the gene expression value of two sample
deseq rna-seq gene-expression written 7 weeks ago by lkianmehr • 10 • updated 7 weeks ago by genomax ♦ 57k
8
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0
answers
280
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0
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Can I convert normalized counts from DESEQ2 into fpkm?
normalization fpkm deseq rna-seq written 10 weeks ago by nanoide • 10
1
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0
answers
198
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0
answers
DESEQ2 application on control vs treatment
deseq nanostring written 11 weeks ago by bioinfonerd • 10
4
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1
answer
262
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1
answer
Questions regarding VST/rlog correction to plot sample distances between RNA-seq samples
R deseq rna-seq written 12 weeks ago by salamandra • 170 • updated 12 weeks ago by Kevin Blighe ♦ 30k
5
votes
1
answer
138
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1
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Does importing HTseqcounts with txtimport corrects for gene length?
R deseq rna-seq written 12 weeks ago by salamandra • 170 • updated 12 weeks ago by Devon Ryan ♦ 85k
0
votes
1
answer
177
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1
answer
DE seq analysis using transcript expression data
deseq transcript written 3 months ago by shivangi.agarwal800 • 30 • updated 3 months ago by doctor.dee005 • 170
2
votes
1
answer
307
views
1
answer
Plot LFC with pheatmap of differentially expressed gene list from DESeq2.
heatmap pheatmap deseq2 deseq written 3 months ago by megannj • 10 • updated 3 months ago by Devon Ryan ♦ 85k
3
votes
1
answer
366
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1
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Differential Expression of a normalized RNAseq expression dataset
glioblastoma R tcga deseq rna-seq written 6 months ago by Arko • 10 • updated 6 months ago by Kevin Blighe ♦ 30k
0
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1
answer
334
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1
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Prefiltering gene lists and DESeq
R deseq rna-seq written 6 months ago by jjrin • 10 • updated 6 months ago by h.mon ♦ 20k
15
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2
answers
565
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2
answers
converting RSEM bam output into sam files for DEseq?
sam bam deseq rsem rna-seq written 7 months ago by Sepd • 0
2
votes
1
answer
516
views
1
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Why are DESeq2 size factors not null in case of sparse count matrix?
deseq2 deseq rna-seq written 8 months ago by holgerbrandl • 10 • updated 8 months ago by Kevin Blighe ♦ 30k
4
votes
0
answers
257
views
0
answers
Error in my DESeq script
R deseq rna-seq written 8 months ago by sandKings • 10
13
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4
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851
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5 follow
4
answers
Is it appropriate to assume genes of similar expression level also have similar variance?
differential-expression deseq written 9 months ago by -_- • 680 • updated 9 months ago by Santosh Anand • 4.0k
3
votes
2
answers
576
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2
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Subsetting DESeq2 results by padj quantity
R deseq2 deseq written 9 months ago by rbronste • 170 • updated 9 months ago by mbk0asis • 380
0
votes
0
answers
366
views
0
answers
Multifactor design result extraction in voom limma
voom deseq2 limma deseq written 10 months ago by aarthir239 • 0
10
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1
answer
844
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5 follow
1
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 10 months ago by ThePresident • 100 • updated 10 months ago by WouterDeCoster ♦ 32k
5
votes
1
answer
970
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1
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sleuth vs deseq2
deseq2 deseq rna-seq written 10 months ago by Mozart • 50 • updated 10 months ago by Kevin Blighe ♦ 30k
0
votes
0
answers
627
views
0
answers
Pairwise comparisons in Differential Expression
deseq rna-seq written 11 months ago by Ron • 820
5
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1
answer
609
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1
answer
Zero read count with deseq2
rnaseq deseq2 deseq differential expression written 11 months ago by scamiolo • 10 • updated 11 months ago by WouterDeCoster ♦ 32k
0
votes
1
answer
465
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1
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Asymmetric Differential Expression
R deseq2 deseq rna-seq edger written 11 months ago by gaber898 • 0 • updated 11 months ago by Kevin Blighe ♦ 30k
0
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1
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517
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1
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Accessing RPM from DESeq2
deseq rna-seq written 11 months ago by sjj2121 • 0 • updated 11 months ago by ATpoint ♦ 8.0k
14
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1
answer
11k
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5 follow
1
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R DESeq: What exactly is Variance Stabilizating Transformation?
R deseq vst written 4.2 years ago by komal.rathi • 3.2k
14
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2
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13k
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12 follow
2
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rRNA Removal In Rna-Seq Data
deseq rna-seq written 4.9 years ago by jockbanan • 370 • updated 11 months ago by h.mon ♦ 20k
3
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1
answer
861
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1
answer
DESeq2 unequal sample sizes
R deseq2 deseq written 13 months ago by glados • 20 • updated 13 months ago by Kevin Blighe ♦ 30k
3
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1
answer
642
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1
answer
Differential expressed genes in DESeq
expression rna deseq rna-seq written 13 months ago by Lila M • 390 • updated 13 months ago by Devon Ryan ♦ 85k
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