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3
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1
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1.1k
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6 follow
1
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DEseq three-group comparison
deseq differential expression analysis rna-seq written 8 months ago by duvaller • 10 • updated 8 days ago by sdbaney • 0
3
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1
answer
101
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1
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Selecting methods for performing pairwise RNAseq analysis without replicates
tissues deseq2 deseq rna-seq hisat2 written 9 days ago by bioinforesearchquestions • 200 • updated 9 days ago by i.sudbery ♦ 3.8k
1
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1
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80
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1
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Unequally pooling libraries for RNAseq?
deseq rna-seq sequencing written 14 days ago by jingjin2203 • 0 • updated 14 days ago by shawn.w.foley • 190
2
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2
answers
148
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2
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Compare samples from bacterial genome
metagenomics deseq written 10 weeks ago by David • 140
0
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0
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180
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0
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DGE Analysis between 3 conditions
deseq rna-seq edger written 11 weeks ago by prabin.dm • 30
3
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0
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279
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0
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featurecounts and DESEQ
bowtie2 featurecount deseq mirna written 3 months ago by anjuraas • 10
4
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2
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422
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5 follow
2
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Handling biological replicates across batches in DESeq2
R deseq2 deseq rna-seq written 3 months ago by Kristin Muench • 350
9
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2
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739
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7 follow
2
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How to input data for DESeq2 from individual HTSeq count?
htseq deseq2 deseq rna-seq written 4 months ago by sudu87 • 10 • updated 4 months ago by poojasethiya • 80
7
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1
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1.2k
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1
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Why can't I replicate DESeq's Log2FC calculation?
rnaseq deseq2 deseq rna-seq written 3.0 years ago by Kristin Muench • 350 • updated 5 months ago by RamRS ♦ 20k
0
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0
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187
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0
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[DESeq] Collapsing replicate across sequencing batches?
deseq rna-seq written 5 months ago by Kristin Muench • 350
2
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1
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390
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1
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Issue with DESeq: unable to find an inherited method for function (exprs) for signature DESeqTransform
R deseq rna-seq written 5 months ago by catglen012 • 0 • updated 5 months ago by WouterDeCoster ♦ 36k
4
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1
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356
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1
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how merge the gene expression value of two sample
deseq rna-seq gene-expression written 5 months ago by lkianmehr • 30 • updated 5 months ago by genomax ♦ 62k
8
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0
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604
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0
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Can I convert normalized counts from DESEQ2 into fpkm?
normalization fpkm deseq rna-seq written 6 months ago by nanoide • 10
5
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1
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382
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5 follow
1
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DESEQ2 application on control vs treatment
deseq nanostring written 7 months ago by bioinfonerd • 30
4
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1
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498
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1
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Questions regarding VST/rlog correction to plot sample distances between RNA-seq samples
R deseq rna-seq written 7 months ago by salamandra • 180 • updated 7 months ago by Kevin Blighe ♦ 37k
5
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1
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227
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1
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Does importing HTseqcounts with txtimport corrects for gene length?
R deseq rna-seq written 7 months ago by salamandra • 180 • updated 7 months ago by Devon Ryan ♦ 88k
0
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1
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273
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1
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DE seq analysis using transcript expression data
deseq transcript written 7 months ago by shivangi.agarwal800 • 40 • updated 7 months ago by Dattatray Mongad • 250
3
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1
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644
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1
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Plot LFC with pheatmap of differentially expressed gene list from DESeq2.
heatmap pheatmap deseq2 deseq written 7 months ago by megannj • 10 • updated 7 months ago by Devon Ryan ♦ 88k
3
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1
answer
495
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1
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Differential Expression of a normalized RNAseq expression dataset
glioblastoma R tcga deseq rna-seq written 10 months ago by Arko • 10 • updated 10 months ago by Kevin Blighe ♦ 37k
0
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1
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474
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1
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Prefiltering gene lists and DESeq
R deseq rna-seq written 11 months ago by jjrin • 10 • updated 11 months ago by h.mon ♦ 23k
15
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2
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793
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2
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converting RSEM bam output into sam files for DEseq?
sam bam deseq rsem rna-seq written 11 months ago by Sepd • 0
2
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1
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698
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1
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Why are DESeq2 size factors not null in case of sparse count matrix?
deseq2 deseq rna-seq written 12 months ago by holgerbrandl • 30 • updated 12 months ago by Kevin Blighe ♦ 37k
4
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0
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351
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0
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Error in my DESeq script
R deseq rna-seq written 12 months ago by sandKings • 10
13
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4
answers
1.1k
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5 follow
4
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Is it appropriate to assume genes of similar expression level also have similar variance?
differential-expression deseq written 13 months ago by -_- • 740 • updated 13 months ago by Santosh Anand ♦ 4.6k
3
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2
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781
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2
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Subsetting DESeq2 results by padj quantity
R deseq2 deseq written 14 months ago by rbronste • 230 • updated 14 months ago by mbk0asis • 410
0
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0
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457
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0
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Multifactor design result extraction in voom limma
voom deseq2 limma deseq written 14 months ago by aarthir239 • 0
10
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1
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1.0k
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5 follow
1
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 15 months ago by ThePresident • 100 • updated 15 months ago by WouterDeCoster ♦ 36k
5
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1
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1.3k
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1
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sleuth vs deseq2
deseq2 deseq rna-seq written 15 months ago by Mozart • 80 • updated 15 months ago by Kevin Blighe ♦ 37k
0
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0
answers
842
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0
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Pairwise comparisons in Differential Expression
deseq rna-seq written 15 months ago by Ron • 870
5
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1
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759
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1
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Zero read count with deseq2
rnaseq deseq2 deseq differential expression written 15 months ago by scamiolo • 10 • updated 15 months ago by WouterDeCoster ♦ 36k
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