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<prev • 171 results • page 1 of 6 • next >
0
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56
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1
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Can I use pseudocounts for differential abundance of OTUs?
deseq written 5 days ago by dpc • 140 • updated 5 days ago by antonioggsousa • 830
7
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1
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4.0k
views
10 follow
1
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DEseq three-group comparison
deseq differential expression analysis rna-seq written 2.2 years ago by duvaller • 30 • updated 12 days ago by enquiry.ticacademy • 0
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0
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70
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0
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Graphing timecourse data from DESeq2
deseq written 18 days ago by swbarnes2 ♦ 8.1k
2
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0
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127
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0
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Is it possible to identify different expressed genes by using TPM?
tpm deseq rna-seq written 19 days ago by taylor • 0 • updated 19 days ago by Shalu Jhanwar • 350
1
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1
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84
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1
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Error when running DESeq2 in Galaxy
differential galaxy deseq rna-seq written 28 days ago by noran • 0
4
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0
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96
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0
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Error in example RNA-Seq Example
R deseq rna-seq handbook written 29 days ago by lextallan • 10
0
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1
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139
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1
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Interaction Factors Removing All Variability
R deseq2 deseq rna-seq written 3 months ago by tyak9569 • 0 • updated 4 weeks ago by antonioggsousa • 830
1
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0
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114
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0
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Problem with DESeq package: ncol(countData) == nrow(colData) is not TRUE
R deseq rstudio rna-seq written 5 weeks ago by lmck0705 • 0
5
votes
1
answer
117
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5 follow
1
answer
<DESeqDataSet>[i,] index out of bounds - subsetting DESeqDataSet
deseq written 6 weeks ago by mbk0asis • 550
3
votes
2
answers
138
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2
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Genes vs transcripts in RNA-seq analysis
R deseq2 deseq rna-seq kallisto written 8 weeks ago by rstepien095 • 0 • updated 8 weeks ago by caggtaagtat • 1.1k
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0
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123
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0
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Batch effect correction for RNAseq visualization
R tpm deseq rna-seq batch written 11 weeks ago by fbleao • 0
6
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2
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4.1k
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2
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Combining RNA seq and H3K27ac ChIP seq data
h3k27ac chip-seq deseq rna-seq manorm written 4.1 years ago by thomasterTW • 20 • updated 3 months ago by Biostar ♦♦ 20
2
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0
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138
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0
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DEseq on mixed cohort with and without replicates
deseq rna-seq written 4 months ago by 5utr • 350
3
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1
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1.4k
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1
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RNA Seq: Differential expression model formula
R deseq rna-seq edger written 4.1 years ago by rmf • 950 • updated 4 months ago by Biostar ♦♦ 20
1
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0
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295
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0
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Converting REFSeq IDs to Entrez IDs for KEGG analysis - "geneid of incorrect length"?
R deseq kegg edger rna-seq written 9 months ago by saw44 • 10 • updated 6 months ago by Biostar ♦♦ 20
3
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1
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3.0k
views
1
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analysing RNASeq with spike-In
normalization spike-in de genes deseq written 5.2 years ago by Assa Yeroslaviz • 1.3k • updated 7 months ago by Biostar ♦♦ 20
1
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0
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420
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5 follow
0
answers
DESeq model design
deseq rna-seq written 8 months ago by ika • 30
2
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3
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369
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3
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Advice on DE analysis of mouse and human merged RNA-seq data
mouse deseq human rna-seq written 10 months ago by Adrian Pelin • 2.4k • updated 9 months ago by swbarnes2 ♦ 8.1k
0
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1
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783
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1
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DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of time series data with housekeeping gene counts
rnaseq R deseq2 deseq written 9 months ago by AnonymousEngineer • 0 • updated 9 months ago by ATpoint ♦ 36k
1
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1
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236
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1
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RNA-seq Differentially expressed genes analysis when there's no control treatment and we just have multiple HKGs
wgcna housekeeping genes (hkgs) deseq rna-seq written 9 months ago by mjavad2012 • 0 • updated 9 months ago by swbarnes2 ♦ 8.1k
4
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2
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579
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7 follow
2
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cutoff for expressed genes in DESeq2
deseq rna-seq written 9 months ago by olechnwin • 30 • updated 9 months ago by swbarnes2 ♦ 8.1k
0
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0
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223
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0
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Ascend runDESeq() not finding factors
deseq ascend rna-seq written 11 months ago by cf556 • 10 • updated 10 months ago by Biostar ♦♦ 20
0
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0
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210
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0
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Dispersion shrinkage in DESeq2: LOESS instead of negative binomial based GLM?
deseq rna-seq written 10 months ago by CY • 510
2
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1
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4.8k
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6 follow
1
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Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 6.5 years ago by hoangtv • 30 • updated 11 months ago by Biostar ♦♦ 20
0
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1
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302
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1
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Merge DEseq and Cufflinks outputs
cufflinks degs deseq rna-seq written 12 months ago by Lissa Cruz Saavedra • 0
1
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0
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1.9k
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0
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DESeq2 with different replicates
deseq rna-seq different replicate written 4.5 years ago by robertorun • 0 • updated 12 months ago by Biostar ♦♦ 20
11
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2
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1.7k
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8 follow
2
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How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 12 months ago by zhaoliang0302 • 0 • updated 12 months ago by kristoffer.vittingseerup • 3.4k
1
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1
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633
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1
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DEseq results -- foldchange is 0/inf
deseq rna-seq written 12 months ago by Nan • 0 • updated 12 months ago by Chirag Parsania • 1.8k
0
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0
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565
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0
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Error in DESeq analysis directory argument - No such file or directory
deseq rna-seq hts written 14 months ago by AW • 0
0
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2
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707
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2
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Sanity Check on RNA-Seq featureCounts / DESeq2
featurecounts deseq rna-seq written 15 months ago by gwebste7 • 0 • updated 15 months ago by Michael Dondrup ♦ 47k
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