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<prev • 107 results • page 1 of 4 • next >
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FPKM vs READ COUNT
normalization ngs deseq rna-seq written 6 weeks ago by avinashdhar123 • 0 • updated 6 weeks ago by Devon Ryan ♦ 68k
2
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1
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150
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Why DESeq2 in parallel mode is slower than normal?!
parallel deseq rna-seq differential expression written 7 weeks ago by ilikebing2000 • 40 • updated 7 weeks ago by Michael Love • 1.4k
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145
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Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
deseq vst written 3 months ago by jiab • 10
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137
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How to annotate gene name on a differential read count plot by DESeq2?
R deseq rna-seq differential rnaseq written 4 months ago by tw30282 • 10
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1
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224
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How to turn a FPKM table in a matrix that can be analyzed in R?
R fpkm deseq rna-seq matrix written 4 months ago by JimiOli • 0 • updated 4 months ago by Carlo Yague • 3.0k
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169
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Comparing two differential expression experiments
deseq differential expression written 5 months ago by user31888 • 20
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240
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2
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Differences between Counts and FPKMS
next-gen differential-expression deseq rna-seq written 5 months ago by Ron • 600 • updated 5 months ago by Rob ♦ 2.0k
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2
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425
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2
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DESeq2 - how to build design for multiple paired samples before/after with 2 conditions? (non-crossover)
paired samples deseq2 deseq written 5 months ago by jahorst • 0
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259
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Deseq covariates with interaction
deseq written 5 months ago by runnerbio88 • 50
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247
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compare rows of colData and count Matrix
dexseq matrix deseq written 6 months ago by Assa Yeroslaviz • 1.1k
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2
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2
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Count Tables For Deseq [After Alignreads.Pl (Trinity)]
trinity deseq written 4.8 years ago by lzsph • 70 • updated 6 months ago by satomuraatsushi • 0
2
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1
answer
294
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1
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Normalisation of RNA-seq for different RNA biotypes
deseq rna-seq written 7 months ago by Nathaniel • 40 • updated 7 months ago by Devon Ryan ♦ 68k
3
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1
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281
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1
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Identifying DEG from time course data without condition
deseq edger rna-seq written 7 months ago by ChIP • 470 • updated 7 months ago by b.nota • 3.5k
2
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1
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395
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1
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Microarray Data Analysis using DEseq2
deseq microarray written 7 months ago by shashank.jatav • 10 • updated 7 months ago by WouterDeCoster ♦ 20k
3
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1
answer
266
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1
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How should I define contrast with more than 2 levels in DESeq2 ?
bioinformatics deseq rna-seq written 8 months ago by star • 40 • updated 8 months ago by abc • 30
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1
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461
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1
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Remove batch effect for differential expression
R next-gen deseq rna-seq written 8 months ago by Ron • 600 • updated 8 months ago by WouterDeCoster ♦ 20k
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2
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3.0k
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Estimating Dispersions In Deseq: Which Is Best, All Conditions At Once, Or Each Condition Comparison Individually?
R bioconductor deseq rna-seq edger written 4.2 years ago by carmeyeii89 • 140 • updated 9 months ago by Biostar ♦♦ 20
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1
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297
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1
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Specifying model in DESeq - differentiation experiment
experimental design deseq2 deseq rna-seq written 9 months ago by Nathan • 0 • updated 9 months ago by Carlo Yague • 3.0k
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2
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616
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2
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error after DESeq function nbinomTest with only one replicate
no replicates nbinomtest deseq error written 11 months ago by anne.leinweber • 0 • updated 10 months ago by Chris Cole • 630
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2
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496
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2
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Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 11 months ago by camelbbs • 580 • updated 11 months ago by i.sudbery • 1.3k
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306
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1
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Model Matrix Design - Replicates Within and Between Batches
model replicate model matrix deseq written 11 months ago by adamlangenbucher • 0 • updated 11 months ago by russhh • 2.5k
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299
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wrong heatmap with only two solid colors
forum ggplot2 deseq rna-seq heatmap written 12 months ago by shilpi.singh2811 • 0 • updated 12 months ago by WouterDeCoster ♦ 20k
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2
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Combining RNA seq and H3K27ac ChIP seq data
h3k27ac chip-seq deseq rna-seq manorm written 13 months ago by thomasterTW • 20 • updated 12 months ago by tangming2005 • 2.1k
3
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420
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1
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RNA Seq: Differential expression model formula
R deseq rna-seq edger written 13 months ago by rmf • 70 • updated 13 months ago by Devon Ryan ♦ 68k
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527
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How to make a barplot with error bars of counts from one gene between 2 conditions from DESeq2 data
R ggplot rna-seq graph deseq written 13 months ago by mmrcksn • 50
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1
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analysing RNASeq with spike-In
normalization spike-in de genes deseq written 2.2 years ago by Assa Yeroslaviz • 1.1k • updated 13 months ago by Biostar ♦♦ 20
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655
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Signature genes from RNA-seq time series (Developmental)
rna-seq edger deseq written 13 months ago by Dataminer • 2.5k
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315
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DEseq matrix preparation
R deseq written 14 months ago by Learner • 70
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1
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Are different colonies from the same cell line valid biological replicates for DESeq 2?
R deseq2 deseq rna-seq sequencing written 2.1 years ago by gaelgarcia • 50 • updated 15 months ago by Biostar ♦♦ 20
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1
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687
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1
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DEseq2 analysis with 2 treatments, 8 timepoints and no replicates
R no replicates deseq rna-seq written 16 months ago by natsterbug • 0 • updated 15 months ago by russhh • 2.5k
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