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<prev • 160 results • page 1 of 6 • next >
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DESeq model design
deseq rna-seq written 18 days ago by ika • 10
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Converting REFSeq IDs to Entrez IDs for KEGG analysis - "geneid of incorrect length"?
R deseq kegg edger rna-seq written 5 weeks ago by saw44 • 10 • updated 5 weeks ago by Ashastry • 60
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3
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Advice on DE analysis of mouse and human merged RNA-seq data
mouse deseq human rna-seq written 12 weeks ago by Adrian Pelin • 2.3k • updated 6 weeks ago by swbarnes2 ♦ 7.0k
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DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of time series data with housekeeping gene counts
rnaseq R deseq2 deseq written 8 weeks ago by AnonymousEngineer • 0 • updated 8 weeks ago by ATpoint ♦ 26k
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RNA-seq Differentially expressed genes analysis when there's no control treatment and we just have multiple HKGs
wgcna housekeeping genes (hkgs) deseq rna-seq written 9 weeks ago by mjavad2012 • 0 • updated 9 weeks ago by swbarnes2 ♦ 7.0k
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179
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7 follow
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cutoff for expressed genes in DESeq2
deseq rna-seq written 9 weeks ago by olechnwin • 20 • updated 9 weeks ago by swbarnes2 ♦ 7.0k
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Ascend runDESeq() not finding factors
deseq ascend rna-seq written 4 months ago by cf556 • 0 • updated 11 weeks ago by Biostar ♦♦ 20
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Dispersion shrinkage in DESeq2: LOESS instead of negative binomial based GLM?
deseq rna-seq written 3 months ago by CY • 460
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Large Variation In Rpkm Values Of Different Biological Replicates From Cufflinks
replicates rpkm cufflinks deseq written 5.8 years ago by hoangtv • 30 • updated 3 months ago by Biostar ♦♦ 20
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Merge DEseq and Cufflinks outputs
cufflinks degs deseq rna-seq written 4 months ago by Lissa Cruz Saavedra • 0
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DESeq2 with different replicates
deseq rna-seq different replicate written 3.8 years ago by robertorun • 0 • updated 4 months ago by Biostar ♦♦ 20
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8 follow
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How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 5 months ago by zhaoliang0302 • 0 • updated 5 months ago by kristoffer.vittingseerup • 2.9k
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DEseq results -- foldchange is 0/inf
deseq rna-seq written 5 months ago by Nan • 0 • updated 5 months ago by Chirag Parsania • 1.7k
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Error in DESeq analysis directory argument - No such file or directory
deseq rna-seq hts written 6 months ago by AW • 0
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Sanity Check on RNA-Seq featureCounts / DESeq2
featurecounts deseq rna-seq written 7 months ago by gwebste7 • 0 • updated 7 months ago by Michael Dondrup ♦ 47k
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Is right normalize metabolomics "counts" by Variance Stabilized Transformation using VST DESeq2 package function?
metabolomics R deseq vst written 9 months ago by panconchoclo • 10 • updated 7 months ago by Biostar ♦♦ 20
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LogFC calculation in multiple comparisons
rna-seq edger deseq written 7 months ago by elb • 170 • updated 7 months ago by RamRS ♦ 25k
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How can I analyze this data in Deseq?
rnaseq R deseq2 deseq written 8 months ago by MAPK • 1.5k
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Help defining contrasts in DESeq.
R contrasts deseq written 9 months ago by ariel.balter • 140
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6 follow
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DEseq three-group comparison
deseq differential expression analysis rna-seq written 18 months ago by duvaller • 10 • updated 10 months ago by sdbaney • 0
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Selecting methods for performing pairwise RNAseq analysis without replicates
tissues deseq2 deseq rna-seq hisat2 written 10 months ago by bioinforesearchquestions • 270 • updated 10 months ago by i.sudbery ♦ 6.4k
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Unequally pooling libraries for RNAseq?
deseq rna-seq sequencing written 10 months ago by jingjin2203 • 40 • updated 10 months ago by shawn.w.foley • 1.1k
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Compare samples from bacterial genome
metagenomics deseq written 12 months ago by David • 160
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DGE Analysis between 3 conditions
deseq rna-seq edger written 12 months ago by prabin.dm • 160
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featurecounts and DESEQ
bowtie2 featurecount deseq mirna written 12 months ago by anjuraas • 10
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5 follow
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Handling biological replicates across batches in DESeq2
R deseq2 deseq rna-seq written 13 months ago by Kristin Muench • 470
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9 follow
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How to input data for DESeq2 from individual HTSeq count?
htseq deseq2 deseq rna-seq written 14 months ago by sudu87 • 20 • updated 14 months ago by poojasethiya • 80
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Why can't I replicate DESeq's Log2FC calculation?
rnaseq deseq2 deseq rna-seq written 3.8 years ago by Kristin Muench • 470 • updated 14 months ago by RamRS ♦ 25k
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[DESeq] Collapsing replicate across sequencing batches?
deseq rna-seq written 14 months ago by Kristin Muench • 470
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Issue with DESeq: unable to find an inherited method for function (exprs) for signature DESeqTransform
R deseq rna-seq written 15 months ago by catglen012 • 10 • updated 15 months ago by WouterDeCoster ♦ 42k
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