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<prev • 181 results • page 1 of 7 • next >
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Error massage when instantiating DEseq Dataset
R differential expression sizefactors deseq written 16 days ago by anthonyimhez • 20 • updated 16 days ago by ATpoint ♦ 44k
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DESEq2 error - 'DESeqDataSet' object superclass 'RectangularData' not defined in the environment of the object's class
R deseq2 deseq written 21 days ago by susheelbhanu • 0 • updated 21 days ago by Kevin Blighe ♦ 69k
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6 follow
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Error: Every gene contains at least one zero, cannot compute log geometric means
R bioconductor deseq rna-seq written 7 months ago by imrankhanbioinfo • 30 • updated 6 weeks ago by el24 • 10
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Benchmarking DESeq / EdgeR / LIMMA vs Lasso vs RF
lasso limma deseq edger rf written 3 months ago by fr • 150 • updated 7 weeks ago by Biostar ♦♦ 20
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DESeq2 design for differential expression- 2 groups, 4 time points
R deseq rna-seq written 8 weeks ago by dani.tom • 0
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summarizeOverlaps warning A. thaliana differential expression
software error R deseq rna-seq written 3 months ago by eva.lucarelli • 0 • updated 3 months ago by _r_am ♦ 32k
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Comparing two differential expression experiments
deseq differential expression written 3.9 years ago by user31888 • 100 • updated 3 months ago by Biostar ♦♦ 20
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7 follow
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Differences between PCA plots in DESeq and FactoMineR
R pca deseq factominer written 4 months ago by caitlin.mcandry • 0
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2
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RNA-SEQ where only a subset of genes is of interest
deseq rna-seq written 4 months ago by Sam • 120 • updated 4 months ago by swbarnes2 ♦ 9.4k
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241
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R design on 2-way interaction not displaying all options
modeling design limma edger deseq written 5 months ago by fr • 150
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196
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Assessing controls for RNASeq
gene expression deseq rna-seq written 5 months ago by lockdowndog • 0 • updated 5 months ago by i.sudbery ♦ 10k
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Can I use pseudocounts for differential abundance of OTUs?
deseq written 5 months ago by dpc • 150 • updated 5 months ago by antonioggsousa • 1.9k
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12 follow
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DEseq three-group comparison
deseq differential expression analysis rna-seq written 2.6 years ago by duvaller • 40 • updated 6 months ago by enquiry.ticacademy • 0
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Graphing timecourse data from DESeq2
deseq written 6 months ago by swbarnes2 ♦ 9.4k
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Is it possible to identify different expressed genes by using TPM?
tpm deseq rna-seq written 6 months ago by taylor • 0 • updated 6 months ago by Shalu Jhanwar • 480
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Error when running DESeq2 in Galaxy
differential galaxy deseq rna-seq written 6 months ago by noran • 0
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233
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Error in example RNA-Seq Example
R deseq rna-seq handbook written 6 months ago by lextallan • 10
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Interaction Factors Removing All Variability
R deseq2 deseq rna-seq written 8 months ago by tyak9569 • 0 • updated 6 months ago by antonioggsousa • 1.9k
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Problem with DESeq package: ncol(countData) == nrow(colData) is not TRUE
R deseq rstudio rna-seq written 6 months ago by lmck0705 • 0
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5 follow
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<DESeqDataSet>[i,] index out of bounds - subsetting DESeqDataSet
deseq written 7 months ago by mbk0asis • 590
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Genes vs transcripts in RNA-seq analysis
R deseq2 deseq rna-seq kallisto written 7 months ago by rstepien095 • 0 • updated 7 months ago by caggtaagtat • 1.4k
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Batch effect correction for RNAseq visualization
R tpm deseq rna-seq batch written 8 months ago by fbleao • 0
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Combining RNA seq and H3K27ac ChIP seq data
h3k27ac chip-seq deseq rna-seq manorm written 4.6 years ago by thomasterTW • 20 • updated 9 months ago by Biostar ♦♦ 20
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187
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DEseq on mixed cohort with and without replicates
deseq rna-seq written 10 months ago by 5utr • 350
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RNA Seq: Differential expression model formula
R deseq rna-seq edger written 4.6 years ago by rmf • 1.0k • updated 10 months ago by Biostar ♦♦ 20
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Converting REFSeq IDs to Entrez IDs for KEGG analysis - "geneid of incorrect length"?
R deseq kegg edger rna-seq written 14 months ago by saw44 • 10 • updated 12 months ago by Biostar ♦♦ 20
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analysing RNASeq with spike-In
normalization spike-in de genes deseq written 5.7 years ago by Assa Yeroslaviz • 1.4k • updated 13 months ago by Biostar ♦♦ 20
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5 follow
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DESeq model design
deseq rna-seq written 14 months ago by ika • 40
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3
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Advice on DE analysis of mouse and human merged RNA-seq data
mouse deseq human rna-seq written 16 months ago by Adrian Pelin • 2.4k • updated 14 months ago by swbarnes2 ♦ 9.4k
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DESeq2: (1) Comparing multiple groups using a for loop & (2) normalization of time series data with housekeeping gene counts
rnaseq R deseq2 deseq written 15 months ago by AnonymousEngineer • 0 • updated 15 months ago by ATpoint ♦ 44k
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