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<prev • 126 results • page 1 of 5 • next >
3
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1
answer
126
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1
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Differential Expression of a normalized RNAseq expression dataset
glioblastoma R tcga deseq rna-seq written 8 days ago by Arko • 10 • updated 7 days ago by Kevin Blighe ♦ 17k
0
votes
1
answer
122
views
1
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Prefiltering gene lists and DESeq
R deseq rna-seq written 27 days ago by jjrin • 10 • updated 27 days ago by h.mon ♦ 13k
15
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2
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213
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2
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converting RSEM bam output into sam files for DEseq?
sam bam deseq rsem rna-seq written 5 weeks ago by Sepd • 0
2
votes
1
answer
244
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1
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Why are DESeq2 size factors not null in case of sparse count matrix?
deseq2 deseq rna-seq written 9 weeks ago by holgerbrandl • 10 • updated 9 weeks ago by Kevin Blighe ♦ 17k
4
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0
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156
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0
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Error in my DESeq script
R deseq rna-seq written 10 weeks ago by sandKings • 10
13
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4
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532
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5 follow
4
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Is it appropriate to assume genes of similar expression level also have similar variance?
differential-expression deseq written 3 months ago by -_- • 570 • updated 3 months ago by Santosh Anand • 3.4k
3
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2
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337
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2
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Subsetting DESeq2 results by padj quantity
R deseq2 deseq written 3 months ago by rbronste • 160 • updated 3 months ago by mbk0asis • 320
0
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0
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245
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0
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Multifactor design result extraction in voom limma
voom deseq2 limma deseq written 4 months ago by aarthir239 • 0
9
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1
answer
410
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1
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 4 months ago by ThePresident • 90 • updated 4 months ago by WouterDeCoster ♦ 27k
5
votes
1
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479
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1
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sleuth vs deseq2
deseq2 deseq rna-seq written 5 months ago by Mozart • 40 • updated 5 months ago by Kevin Blighe ♦ 17k
0
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0
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333
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0
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Pairwise comparisons in Differential Expression
deseq rna-seq written 5 months ago by Ron • 720
5
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1
answer
367
views
1
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Zero read count with deseq2
rnaseq deseq2 deseq differential expression written 5 months ago by scamiolo • 10 • updated 5 months ago by WouterDeCoster ♦ 27k
0
votes
1
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326
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1
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Asymmetric Differential Expression
R deseq2 deseq rna-seq edger written 5 months ago by gaber898 • 0 • updated 5 months ago by Kevin Blighe ♦ 17k
0
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1
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304
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1
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Accessing RPM from DESeq2
deseq rna-seq written 5 months ago by sjj2121 • 0 • updated 5 months ago by ATpoint • 3.5k
12
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1
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10.0k
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5 follow
1
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R DESeq: What exactly is Variance Stabilizating Transformation?
R deseq vst written 3.7 years ago by komal.rathi • 3.1k
14
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2
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12k
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12 follow
2
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rRNA Removal In Rna-Seq Data
deseq rna-seq written 4.4 years ago by jockbanan • 370 • updated 6 months ago by h.mon ♦ 13k
2
votes
1
answer
507
views
1
answer
DESeq2 unequal sample sizes
R deseq2 deseq written 7 months ago by glados • 20 • updated 7 months ago by Kevin Blighe ♦ 17k
3
votes
1
answer
430
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1
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Differential expressed genes in DESeq
expression rna deseq rna-seq written 7 months ago by Lila M • 370 • updated 7 months ago by Devon Ryan ♦ 78k
1
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0
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332
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0
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Masking repeats in ATAC-seq data
repeats atac-seq deseq written 7 months ago by rbronste • 160
2
votes
1
answer
742
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1
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Computing TPM from normalized read count from DESEQ
expression mirna deseq genomics rna-seq written 8 months ago by jack • 700 • updated 8 months ago by geek_y ♦ 8.3k
3
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0
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438
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0
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RNA-seq gene expression normalization for independent samples
gene expression deseq rna-seq written 8 months ago by Amos • 0
0
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3
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500
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5 follow
3
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FPKM vs READ COUNT
normalization ngs deseq rna-seq written 10 months ago by avinashdhar123 • 0 • updated 10 months ago by Devon Ryan ♦ 78k
2
votes
1
answer
652
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1
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Why DESeq2 in parallel mode is slower than normal?!
parallel deseq rna-seq differential expression written 10 months ago by ilikebing2000 • 50 • updated 10 months ago by Michael Love • 1.6k
0
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0
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305
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0
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Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
deseq vst written 12 months ago by jiab • 20
0
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0
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352
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0
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How to annotate gene name on a differential read count plot by DESeq2?
R deseq rna-seq differential rnaseq written 13 months ago by tw30282 • 10
2
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1
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629
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1
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How to turn a FPKM table in a matrix that can be analyzed in R?
R fpkm deseq rna-seq matrix written 13 months ago by JimiOli • 0 • updated 13 months ago by Carlo Yague • 3.9k
0
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0
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363
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0
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Comparing two differential expression experiments
deseq differential expression written 14 months ago by user31888 • 20
16
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2
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473
views
2
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Differences between Counts and FPKMS
next-gen differential-expression deseq rna-seq written 14 months ago by Ron • 720 • updated 14 months ago by Rob ♦ 2.3k
0
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2
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926
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2
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DESeq2 - how to build design for multiple paired samples before/after with 2 conditions? (non-crossover)
paired samples deseq2 deseq written 14 months ago by jahorst • 0
1
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2
answers
458
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2
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Deseq covariates with interaction
deseq written 14 months ago by runnerbio88 • 110
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