Showing: deseqreset
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How to turn a FPKM table in a matrix that can be analyzed in R?
R fpkm deseq rna-seq matrix written 9 weeks ago by JimiOli0 • updated 9 weeks ago by Carlo Yague2.9k
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Differences between Counts and FPKMS
next-gen differential-expression deseq rna-seq written 3 months ago by Ron560 • updated 3 months ago by Rob1.7k
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Deseq covariates with interaction
deseq written 3 months ago by runnerbio8850
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Count Tables For Deseq [After Alignreads.Pl (Trinity)]
trinity deseq written 4.7 years ago by lzsph70 • updated 4 months ago by satomuraatsushi0
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Normalisation of RNA-seq for different RNA biotypes
deseq rna-seq written 5 months ago by Nathaniel40 • updated 5 months ago by Devon Ryan66k
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Identifying DEG from time course data without condition
deseq edger rna-seq written 5 months ago by ChIP470 • updated 5 months ago by b.nota3.0k
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Microarray Data Analysis using DEseq2
deseq microarray written 5 months ago by shashank.jatav10 • updated 5 months ago by WouterDeCoster17k
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How should I define contrast with more than 2 levels in DESeq2 ?
bioinformatics deseq rna-seq written 6 months ago by star40 • updated 6 months ago by abc30
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Remove batch effect for differential expression
R next-gen deseq rna-seq written 6 months ago by Ron560 • updated 6 months ago by WouterDeCoster17k
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Specifying model in DESeq - differentiation experiment
experimental design deseq2 deseq rna-seq written 7 months ago by Nathan0 • updated 7 months ago by Carlo Yague2.9k
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Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 9 months ago by camelbbs580 • updated 9 months ago by i.sudbery1.3k
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Model Matrix Design - Replicates Within and Between Batches
model replicate model matrix deseq written 9 months ago by adamlangenbucher0 • updated 9 months ago by russhh2.2k
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wrong heatmap with only two solid colors
forum ggplot2 deseq rna-seq heatmap written 10 months ago by shilpi.singh28110 • updated 10 months ago by WouterDeCoster17k
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Combining RNA seq and H3K27ac ChIP seq data
h3k27ac chip-seq deseq rna-seq manorm written 11 months ago by thomasterTW20 • updated 11 months ago by tangming20052.0k
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RNA Seq: Differential expression model formula
R deseq rna-seq edger written 11 months ago by rmf70 • updated 11 months ago by Devon Ryan66k
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analysing RNASeq with spike-In
normalization spike-in de genes deseq written 2.0 years ago by Assa Yeroslaviz1.1k • updated 11 months ago by Biostar ♦♦ 20
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DEseq matrix preparation
R deseq written 12 months ago by Learner 70
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DEseq2 analysis with 2 treatments, 8 timepoints and no replicates
R no replicates deseq rna-seq written 14 months ago by natsterbug0 • updated 14 months ago by russhh2.2k
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why two packages have not similar FDR ???
R mirnaseq deseq rna-seq edger written 14 months ago by unique37950 • updated 14 months ago by Devon Ryan66k
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