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Can I use pseudocounts for differential abundance of OTUs?
deseq written 5 days ago by dpc140 • updated 5 days ago by antonioggsousa830
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DEseq three-group comparison
deseq differential expression analysis rna-seq written 2.2 years ago by duvaller30 • updated 12 days ago by enquiry.ticacademy0
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Graphing timecourse data from DESeq2
deseq written 18 days ago by swbarnes28.1k
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Is it possible to identify different expressed genes by using TPM?
tpm deseq rna-seq written 19 days ago by taylor0 • updated 19 days ago by Shalu Jhanwar350
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Interaction Factors Removing All Variability
R deseq2 deseq rna-seq written 3 months ago by tyak95690 • updated 4 weeks ago by antonioggsousa830
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Genes vs transcripts in RNA-seq analysis
R deseq2 deseq rna-seq kallisto written 8 weeks ago by rstepien0950 • updated 8 weeks ago by caggtaagtat1.1k
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Combining RNA seq and H3K27ac ChIP seq data
h3k27ac chip-seq deseq rna-seq manorm written 4.1 years ago by thomasterTW20 • updated 3 months ago by Biostar ♦♦ 20
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RNA Seq: Differential expression model formula
R deseq rna-seq edger written 4.1 years ago by rmf950 • updated 4 months ago by Biostar ♦♦ 20
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analysing RNASeq with spike-In
normalization spike-in de genes deseq written 5.2 years ago by Assa Yeroslaviz1.3k • updated 7 months ago by Biostar ♦♦ 20
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5 follow
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DESeq model design
deseq rna-seq written 8 months ago by ika30
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Advice on DE analysis of mouse and human merged RNA-seq data
mouse deseq human rna-seq written 10 months ago by Adrian Pelin2.4k • updated 9 months ago by swbarnes28.1k
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7 follow
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cutoff for expressed genes in DESeq2
deseq rna-seq written 9 months ago by olechnwin30 • updated 9 months ago by swbarnes28.1k
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Ascend runDESeq() not finding factors
deseq ascend rna-seq written 11 months ago by cf55610 • updated 10 months ago by Biostar ♦♦ 20
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DESeq2 with different replicates
deseq rna-seq different replicate written 4.5 years ago by robertorun0 • updated 12 months ago by Biostar ♦♦ 20
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8 follow
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How to do FPKM differential analysis?
fpkm deseq rna-seq limma written 12 months ago by zhaoliang03020 • updated 12 months ago by kristoffer.vittingseerup3.4k
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DEseq results -- foldchange is 0/inf
deseq rna-seq written 12 months ago by Nan0 • updated 12 months ago by Chirag Parsania1.8k
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Sanity Check on RNA-Seq featureCounts / DESeq2
featurecounts deseq rna-seq written 15 months ago by gwebste70 • updated 15 months ago by Michael Dondrup47k
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