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<prev • 112 results • page 1 of 4 • next >
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DESeq2 unequal sample sizes
R deseq2 deseq written 2 days ago by glados • 20 • updated 10 hours ago by Kevin Blighe • 940
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1
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169
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1
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Differential expressed genes in DESeq
expression rna deseq rna-seq written 13 days ago by Lila M • 350 • updated 13 days ago by Devon Ryan ♦ 70k
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111
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Masking repeats in ATAC-seq data
repeats atac-seq deseq written 14 days ago by rbronste • 140
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1
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270
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1
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Computing TPM from normalized read count from DESEQ
expression mirna deseq genomics rna-seq written 4 weeks ago by jack • 680 • updated 4 weeks ago by geek_y ♦ 8.0k
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154
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RNA-seq gene expression normalization for independent samples
gene expression deseq rna-seq written 4 weeks ago by Amos • 0
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3
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214
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5 follow
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FPKM vs READ COUNT
normalization ngs deseq rna-seq written 3 months ago by avinashdhar123 • 0 • updated 3 months ago by Devon Ryan ♦ 70k
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231
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Why DESeq2 in parallel mode is slower than normal?!
parallel deseq rna-seq differential expression written 3 months ago by ilikebing2000 • 50 • updated 3 months ago by Michael Love • 1.4k
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Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
deseq vst written 5 months ago by jiab • 10
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How to annotate gene name on a differential read count plot by DESeq2?
R deseq rna-seq differential rnaseq written 6 months ago by tw30282 • 10
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293
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How to turn a FPKM table in a matrix that can be analyzed in R?
R fpkm deseq rna-seq matrix written 6 months ago by JimiOli • 0 • updated 6 months ago by Carlo Yague • 3.2k
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215
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Comparing two differential expression experiments
deseq differential expression written 7 months ago by user31888 • 20
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2
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297
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2
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Differences between Counts and FPKMS
next-gen differential-expression deseq rna-seq written 7 months ago by Ron • 600 • updated 7 months ago by Rob ♦ 2.0k
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515
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DESeq2 - how to build design for multiple paired samples before/after with 2 conditions? (non-crossover)
paired samples deseq2 deseq written 7 months ago by jahorst • 0
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Deseq covariates with interaction
deseq written 7 months ago by runnerbio88 • 70
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compare rows of colData and count Matrix
dexseq matrix deseq written 7 months ago by Assa Yeroslaviz • 1.1k
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Count Tables For Deseq [After Alignreads.Pl (Trinity)]
trinity deseq written 5.0 years ago by lzsph • 70 • updated 8 months ago by satomuraatsushi • 0
2
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1
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344
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1
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Normalisation of RNA-seq for different RNA biotypes
deseq rna-seq written 9 months ago by Nathaniel • 40 • updated 9 months ago by Devon Ryan ♦ 70k
3
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1
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317
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1
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Identifying DEG from time course data without condition
deseq edger rna-seq written 9 months ago by ChIP • 470 • updated 9 months ago by b.nota • 3.5k
2
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1
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478
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1
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Microarray Data Analysis using DEseq2
deseq microarray written 9 months ago by shashank.jatav • 10 • updated 9 months ago by WouterDeCoster ♦ 21k
3
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306
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1
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How should I define contrast with more than 2 levels in DESeq2 ?
bioinformatics deseq rna-seq written 10 months ago by star • 40 • updated 10 months ago by abc • 30
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Remove batch effect for differential expression
R next-gen deseq rna-seq written 10 months ago by Ron • 600 • updated 10 months ago by WouterDeCoster ♦ 21k
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Estimating Dispersions In Deseq: Which Is Best, All Conditions At Once, Or Each Condition Comparison Individually?
R bioconductor deseq rna-seq edger written 4.4 years ago by carmeyeii89 • 140 • updated 11 months ago by Biostar ♦♦ 20
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Specifying model in DESeq - differentiation experiment
experimental design deseq2 deseq rna-seq written 11 months ago by Nathan • 0 • updated 11 months ago by Carlo Yague • 3.2k
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error after DESeq function nbinomTest with only one replicate
no replicates nbinomtest deseq error written 13 months ago by anne.leinweber • 0 • updated 12 months ago by Chris Cole • 630
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545
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Number of reads in one gene affect the differential expression analysis?
rnaseq counts deseq deg rna-seq written 12 months ago by camelbbs • 610 • updated 12 months ago by i.sudbery • 1.5k
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360
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Model Matrix Design - Replicates Within and Between Batches
model replicate model matrix deseq written 13 months ago by adamlangenbucher • 0 • updated 13 months ago by russhh • 2.6k
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wrong heatmap with only two solid colors
forum ggplot2 deseq rna-seq heatmap written 14 months ago by shilpi.singh2811 • 0 • updated 14 months ago by WouterDeCoster ♦ 21k
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Combining RNA seq and H3K27ac ChIP seq data
h3k27ac chip-seq deseq rna-seq manorm written 15 months ago by thomasterTW • 20 • updated 14 months ago by tangming2005 • 2.1k
3
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461
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RNA Seq: Differential expression model formula
R deseq rna-seq edger written 15 months ago by rmf • 70 • updated 15 months ago by Devon Ryan ♦ 70k
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How to make a barplot with error bars of counts from one gene between 2 conditions from DESeq2 data
R ggplot rna-seq graph deseq written 15 months ago by mmrcksn • 50
<prev • 112 results • page 1 of 4 • next >
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