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<prev • 141 results • page 1 of 5 • next >
2
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93
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Compare samples from bacterial genome
metagenomics deseq written 4 days ago by David • 120
0
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0
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104
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0
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DGE Analysis between 3 conditions
deseq rna-seq edger written 8 days ago by prabin.dm • 30
3
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0
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188
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0
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featurecounts and DESEQ
bowtie2 featurecount deseq mirna written 22 days ago by anjuraas • 10
4
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2
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256
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5 follow
2
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Handling biological replicates across batches in DESeq2
R deseq2 deseq rna-seq written 7 weeks ago by Kristin Muench • 350
3
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2
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285
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2
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How to input data for DESeq2 from individual HTSeq count?
htseq deseq2 deseq rna-seq written 8 weeks ago by sudu87 • 0 • updated 8 weeks ago by poojasethiya • 70
7
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1
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1.2k
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1
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Why can't I replicate DESeq's Log2FC calculation?
rnaseq deseq2 deseq rna-seq written 2.8 years ago by Kristin Muench • 350 • updated 11 weeks ago by RamRS ♦ 19k
0
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0
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139
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0
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[DESeq] Collapsing replicate across sequencing batches?
deseq rna-seq written 12 weeks ago by Kristin Muench • 350
2
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1
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747
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5 follow
1
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DEseq three-group comparison
deseq differential expression analysis rna-seq written 6 months ago by duvaller • 10 • updated 3 months ago by RamRS ♦ 19k
2
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1
answer
253
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1
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Issue with DESeq: unable to find an inherited method for function (exprs) for signature DESeqTransform
R deseq rna-seq written 3 months ago by catglen012 • 0 • updated 3 months ago by WouterDeCoster ♦ 35k
4
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1
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290
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1
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how merge the gene expression value of two sample
deseq rna-seq gene-expression written 3 months ago by lkianmehr • 30 • updated 3 months ago by genomax ♦ 59k
8
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0
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436
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0
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Can I convert normalized counts from DESEQ2 into fpkm?
normalization fpkm deseq rna-seq written 4 months ago by nanoide • 10
1
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0
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283
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0
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DESEQ2 application on control vs treatment
deseq nanostring written 4 months ago by bioinfonerd • 10
4
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1
answer
364
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1
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Questions regarding VST/rlog correction to plot sample distances between RNA-seq samples
R deseq rna-seq written 4 months ago by salamandra • 180 • updated 4 months ago by Kevin Blighe ♦ 33k
5
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1
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180
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1
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Does importing HTseqcounts with txtimport corrects for gene length?
R deseq rna-seq written 4 months ago by salamandra • 180 • updated 4 months ago by Devon Ryan ♦ 86k
0
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1
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227
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1
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DE seq analysis using transcript expression data
deseq transcript written 5 months ago by shivangi.agarwal800 • 40 • updated 5 months ago by Dattatray Mongad • 240
3
votes
1
answer
465
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1
answer
Plot LFC with pheatmap of differentially expressed gene list from DESeq2.
heatmap pheatmap deseq2 deseq written 5 months ago by megannj • 10 • updated 5 months ago by Devon Ryan ♦ 86k
3
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1
answer
433
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1
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Differential Expression of a normalized RNAseq expression dataset
glioblastoma R tcga deseq rna-seq written 8 months ago by Arko • 10 • updated 8 months ago by Kevin Blighe ♦ 33k
0
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1
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400
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1
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Prefiltering gene lists and DESeq
R deseq rna-seq written 8 months ago by jjrin • 10 • updated 8 months ago by h.mon ♦ 21k
15
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2
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671
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2
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converting RSEM bam output into sam files for DEseq?
sam bam deseq rsem rna-seq written 9 months ago by Sepd • 0
2
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1
answer
586
views
1
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Why are DESeq2 size factors not null in case of sparse count matrix?
deseq2 deseq rna-seq written 10 months ago by holgerbrandl • 30 • updated 10 months ago by Kevin Blighe ♦ 33k
4
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0
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302
views
0
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Error in my DESeq script
R deseq rna-seq written 10 months ago by sandKings • 10
13
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4
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965
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5 follow
4
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Is it appropriate to assume genes of similar expression level also have similar variance?
differential-expression deseq written 11 months ago by -_- • 720 • updated 10 months ago by Santosh Anand • 4.3k
3
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2
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684
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2
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Subsetting DESeq2 results by padj quantity
R deseq2 deseq written 11 months ago by rbronste • 230 • updated 11 months ago by mbk0asis • 390
0
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0
answers
419
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0
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Multifactor design result extraction in voom limma
voom deseq2 limma deseq written 12 months ago by aarthir239 • 0
10
votes
1
answer
943
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5 follow
1
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Copy number variation using HTSeq/DESeq2
htseq copy number deseq written 12 months ago by ThePresident • 100 • updated 12 months ago by WouterDeCoster ♦ 35k
5
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1
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1.1k
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1
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sleuth vs deseq2
deseq2 deseq rna-seq written 12 months ago by Mozart • 70 • updated 12 months ago by Kevin Blighe ♦ 33k
0
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0
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716
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0
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Pairwise comparisons in Differential Expression
deseq rna-seq written 12 months ago by Ron • 830
5
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1
answer
681
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1
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Zero read count with deseq2
rnaseq deseq2 deseq differential expression written 13 months ago by scamiolo • 10 • updated 13 months ago by WouterDeCoster ♦ 35k
0
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1
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502
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1
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Asymmetric Differential Expression
R deseq2 deseq rna-seq edger written 13 months ago by gaber898 • 0 • updated 13 months ago by Kevin Blighe ♦ 33k
0
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1
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584
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1
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Accessing RPM from DESeq2
deseq rna-seq written 13 months ago by sjj2121 • 0 • updated 13 months ago by ATpoint ♦ 11k
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