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DESEQ2 design analysis
deseq2 rna-seq written 7 hours ago by Teresa • 20 • updated 7 hours ago by WouterDeCoster ♦ 36k
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158
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5 follow
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Compare SE and PE gene expression data.
deseq2 rna-seq written 6 days ago by sangram_keshari • 120 • updated 5 days ago by johnsonnathant • 70
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90
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Values in the data.frame are negative by RMA normalization, how deseq2 package work for that data?
rma deseq2 rna-seq written 7 days ago by dqz377977905 • 0 • updated 7 days ago by genomax ♦ 60k
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127
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What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
pca plot distance matrix deseq2 rna-seq written 7 days ago by swarajgaikwad15 • 0
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RNA-Seq time series analysis using a DESeq2 spline approach yields far too many significant genes
time series deseq2 rna-seq splines written 8 days ago by stu111538 • 50
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Tool: Graphical User Interface for creating an automated RNA-Sequencing Pipeline via Kallisto and DESeq2
deseq2 kallisto rna-seq tool written 13 days ago by Anthony.Knox • 50 • updated 11 days ago by Charles Warden ♦ 5.9k
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100
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DESeq2 multiple group comparison
deseq2 rna-seq written 13 days ago by dazhudou1122 • 40 • updated 13 days ago by Kevin Blighe ♦ 35k
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normalization with DEseq2
deseq2 rna-seq written 3.3 years ago by F • 3.2k • updated 13 days ago by RamRS ♦ 20k
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120
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1
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Gene correlation analysis after deseq2
deseq2 correlation clustering written 19 days ago by Biogeek • 340 • updated 18 days ago by dqz377977905 • 0
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189
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1
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Comparing gene expression between two samples
edgeseq deseq2 rna-seq written 19 days ago by F • 3.2k
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101
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1
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Finding deferentially active regions with DESeq2
R deseq2 chip-seq written 4 weeks ago by m.wekking • 10 • updated 4 weeks ago by shawn.w.foley • 140
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Identifiyng mutual trends between treatments
differential-expression deseq2 rna-seq statistics written 4 weeks ago by uriamo • 0 • updated 4 weeks ago by kristoffer.vittingseerup • 1.3k
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135
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Comparing gene expression of specific genes between samples in DESeq2 / R
deseq2 tpm rna-seq written 4 weeks ago by masicioglu • 0
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175
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How to deal with large inter-sample variation when using GTEx RNA-seq data?
variation deseq2 rna-seq gtex limma written 4 weeks ago by Akos • 20
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156
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Different options tryed with DiffBind and did not know what final result believe
R diffbind deseq2 chip-seq edger written 5 weeks ago by iraia.munoa • 50
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2
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238
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5 follow
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FPKM and DESEq - RNAseq
fpkm deseq2 rna-seq written 5 weeks ago by carolgalah • 0 • updated 5 weeks ago by dz2353 • 50
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132
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Multiple DESeq2 comparisons
R deseq2 rna-seq written 5 weeks ago by Sethzard • 10
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174
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How to export rld (rlog) or vsd values from DESeq2?
rlog vsd deseq2 rna-seq written 5 weeks ago by LuisNagano • 10 • updated 5 weeks ago by WouterDeCoster ♦ 36k
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6 follow
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Strange MA-plot using DESeq2
R deseq2 rna-seq written 14 months ago by Cecelia • 20 • updated 6 weeks ago by Renesh • 1.5k
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1
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225
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1
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DESeq2 design formula: how to use the opposite interaction term?
deseq2 rna-seq written 6 weeks ago by salamandra • 180 • updated 6 weeks ago by Kevin Blighe ♦ 35k
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3
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237
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5 follow
3
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Normalization for small non-coding RNA (piRNAs)
normalization deseq2 limma edger written 8 weeks ago by Konstantinos Yeles • 40 • updated 6 weeks ago by A. Domingues • 1.8k
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160
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miRNA mRNA interaction studies
mrna interaction deseq2 mirna written 7 weeks ago by anjuraas • 10
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1
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166
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1
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Featurecounts normalize by gene length
featurecount deseq2 tpm written 7 weeks ago by David • 120
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featureCounts to DESeq2: Unable to form object and divide it unequally
R featurecounts subread deseq2 rna-seq written 7 weeks ago by swarajgaikwad15 • 0
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186
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Tximport > DESeq2 (sample names)
tximport deseq2 rna-seq written 7 weeks ago by b.d237 • 40
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135
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Normalized counts data from DESeq2 with gene ids
normalized counts R deseq2 gene id rna-seq written 7 weeks ago by LuisNagano • 10
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193
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parameters to DESeq2 for RNA-seq data
deseq2 rna-seq written 8 weeks ago by avitalwasser • 0 • updated 8 weeks ago by Kevin Blighe ♦ 35k
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1
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149
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1
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'gene_name' is missing in StringTie output file 't_data.ctab'
stringtie deseq2 new tuxedo protocol rna-seq written 8 weeks ago by swarajgaikwad15 • 0 • updated 8 weeks ago by Viswanathan • 0
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176
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1
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Error in running DESeqDataSetFromTximport
tximport R stringtie deseq2 rna-seq written 9 weeks ago by ankur • 0 • updated 9 weeks ago by Devon Ryan ♦ 87k
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1
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183
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1
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Unable to create file for tximport
tximport stringtie deseq2 rna-seq written 9 weeks ago by ankur • 0 • updated 9 weeks ago by kristoffer.vittingseerup • 1.3k
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