Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: deseq2 • reset
or   Classic search
<prev • 578 results • page 1 of 20 • next >
0
votes
0
answers
13
views
0
answers
Highly biased experiment showing funny histogram of p values for all tests. Suggestions?
deseq2 rna-seq filtering written 1 hour ago by Mozart • 140
0
votes
0
answers
88
views
0
answers
Can DESeq2 accept Ion AmpliSeq Transcriptome sequencing read counts matrix on GEO as input?
geo deseq2 ion rna-seq written 1 day ago by MatthewP • 200
1
vote
1
answer
97
views
1
answer
What is the gold standard for the one-to-many relationships in BioMart retrieved annotations and adding them to a DESeq2 results table
one-to-many relationships biomart deseq2 written 5 days ago by 2405592M • 30 • updated 5 days ago by Mike Smith • 1.3k
1
vote
0
answers
63
views
0
answers
Error in tximport: all(file.exists(files)) is not TRUE
tximport deseq2 written 9 days ago by F. Golestan • 20 • updated 9 days ago by h.mon ♦ 26k
4
votes
2
answers
117
views
5 follow
2
answers
transformed read counts in deseq2
data deseq2 read counts written 10 days ago by anna • 0 • updated 10 days ago by Prakash • 1.4k
2
votes
1
answer
1.1k
views
1
answer
DESeq2 results interpretation
interpretation deseq2 results written 11 months ago by anna • 0
1
vote
1
answer
2.0k
views
1
answer
DeSeq2 data transformation for visualization
deseq2 data transformation written 3.9 years ago by sunil.mangalam • 10 • updated 10 days ago by ATpoint ♦ 21k
3
votes
1
answer
80
views
1
answer
How to include geneIDs in colData and countData format in DESeq2?
deseq2 rna-seq written 12 days ago by jpcchoy • 0 • updated 12 days ago by swbarnes2 ♦ 6.1k
3
votes
1
answer
119
views
1
answer
analysis of multiple batches and multiple treatment conditions in scRNA-seq
scrna-seq deseq2 combat limma edger written 16 days ago by Bogdan • 850 • updated 15 days ago by sofiagreen72211 • 30
0
votes
1
answer
70
views
1
answer
A error when using zinbwave:'package:stats' may not be available when loadingError in serialize(data, node$con) : error writing to connection
zinbwave scrna-seq deseq2 written 18 days ago by hsu • 10 • updated 18 days ago by Jean-Karim Heriche ♦ 20k
1
vote
0
answers
118
views
0
answers
error in deseq2
deseq2 mirna written 18 days ago by anjuraas • 10
0
votes
0
answers
119
views
0
answers
Issues with interpretation of DESeq2 time series analysis results
deseq2 rna-seq lrt written 18 days ago by maxnest • 10 • updated 18 days ago by ATpoint ♦ 21k
0
votes
0
answers
122
views
0
answers
Differential abundance analysis of two samples with only a single replicate
deseq2 written 9 weeks ago by Ming • 30 • updated 19 days ago by Biostar ♦♦ 20
1
vote
0
answers
98
views
0
answers
DEG tool for just 2 pair end data
deseq2 limma rna-seq edger written 20 days ago by sabaghianamir70 • 0 • updated 20 days ago by RamRS ♦ 23k
5
votes
2
answers
138
views
5 follow
2
answers
How to change my colnames(count.table) as exactly similar to my rownames(meta)?
tximport R deseq2 kallisto rna-seq written 23 days ago by F. Golestan • 20 • updated 21 days ago by ATpoint ♦ 21k
0
votes
0
answers
81
views
0
answers
Interaction terms and main effects in DESeq2
deseq2 rna-seq written 21 days ago by Samuel • 0
2
votes
0
answers
1.1k
views
0
answers
Why DESeq2 filter and remove genes with high count?
gene R deseq2 edger written 2.9 years ago by star • 190 • updated 24 days ago by Biostar ♦♦ 20
4
votes
1
answer
182
views
1
answer
How to quantify gene expression when stringtie considers two adjacent genes as single gene?
htseq stringtie deseq2 de rna-seq written 4 weeks ago by kousi31 • 0
0
votes
1
answer
106
views
1
answer
DESeq2 nested effect with 5 variables
R deseq2 rna-seq written 26 days ago by sandeep.amberkar18 • 30 • updated 26 days ago by leaodel • 80
2
votes
0
answers
141
views
0
answers
including batch in design~
deseq2 rna-seq written 27 days ago by Morris_Chair • 120
0
votes
1
answer
84
views
1
answer
collapseReplicates changes the order of the original dataframe in DESeq2
collapsereplicates deseq2 written 27 days ago by grant.hovhannisyan • 1.7k
1
vote
1
answer
137
views
1
answer
comparing kallisto rsem , makind sd plot and corelation table /graph
rsem deseq2 kallisto edger rnaseqcomp written 4 weeks ago by yusuf • 10 • updated 4 weeks ago by WouterDeCoster ♦ 40k
18
votes
2
answers
169
views
7 follow
2
answers
Doing differential gene expression without knowing sample classes
deseq2 rna-seq edger written 4 weeks ago by F • 3.4k
1
vote
1
answer
199
views
1
answer
Setting Up Model in DeSeq2
deseq2 rna-seq differential expression htseqcount written 5 weeks ago by lkw222 • 30 • updated 5 weeks ago by genomax ♦ 70k
2
votes
1
answer
137
views
1
answer
How to proceed after removing batch effect with limma?
batch-effect deseq2 limma rna-seq written 5 weeks ago by slapiiv • 40 • updated 5 weeks ago by Pietro • 90
4
votes
0
answers
251
views
0
answers
concern about statistical model after more than 78% of genes are differentially expressed according to DESeq2?
rnaseq deseq2 written 5 weeks ago by boaty • 70
3
votes
1
answer
133
views
5 follow
1
answer
Comparing different transcripts expression level of a list of genes from one condition
R deseq2 salmon kallisto rna-seq written 5 weeks ago by mr.monahton • 20 • updated 5 weeks ago by andrew.j.skelton73 ♦ 5.8k
1
vote
1
answer
196
views
1
answer
True meaning of global transcriptome analysis
R sequence deseq2 rna-seq written 6 weeks ago by babasaraki • 0
3
votes
3
answers
197
views
5 follow
3
answers
How to normalize my results after DESeq2
normalization degs deseq2 rna-seq written 6 weeks ago by nvijay1991 • 0
6
votes
2
answers
136
views
2
answers
Does is make sense if I select a subset from the count matrix to do DE analysis?
deseq2 limma rna-seq written 6 weeks ago by vw • 20 • updated 6 weeks ago by Bastien Hervé ♦ 4.4k
<prev • 578 results • page 1 of 20 • next >
Recent Votes
Recent Locations • All »
  • Belgium, Brussels, just now
  • Sheffield, UK, just now
  • Hannover Medical School, just now
  • France, just now
  • India, just now
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1557 users visited in the last hour