Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: deseq2 • reset
or   Classic search
<prev • 405 results • page 1 of 14 • next >
5
votes
0
answers
108
views
0
answers
25 DE genes with 8 samples and 4 DE genes with 16 samples
deseq2 rna-seq written 5 days ago by Pin.Bioinf • 150 • updated 7 hours ago by Biostar ♦♦ 20
7
votes
1
answer
1.1k
views
1
answer
Why can't I replicate DESeq's Log2FC calculation?
rnaseq deseq2 deseq rna-seq written 2.6 years ago by Kristin Muench • 310 • updated 1 day ago by RamRS ♦ 17k
6
votes
1
answer
77
views
1
answer
DESEQ2 size factors change when number of samples change in the design
deseq2 written 2 days ago by ZheFrench • 140
0
votes
1
answer
70
views
1
answer
Heatmap with normalised count from DESEQ2
deseq2 heatmap written 2 days ago by ZheFrench • 140 • updated 2 days ago by Kristin Muench • 310
3
votes
1
answer
79
views
1
answer
How different is rlog transformation from vst transformation in DESeq2
count normalization deseq2 written 3 days ago by piyushjo • 40 • updated 2 days ago by Charles Warden ♦ 5.2k
0
votes
2
answers
94
views
5 follow
2
answers
Proper design for DESeq2 and other RNAseq general questions
stringtie deseq2 rna-seq hisat2 written 3 days ago by Stef • 0 • updated 3 days ago by swbarnes2 ♦ 4.0k
1
vote
0
answers
85
views
0
answers
Differential gene analysis from a javascript based web app
R deseq2 javascript written 4 days ago by nikitavlassenko • 10
15
votes
3
answers
176
views
6 follow
3
answers
Is it possible to analyze differentially expressed genes without sample replicates using DESeq2?
deseq2 rna-seq written 6 days ago by Sarath Kumar • 0 • updated 5 days ago by Santosh Anand • 3.9k
1
vote
1
answer
86
views
1
answer
Single Kallisto abundance
deseq2 kallisto rna-seq written 7 days ago by Duckula • 0
5
votes
1
answer
150
views
1
answer
Weird R behaviour with NAs in DESeq2 results
R na deseq2 rna-seq written 9 days ago by Carlo Yague • 4.2k • updated 8 days ago by RamRS ♦ 17k
0
votes
1
answer
136
views
1
answer
Issue with DESeq: when using DESeqDataSet object what to put under argument design when there are 3 variables
R deseq2 rna-seq written 10 days ago by catglen012 • 0
1
vote
1
answer
120
views
1
answer
How to change colour of points in volcano plot by common genes?
deseq2 log2fc volcano plot rna-seq written 9 days ago by cilgaiscan • 30 • updated 9 days ago by Kevin Blighe ♦ 28k
3
votes
1
answer
115
views
1
answer
Issue with DESeq2: Unable to create colData because "Error in data[[rowvar]]"
R deseq2 rna-seq written 11 days ago by catglen012 • 0 • updated 11 days ago by Kevin Blighe ♦ 28k
1
vote
2
answers
1.8k
views
2
answers
DESeq2 for differential expression analysis of RNA-seq datawith few samples per condition?
replicates samples deseq2 rna-seq written 2.9 years ago by amyfm • 10 • updated 11 days ago by Biostar ♦♦ 20
2
votes
1
answer
106
views
1
answer
transcription expression matrix for DESEQ2
R deseq2 rna-seq deg written 12 days ago by Duckula • 0 • updated 12 days ago by andrew.j.skelton73 ♦ 5.3k
3
votes
0
answers
110
views
0
answers
FIMO output that preserves padj values
fimo meme deseq2 chip-seq motifs written 16 days ago by rbronste • 170
5
votes
1
answer
88
views
1
answer
DESeq2 comparison of normalized counts from different experiments
deseq2 rna-seq written 18 days ago by Matthias • 10
2
votes
1
answer
117
views
1
answer
Comparison and cross-sample normalization for RNAseq from different experiments
kalliso normalization sleuth deseq2 rna-seq written 18 days ago by urjaswita • 70 • updated 18 days ago by Devon Ryan ♦ 84k
2
votes
1
answer
122
views
1
answer
DESeq2 results interpretation
interpretation deseq2 results written 19 days ago by anna • 0 • updated 19 days ago by Kevin Blighe ♦ 28k
6
votes
1
answer
286
views
1
answer
Design in DESeq: Can you combine explicit and implicit batch effect correction in (SVA+Metadata Variables)?
R sva deseq2 batch effects written 5 weeks ago by Kristin Muench • 310 • updated 21 days ago by Teresa • 0
4
votes
0
answers
232
views
0
answers
Help with multi-factor Deseq analysis
deseq2 rna-seq written 23 days ago by MAPK • 1.3k
0
votes
0
answers
115
views
0
answers
Preprocessing for DESeq2 - create metadata table
htseq-count deseq2 rna-seq written 27 days ago by alexadeanfitz • 10 • updated 26 days ago by h.mon ♦ 19k
5
votes
0
answers
143
views
5 follow
0
answers
News: sharing BiocWorkshops 2018
deseq2 rna-seq news limma glimma edger written 28 days ago by Bogdan • 640 • updated 28 days ago by Pierre Lindenbaum ♦ 112k
0
votes
0
answers
163
views
0
answers
DESeq2 log2 fold change
deseq2 nanostring written 4 weeks ago by bioinfonerd • 10
3
votes
1
answer
207
views
1
answer
Making a heatmap: sample vs. fold change
R deseq2 rna-seq heatmap written 5 weeks ago by Kristin Muench • 310 • updated 5 weeks ago by dr_bantz • 80
4
votes
1
answer
188
views
1
answer
Deseq2: What is the most correct experimental design for this experiment?
experimental design deseq2 rna-seq written 5 weeks ago by salamandra • 170 • updated 5 weeks ago by Devon Ryan ♦ 84k
3
votes
1
answer
159
views
1
answer
Help understanding the meaning of variables in DESeq design matrix
R deseq2 rna-seq written 5 weeks ago by Kristin Muench • 310 • updated 5 weeks ago by Devon Ryan ♦ 84k
4
votes
1
answer
181
views
1
answer
Multi-factor analysis with DESeq: which approach is correct?
R deseq2 rna-seq written 6 weeks ago by Kristin Muench • 310 • updated 6 weeks ago by Devon Ryan ♦ 84k
0
votes
0
answers
166
views
0
answers
RNA-seq data analysis to detect dosage effect or proportional increase/decrease in expression across a series
dosage effect deseq2 rna-seq written 11 weeks ago by nancy • 60 • updated 6 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
135
views
1
answer
Design for paired Deseq2 analysis
deseq2 rna-seq written 6 weeks ago by Pin.Bioinf • 150 • updated 6 weeks ago by wyzinasu • 30
<prev • 405 results • page 1 of 14 • next >
Recent Votes
Recent Locations • All »
  • Belgium, just now
  • United Kingdom, 1 minute ago
  • United Kingdom, 5 minutes ago
  • Brazil, 5 minutes ago
  • Belgium, 5 minutes ago
  • India, 7 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 771 users visited in the last hour