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<prev • 808 results • page 1 of 27 • next >
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Protein TMT data; Dispersion plot looks strange
dispersionplot deseq2 tmt data written 1 day ago by BS • 0
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76
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Clustered GO-term heatmap
cluster go term deseq2 rna-seq heatmap written 4 days ago by ccha97 • 20
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2
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122
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heatmap in R
R deseq2 rna-seq written 6 days ago by rhasanvandj • 0 • updated 5 days ago by luiz.rocha • 0
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67
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6 follow
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How to make heatmap of log fold change for multiple conditions from RNA-seq
deseq2 rna-seq heatmap written 5 days ago by mar77 • 20 • updated 5 days ago by Kevin Blighe ♦ 66k
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96
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DESeq2 analysis with high number of samples
next-gen deseq2 rna-seq written 7 days ago by Manoj • 80 • updated 7 days ago by RamRS ♦ 30k
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3
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140
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6 follow
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Difference between padj and FDR
deseq2 rna-seq written 7 days ago by ML • 0 • updated 7 days ago by i.sudbery ♦ 9.3k
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116
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How to do DESeq2 for Kallisto
deseq2 kallisto rna-seq written 8 days ago by Manoj • 80
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DESeq2 LRT: Does the order of the factor levels matter?
deseq2 rna-seq written 8 days ago by basch • 0
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673
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7 follow
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Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
stringtie deseq2 rna-seq written 18 months ago by Fawzi Yassine • 10 • updated 9 days ago by kristoffer.vittingseerup • 3.4k
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89
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Differential Abundance Analysis wih DESeq2 and metabolites as continuous predictor variables
differential abundance microbiome deseq2 written 13 days ago by greenm11 • 0
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119
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5 follow
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DESeq2 with one sample eliminated
deseq2 rna-seq written 13 days ago by whytrykillme • 0 • updated 13 days ago by umekage • 0
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112
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5 follow
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DESeq2- How to design data for multiple comparisons?
R deseq2 rna-seq differentialgeneexpression written 13 days ago by Aly S • 0 • updated 13 days ago by rpolicastro • 1.7k
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93
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DESeq2 cannot compute log geometric means
R deseq2 rna-seq written 13 days ago by Bioinfonext • 250 • updated 13 days ago by andres.firrincieli • 880
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88
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TCGA- which files to download for analyzing differentially expressed miRNAs
sequencing tcga deseq2 rna-seq mirna written 14 days ago by Aly S • 0
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pheatmap in R - Error: logical subscript contains NAs
R deseq2 rna-seq pheatmap written 17 days ago by rhasanvandj • 0 • updated 16 days ago by ATpoint ♦ 39k
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139
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Surrogate variables in eQTL studies
sva deseq2 covariates eqtl gtex written 5 weeks ago by rodd • 130
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171
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1
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Is there any available code for DeSeq2 method in R?
R deseq2 written 25 days ago by Chaimaa • 230 • updated 25 days ago by rpolicastro • 1.7k
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1
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147
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1
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gpar element must not be length zero - pheatmap error
pheatmap deseq2 rna-seq heatmap written 26 days ago by ccha97 • 20
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156
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1
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DESeq2: How do one label specific points (gene) on the DESEq2 plot?
gene R deseq2 r-studio written 28 days ago by jaqx008 • 70
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109
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How to handle multivariable experiment with potential confounding and no biological replicates in DESeq2
R deseq2 rna-seq written 4 weeks ago by DeadlyFall • 0
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102
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transcript differential expression analysis
gene deseq2 rna-seq statistics written 4 weeks ago by robinycfang • 0
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116
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How to choose the right model?
deseq2 glm rna-seq written 4 weeks ago by Sam • 30 • updated 4 weeks ago by caggtaagtat • 1.3k
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110
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Extract Deviance Residuals from DESeq2
deseq2 glm rna-seq written 4 weeks ago by chasem • 0
2
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131
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1
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DESeq2 LFC thresholding strategy and its affect on p-value adjustment
p-value log fold change deseq2 rna-seq written 4 weeks ago by ivn25 • 0 • updated 4 weeks ago by andres.firrincieli • 880
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128
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Issues with DESeq2 LRT for time-course experiment
R deseq2 rna-seq lrt written 4 weeks ago by luke.briody • 0
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How to fix extreme outliers not picked up by DESeq2?
tximport outlier deseq2 cook's distance rna-seq written 4 weeks ago by fisher.w.daniel • 0 • updated 4 weeks ago by antonioggsousa • 1.4k
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158
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Center and scale RIN values for DESeq2?
deseq2 rin written 4 weeks ago by randalljellis • 80
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188
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DESeq2: Transform count data by VST and Covariates
normalization deseq2 covariates rna-seq written 5 weeks ago by fisher.w.daniel • 0
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218
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Top Variable DEGs into a heatmap
R degs deseq2 rna-seq heatmap written 5 weeks ago by ccha97 • 20 • updated 5 weeks ago by Sebastian Hesse • 180
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multi-factor Deseq LRT test analysis
deseq2 design rna-seq lrt written 5 weeks ago by aiswaryabioinfo • 20 • updated 5 weeks ago by tiago211287 • 1.2k
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