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<prev • 232 results • page 1 of 8 • next >
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Different PCA plots using rlog and vsd on the same data set
deseq2 pca rna-seq written 1 day ago by lirongrossmann • 20 • updated 1 day ago by geek_y ♦ 8.0k
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Time Course Design in DESeq2
deseq2 timecourse mirna-seq written 4 days ago by gkuffel22 • 30
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101
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Conditional modification of counts in the DESeq Data Set
deseq2 written 4 days ago by lech.kaczmarczyk • 10 • updated 4 days ago by James Ashmore • 2.0k
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DESeq2 unequal sample sizes
R deseq2 deseq written 8 days ago by glados • 20 • updated 6 days ago by Kevin Blighe • 1.3k
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Selecting Deferentially Expressed Genes in RNASeq data analysis - DESEq2 and Cuffdiff
deseq2 rna-seq written 11 days ago by Sreeraj Thamban • 30 • updated 11 days ago by Kevin Blighe • 1.3k
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110
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deseq2 LRT vs Wald test results for DE expression among 4 conditions
deseq2 rna-seq written 12 days ago by chrysanthi.taxiarchi12 • 0 • updated 12 days ago by Devon Ryan ♦ 70k
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144
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Mixed biological and technical replicates in RNAseq differential expression experiment.
replicates experimental design deseq2 rna-seq written 14 days ago by jcrickets • 0
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Efficient way to run a DESeq2 analysis with many design formulae
bioinformatics deseq2 rna-seq microbiome written 18 days ago by cdiener • 0 • updated 17 days ago by Michael Love • 1.4k
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What are the major differences in the computation of DE genes between deseq2 and limma?
R deseq2 limma differential expression rna-seq written 5 weeks ago by sbrown669 • 10 • updated 18 days ago by Kevin Blighe • 1.3k
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DESeq2 Heatmap issue
deseq2 rna-seq heatmap written 22 days ago by dazhudou1122 • 40
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Validation of RNASeq Data - How to validate RNASeq DEGs using qPCR
deseq2 rna-seq written 26 days ago by Sreeraj Thamban • 30 • updated 26 days ago by lessismore • 170
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normalization of POL2 ChIP-seq for the calculation of POL2 Pausing Ratios
deseq2 chip-seq edger written 27 days ago by Bogdan • 260
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5 follow
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vennDigram for multiple RNA-seq data
R deseq2 rna-seq written 4 weeks ago by ta_awwad • 100 • updated 4 weeks ago by andrew.j.skelton73 • 3.7k
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Deseq2 does not recognize htseq count outputs
deseq2 rna-seq inputs are not recognized written 4 weeks ago by nazaninhoseinkhan • 190
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GSEA following DESeq2
R deseq2 rna-seq gsea written 7 weeks ago by sup230 • 20 • updated 7 weeks ago by geek_y ♦ 8.0k
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267
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DESEQ2 for ASE
allele-specific expression deseq2 rna-seq written 7 weeks ago by grant.hovhannisyan • 260
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Pipeline for analysing RNA-seq exon level data with lot of samples?
dexseq deseq2 diffsplice diffsplicedge rna-seq written 8 weeks ago by sarin.heikki.v • 10
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5 follow
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Enrichment Analysis from DESeq2 data
deseq2 rna-seq written 8 weeks ago by gkuffel22 • 30 • updated 8 weeks ago by EagleEye • 4.7k
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295
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RNA-Seq time course DESeq2 analysis
deseq2 time-course rna-seq written 9 weeks ago by remi.willamme • 0 • updated 9 weeks ago by Constantine • 150
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how to know in which category certain OTUs are abundant?
R ggplot2 deseq2 written 10 weeks ago by rahulbiosciences • 0 • updated 10 weeks ago by Istvan Albert ♦♦ 73k
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What the heck is going on with this DESeq2 MA Plot?
R deseq2 ma plot rna-seq written 11 weeks ago by Kristin Muench • 170
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rnaseq data vs. phenotype
tophat2 deseq2 rna-seq written 11 weeks ago by firatuyulur • 170
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5 follow
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Using StringTie with DESeq2(StringTie geneID and corresponding Ensembl geneID)
stringtie deseq2 written 11 weeks ago by Megan • 30 • updated 11 weeks ago by stephensmithgalway • 20
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What is an optimal normalization approach for comparing GTEx RNASeq normal vs TCGA tumor samples?
normalization sva deseq2 rna-seq written 24 months ago by Samir • 120 • updated 11 weeks ago by mforde84 • 900
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Retrieving Annotation data from runTest() created object
deseq2 topgo gene ontology rna-seq written 12 weeks ago by Sreeraj Thamban • 30
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Advice needed on RNAseq technical and biological replicates analysis using DEseq2
next-gen deseq2 rna-seq written 12 weeks ago by macmath • 110 • updated 12 weeks ago by Samuel Brady • 230
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DESeq stuck at final dispersion estimates (SubmitJobs)
deseq2 rna-seq biocparallel written 12 weeks ago by mmfansler • 20
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how investigate genes after meta-analysis in each experiment
deseq2 meta-analysis metaseq deg written 3 months ago by Edalat • 10 • updated 12 weeks ago by Biostar ♦♦ 20
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282
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How to perform DESeq2 based on paired sample test?
deseq2 rna-seq written 3 months ago by Xiaokang ZH • 20 • updated 3 months ago by Devon Ryan ♦ 70k
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How to analyze differentially expressed lncRNA from total RNA
deseq2 rna-seq lncrna written 3 months ago by ta_awwad • 100 • updated 3 months ago by EagleEye • 4.7k
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