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<prev • 657 results • page 1 of 22 • next >
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R AnnotationDbi returning NA for pseudogenes during gene id annotation
annotationdbi R deseq2 pseudogene ensembl written 4 months ago by sg197 • 10 • updated 2 days ago by UVDorian • 0
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50
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Meta-analyzing DESeq2 output
rnaseq deseq2 written 4 days ago by gradstudentNew • 30
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55
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0
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DEGs analysis with StringTie results?
stringtie degs deseq2 written 5 days ago by mathavanbioinfo • 50
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73
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DEGS analysis with DESeq2?
deseq2 degs written 5 days ago by mathavanbioinfo • 50
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1
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57
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1
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Rename samples for plotting using plotPCA
deseq2 rna-seq written 7 days ago by c_u • 170
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1
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72
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1
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RNA-seq differential analysis with N batches and a technical replicate in each batch
differential analysis deseq2 rna-seq edger written 12 days ago by jonathanli6022 • 0 • updated 8 days ago by Gordon Smyth • 1.4k
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84
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1
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limma::removeBatchEffect and using DESeq2 for RNA-seq differential expression
deseq2 limma::removebatcheffect written 8 days ago by 2405592M • 60 • updated 8 days ago by leaodel • 110
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67
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Issue with Salmon and Deseq2 with paired-end and single-end reads libraries
rnaseq tximport deseq2 salmon written 9 days ago by Andrés Ribone • 0
6
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2
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153
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6 follow
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GSEA PreRanked lists from DESeq2 results table
fgsea deseq2 gsea preranked written 11 days ago by Assa Yeroslaviz • 1.3k • updated 10 days ago by jomo018 • 540
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1
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82
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1
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Complex DESeq2 Model with different gene dosages
rnaseq genes deseq2 statistics written 11 days ago by gradstudentNew • 30
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1
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76
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1
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DESEQ2 : plotPCA
deseq2 pca rna-seq written 13 days ago by ZheFrench • 270
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1.4k
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1
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Package interactions in R
R deseq2 written 3.5 years ago by mikael.lenz.strube • 60 • updated 14 days ago by franniehwu • 0
3
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1
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73
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1
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Batch correction for small RNA-Seq data
genome R sequence rna deseq2 written 15 days ago by yronimuz • 0
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75
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Is DESeq2 analysis valid for Metatranscriptomics?
metatranscriptomics deseq2 rna-seq written 21 days ago by Tom • 520
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71
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1
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Deseq2 design. Control, siRNA knockdown and scramble siRNA
R deseq2 rna-seq written 22 days ago by marie.lorans • 0 • updated 21 days ago by i.sudbery ♦ 6.9k
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78
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1
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DESEQ2 Error in .local(object, ...) : all genes have equal values
software error R deseq2 rna-seq written 28 days ago by ovariohisterectomia • 10
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101
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how to create -gct and .cls files from RNASeq counts?
.gct deseq2 gsea .cls rna-seq written 28 days ago by annamariabugaj • 0
1
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1
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92
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1
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missing coeeficients in resultsNames(dds)
deseq2 design written 4 weeks ago by Assa Yeroslaviz • 1.3k
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1
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118
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1
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DESeq2 4 group comparison
deseq2 rna-seq deg heatmap written 4 weeks ago by arabi • 0 • updated 4 weeks ago by ATpoint ♦ 29k
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1
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121
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1
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Deseq2 multiple variables!
R deseq2 written 4 weeks ago by andreiareis1987 • 30 • updated 4 weeks ago by swbarnes2 ♦ 7.4k
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1
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155
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1
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DEseq2 tool on Galaxy software problems regarding normalization of featurecounts.
deseq2 tool rna-seq written 4 weeks ago by valid.universitadipavia.it • 0 • updated 4 weeks ago by zx8754 ♦ 9.0k
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3
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5 follow
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Why do I get different results for PC1 from plotPCA(DESeq2) and prcomp?
deseq2 pca plotpca prcomp written 5 weeks ago by maria2019 • 90
2
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1
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187
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1
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Can't install DESeq2 via Docker container because of dependency issues
gene R deseq2 docker rna-seq written 5 weeks ago by cdastmalchi • 0 • updated 5 weeks ago by sviatoslav.kendall • 760
0
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1
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96
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1
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Error in DESeqDataSetFromMatrix
R deseq2 rna-seq written 6 weeks ago by hazemfma • 0 • updated 6 weeks ago by ATpoint ♦ 29k
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0
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121
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0
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Comparing multiple groups within multiple Cell Lines in DESEQ2
R deseq2 chip-seq rna-seq written 9 weeks ago by Triple Nipple • 0
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1
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5 follow
1
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Normalization methods for metagenomics WGS data (not 16S data)
normalization deseq2 edger written 2.8 years ago by David • 160 • updated 9 weeks ago by shengwei • 30
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121
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0
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Annotation of DESeq2 normalized count matrix?
R bioconductor deseq2 de rna-seq written 9 weeks ago by adam.sorbie • 0
0
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1
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212
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1
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Deseq2 error,RNA-seq, usegalaxy
deseq2 rna-seq written 11 weeks ago by anjuraas • 10 • updated 10 weeks ago by skjobs0123 • 60
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163
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0
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DESeq2 Error on Galaxy
galaxy deseq2 rna-seq written 11 weeks ago by sp21 • 0
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1
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739
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1
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rRNA removal needed for salmon / DESeq2 analysis
rrna deseq2 salmon contamination written 15 months ago by mark.dunning • 210 • updated 11 weeks ago by ATpoint ♦ 29k
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