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<prev • 499 results • page 1 of 17 • next >
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How can I analyze this data in Deseq?
rnaseq R deseq2 deseq written 31 minutes ago by MAPK • 1.4k
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removing confounding batch effect with RUVseq
ruvseq deseq2 rna-seq batch effect written 2 days ago by grant.hovhannisyan • 1.4k
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Double checking R model
deseq2 rna-seq written 3 days ago by andrea.etter • 0
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Interpreting DESeq2 Results (head)
result intepretation deseq2 written 6 days ago by jaqx008 • 40 • updated 6 days ago by collmerr • 20
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Differential expression analysis for time course data
deseq2 rna-seq written 8 days ago by bharata1803 • 420
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"Manual" enrichment analysis of gene set for genes associated with cell types
deseq2 rna-seq gsea gene enrichment analysis written 10 days ago by rebeliscu • 0
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DESeq2 - Between sample normalization of train/test subsets
normalization deseq2 rna-seq survival tcga written 10 days ago by ml_researcher • 0 • updated 10 days ago by Asaf ♦ 5.3k
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eclip-seq: Using edgeR/DESeq2 for normalizing peaks of IP/Input of transcript level
clip-seq eclip-seq deseq2 edger written 25 days ago by gnilihzeux • 0
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How to convert log2FC (Fold Change) obtained by differential expression analysis by DESeq2 to FC
deseq2 log2fc differential expression written 12 days ago by sole.r.v • 0 • updated 11 days ago by ZheFrench • 200
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DESeq2 and integers values
deseq2 rna-seq written 14 days ago by Morris_Chair • 50
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miRNA differential expression
de deseq2 rna-seq mirna written 16 days ago by anshulmbi • 0
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Batch correction: Before and After Visualisation
combat deseq2 svaseq rna-seq written 17 days ago by prabin.dm • 30
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121
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DESeq2 Trouble shoot
scatterplot dds deseq2 written 28 days ago by jaqx008 • 40 • updated 28 days ago by Devon Ryan ♦ 88k
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Interpreting DESeq2 Results
scatterplot deseq2 log2foldchange written 4 weeks ago by jaqx008 • 40 • updated 4 weeks ago by Bastien Hervé ♦ 3.7k
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Interpreting DEseq2 results
deseq2 written 5 weeks ago by roy.granit • 790
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Differential Expression and Co-expression analysis from Cell type-specific datasets
ribotag wgcna deseq2 trap written 5 weeks ago by volvicpellegrino • 0 • updated 5 weeks ago by benformatics • 640
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Selecting methods for performing pairwise RNAseq analysis without replicates
tissues deseq2 deseq rna-seq hisat2 written 5 weeks ago by bioinforesearchquestions • 200 • updated 5 weeks ago by i.sudbery ♦ 4.1k
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FPKM or rlog from DEseq2 for machine learning analysis
normalization fpkm deseq2 rna-seq written 16 months ago by Silvia • 10 • updated 5 weeks ago by Charles Warden ♦ 6.4k
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DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
R deseq2 rna-seq written 5 weeks ago by jaqx008 • 40 • updated 5 weeks ago by i.sudbery ♦ 4.1k
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can not obtain DESeq2 results
differentional expression R deseq2 rna-seq written 5 weeks ago by zehrahazalsezer • 0
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batch effect Deseq2 Wald test
deseq2 wald test rna-seq batch written 6 weeks ago by mariannapauletto • 0 • updated 5 weeks ago by Devon Ryan ♦ 88k
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RNA-Seq: X samples and X batches
batch effects deseq2 rna-seq edger written 6 weeks ago by Behram Radmanesh • 10 • updated 6 weeks ago by WouterDeCoster ♦ 37k
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Salmon: Any downstream DEA tools which uses abundance estimate variation information?
deseq2 salmon written 6 weeks ago by Thomas • 90
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5 follow
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Analyzing 3' RNA seq library with DESeq2
deseq2 rna-seq written 8 weeks ago by roy.granit • 790
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How to test gene expression variability - expression differences independent of genotype
gene expression deseq2 rna-seq written 7 weeks ago by A. Domingues • 1.8k
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How to perform lncRNA differential gene expression analysis (unstranded)?
deseq2 lncrna unstranded rna-seq lincrnas written 8 weeks ago by mmitra • 30 • updated 8 weeks ago by JC ♦ 7.6k
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DESEQ2 design analysis
deseq2 rna-seq written 8 weeks ago by Teresa • 20 • updated 8 weeks ago by WouterDeCoster ♦ 37k
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5 follow
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Compare SE and PE gene expression data.
deseq2 rna-seq written 9 weeks ago by sangram_keshari • 130 • updated 9 weeks ago by johnsonnathant • 80
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Values in the data.frame are negative by RMA normalization, how deseq2 package work for that data?
rma deseq2 rna-seq written 9 weeks ago by dqz377977905 • 0 • updated 9 weeks ago by genomax ♦ 64k
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What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
pca plot distance matrix deseq2 rna-seq written 9 weeks ago by swarajgaikwad15 • 0
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