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<prev • 330 results • page 1 of 11 • next >
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DESeq2 "Not full rank" Error
deseq2 design written 1 day ago by Cecelia • 10 • updated 1 day ago by swbarnes2 ♦ 3.4k
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5 follow
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Diffbind - Very high proportion of significant peaks
diffbind deseq2 atac-seq written 17 days ago by kautilya • 360
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Clarification on how DSEeq2 Dispersion Curve is Generated
gene correction deseq2 dispersion rna-seq written 2 days ago by brismiller • 10 • updated 2 days ago by Kevin Blighe ♦ 17k
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Sample outlier detection in DESeq2
deseq2 rna-seq written 3 days ago by nikitavlassenko • 0 • updated 3 days ago by genomax ♦ 46k
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highlighting specific genes (from a user-supplied list) in a Volcano plot in R
R deseq2 volcano plot written 6 days ago by Eskimo • 50
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Job: Bioinformatics Analyst in University Virginia Bioinformatics Core
R bioconductor deseq2 jobs job written 8 days ago by Stephen ♦ 2.6k
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Note on DESeq2
deseq2 rna-seq written 15 days ago by Uday Madappa • 40 • updated 11 days ago by h.mon ♦ 13k
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Additional p-value adjustment for multiple comparisons in DESeq2
p-value multiple comparisons deseq2 rna-seq written 18 days ago by goodeats12 • 0 • updated 18 days ago by Devon Ryan ♦ 78k
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DESeq2 modelling and Wald's test
deseq2 rna-seq written 18 days ago by Uday Madappa • 40 • updated 18 days ago by Kevin Blighe ♦ 17k
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Null hypothesis in DESeq2
null hypothesis deseq2 written 19 days ago by Uday Madappa • 40
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120
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[DeSeq2] some values in assay are negative
R deseq2 rna-seq written 21 days ago by pentium3-user • 0
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Deseq2 Differential Expression (9 samples 3 conditions)
deseq2 rna-seq gsea written 22 days ago by bryce.kirby • 0 • updated 22 days ago by h.mon ♦ 13k
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Deseq2 Differentially Expressed Genes between conditions
R deseq2 rna-seq differential expression gsea written 24 days ago by bryce.kirby • 0 • updated 23 days ago by Buffo • 1.1k
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Differential Expression in DEseq2 to GSEA (9 samples, 3 conditions)
stringtie deseq2 rna-seq differential expression written 27 days ago by bryce.kirby • 0 • updated 26 days ago by Kevin Blighe ♦ 17k
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140
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Comparing work done on RNA seq data
deseq2 rna-seq differential expression analysis written 26 days ago by Uday Madappa • 40
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Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 27 days ago by bryce.kirby • 0
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5 follow
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Using DESeq2 results for building a classifier
deseq2 differentially expressed genes rna-seq written 4 weeks ago by Uday Madappa • 40
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Check variance stabilization transformation ?
deseq2 variance stabilization rna-seq written 4 weeks ago by debitboro • 70 • updated 4 weeks ago by swbarnes2 ♦ 3.4k
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Differential gene expression analysis
differential expressed genes deseq2 rna-seq written 4 weeks ago by Uday Madappa • 40 • updated 4 weeks ago by zx8754 ♦ 4.1k
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Normalizing count data with several treatment dosages
normalization deseq2 qc rna-seq edger written 5 weeks ago by firatuyulur • 190
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Differential expression gene analysis
deseq2 rna-seq written 5 weeks ago by Uday Madappa • 40 • updated 5 weeks ago by h.mon ♦ 13k
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differential expression analysis
deseq2 rna-seq differential expression analysis written 5 weeks ago by Uday Madappa • 40 • updated 5 weeks ago by caggtaagtat • 180
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DESeq2 "DESeqDataSetFromMatrix" error
deseq2 rna-seq differential expression written 5 weeks ago by Ricky • 20
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DESeq2 time series data and age and gender correction
R time series deseq2 rna-seq written 6 weeks ago by Lalit • 10 • updated 5 weeks ago by Kevin Blighe ♦ 17k
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comparing DEGs with same treatment but different control batch
deseq2 correlation rna-seq statistics written 7 weeks ago by firatuyulur • 190 • updated 6 weeks ago by swbarnes2 ♦ 3.4k
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how to control age and gender effect in expression data using DESeq2
deseq2 rna-seq diffenrential expression analysis written 7 weeks ago by Lalit • 10
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RNA seq analysis when many genes are differentially expressed
deseq2 cuffdiff rna-seq edger written 7 weeks ago by mccormack • 20 • updated 7 weeks ago by Kevin Blighe ♦ 17k
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deseq dataset from star
deseq2 star rna-seq written 15 months ago by Pals • 1.3k • updated 7 weeks ago by Biostar ♦♦ 20
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Cluster strategy for a time-series analysis in DESeq2
hclust deseq2 rna-seq timecourse written 7 weeks ago by Cecelia • 10
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DESEQ analysis contain rlog formation?
rlog deseq2 rna-seq raw counts written 8 weeks ago by soojinima • 10
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