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<prev • 206 results • page 1 of 7 • next >
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how investigate genes after meta-analysis in each experiment
deseq2 meta-analysis metaseq deg written 1 day ago by Edalat • 10
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129
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1
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How to perform DESeq2 based on paired sample test?
deseq2 rna-seq written 4 days ago by Xiaokang ZH • 20 • updated 4 days ago by Devon Ryan ♦ 68k
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228
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How to analyze differentially expressed lncRNA from total RNA
deseq2 rna-seq lncrna written 8 days ago by ta_awwad • 90 • updated 8 days ago by EagleEye • 4.1k
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100
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How does deseq2 encode more than 2 levels
deseq2 rna-seq differential expression written 12 days ago by -_- • 420
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2
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289
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Isoform Differential Expression Analysis
ebseq deseq2 rsem rna-seq written 5 months ago by john • 30 • updated 12 days ago by kristoffer.vittingseerup • 100
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1
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316
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1
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Add GenomicRanges to SummarizedExperiment
deseq2 summarizedexperiment granges written 5 months ago by s.w.vanderlaan • 40 • updated 14 days ago by WouterDeCoster ♦ 19k
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135
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Install DESeq2 and edgeR with Anaconda
deseq2 anaconda edger written 15 days ago by salamandra • 60 • updated 15 days ago by Sean Davis ♦ 23k
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130
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7 follow
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Conflicting results with DESeq2 between versions
R deseq2 rna-seq written 18 days ago by BioBing • 70
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129
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DeSeq2 MA plot
maplot deseq2 rna-seq written 22 days ago by niu.shengyong • 0
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102
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1
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RNAseq - matrix design in DESeq2 or edgeR
deseq2 rna-seq edger matrix design written 27 days ago by xioli2013 • 0
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Tool: DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
limma deseq2 tool edger rna-seq written 11 months ago by WouterDeCoster ♦ 19k
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105
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1
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DESeq2 + de novo assembly
de novo trinity deseq2 rna-seq dge written 4 weeks ago by pablo61991 • 10 • updated 4 weeks ago by Biojl • 1.5k
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Using RPK counts as DESeq2 input
deseq2 written 5 weeks ago by adityabandla • 20 • updated 5 weeks ago by Devon Ryan ♦ 68k
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DESeq2: Find differentially expressed genes specific to one condition
deseq2 rna-seq written 24 months ago by Christian • 2.5k • updated 5 weeks ago by Martombo • 1.7k
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127
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Correct pipeline for DESeq analysis
deseq2 rna-seq written 6 weeks ago by Lila M • 280
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Featurecounts to DESEq2 - How to merge biological replicates?
deseq2 featurecounts rna-seq written 6 weeks ago by Sreeraj Thamban • 30
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150
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1
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Discrepancy in DESeq2 fold change
R deseq2 rna-seq written 6 weeks ago by sophie.ehresmann • 0 • updated 6 weeks ago by Santosh Anand • 2.3k
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too many adj pvalues = 1
p-value deseq2 rna-seq written 7 weeks ago by Illinu • 80 • updated 7 weeks ago by Devon Ryan ♦ 68k
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153
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Normalization methods for metagenomics WGS data (not 16S data)
normalization deseq2 edger written 8 weeks ago by David • 50
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Select top differentially expressed genes based on both p-value and fold-change
differential-expression deseq2 rna-seq written 8 weeks ago by RT • 290 • updated 8 weeks ago by Santosh Anand • 2.3k
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133
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Fasta to gff with custom set of genes
fasta genome gff deseq2 rna-seq written 9 weeks ago by tlorin • 160 • updated 9 weeks ago by Macspider • 1.2k
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14 follow
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Can someone please explain in simple terms how DESeq2 works?
deseq2 written 2.4 years ago by BioStars1993 • 60 • updated 10 weeks ago by Biostar ♦♦ 20
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Deseq2/Dexseq: why is LRT significant if estimated coefficients under two conditions are almost the same?
dexseq R deseq2 rna-seq written 10 weeks ago by cindyz • 10
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SummarizeOverlaps [R] Status 127 error
R status127 summarizeoverlaps deseq2 error written 23 months ago by lillyhchen • 0 • updated 10 weeks ago by zx8754 ♦ 3.7k
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number of significant genes different between 2 different runs of DESEQ2
deseq2 rna-seq written 11 weeks ago by modockesner • 0
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6 follow
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How to define a non differentially expressed gene?
deseq2 edger deg non-deg rna-seq written 3 months ago by xieshaojun0621 • 80 • updated 11 weeks ago by Michael Love • 1.4k
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3
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191
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3
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How to read multiple samples with DESeq2?
R deseq2 rna-seq written 11 weeks ago by mirzaei86.vahid • 10 • updated 11 weeks ago by vchris_ngs • 3.5k
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Find all genes that significantly correlate with a particular geneA?
continuous variable deseq2 correlation rna-seq written 11 weeks ago by tolgaturant • 20 • updated 11 weeks ago by theobroma22 • 700
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DESeq2 object problem with padj
deseq2 padj written 11 weeks ago by pennakiza • 0 • updated 11 weeks ago by Devon Ryan ♦ 68k
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Gene expression variation between conditions
R deseq2 written 3 months ago by User000 • 240
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