Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: deseq2 • reset
or   Classic search
<prev • 515 results • page 1 of 18 • next >
0
votes
0
answers
10
views
0
answers
DEG and low counts
rnaseq deseq2 ma plot low-counts written 1 hour ago by NielQC • 10
0
votes
1
answer
78
views
1
answer
Correlating miRNA count from DeSEQ2 with Transcript FPKM from cuffdiff
cuffdiif normalization deseq2 transcript mirna written 4 days ago by arisarkar88 • 0 • updated 3 hours ago by Kevin Blighe ♦ 41k
2
votes
1
answer
109
views
1
answer
RPM data analysis with DESeq2
rpm data deseq2 written 4 days ago by Pamira • 10 • updated 3 days ago by manuel.belmadani • 730
0
votes
0
answers
74
views
0
answers
Applying lfcShrink to a time series analysis
time-series deseq2 rna-seq written 4 days ago by rrbutleriii • 50
0
votes
1
answer
284
views
1
answer
how to define different batches in DESeq2 in Galaxy
deseq2 batch effect removal rna-seq written 10 months ago by nazaninhoseinkhan • 360 • updated 9 days ago by Biostar ♦♦ 20
0
votes
0
answers
62
views
0
answers
how to solve the Usegalaxy RNASeq analysis DESeq2 error
rnaseq ngs deseq2 usegalaxy written 11 days ago by Kian • 40
0
votes
0
answers
106
views
0
answers
Differential gene expression analysis: how different could be the number of samples for the two conditions being compared?
number of samples deseq2 rna-seq written 14 days ago by mmitra • 30
2
votes
1
answer
127
views
1
answer
Differential expression of all genes vs only annotated genes
rnaseq deseq2 rna-seq written 15 days ago by transcripto • 0 • updated 15 days ago by h.mon ♦ 24k
1
vote
0
answers
150
views
0
answers
removing confounding batch effect with RUVseq
ruvseq deseq2 rna-seq batch effect written 4 weeks ago by grant.hovhannisyan • 1.5k • updated 21 days ago by Biostar ♦♦ 20
2
votes
0
answers
113
views
0
answers
DESeq2-issues with input data
smallrna deseq2 rna-seq written 22 days ago by vivek37373 • 0 • updated 22 days ago by genomax ♦ 65k
3
votes
0
answers
132
views
6 follow
0
answers
Can I ignore these MSTRG genes in downstream analysis (pantherdb.org)?
stringtie deseq2 rna-seq written 22 days ago by Fawzi Yassine • 10
5
votes
2
answers
104
views
2
answers
DESeq2 contrasts - creating different objects or not?
experimental design deseq2 rna-seq written 23 days ago by r_mvl • 10 • updated 23 days ago by Ashastry • 60
0
votes
0
answers
79
views
0
answers
Color a supplied list of genes a different color on DESeq2 MAplot
maplot deseq2 rna-seq written 25 days ago by lauren.fehrman • 0
4
votes
1
answer
135
views
1
answer
DESeq interactions: What genes that are different between two experiments affects the conditions
dea interactions deseq2 rna-seq written 25 days ago by raquelgarza95 • 40 • updated 25 days ago by swbarnes2 ♦ 5.2k
2
votes
0
answers
152
views
0
answers
DESeq2 log2FoldChange vs Salmon log2 TPM
R deseq2 salmon rna-seq written 25 days ago by liartom2 • 10 • updated 25 days ago by Antonio R. Franco • 4.0k
1
vote
1
answer
552
views
1
answer
How does deseq2 encode more than 2 levels
deseq2 rna-seq differential expression written 22 months ago by -_- • 790 • updated 25 days ago by Biostar ♦♦ 20
1
vote
1
answer
119
views
1
answer
DESeq2: subset dds or vsd to plot PCA with specific genes only
R deseq2 plotpca rna-seq subset written 25 days ago by Cece • 0 • updated 25 days ago by Kevin Blighe ♦ 41k
2
votes
1
answer
125
views
1
answer
model design in rna seq - deseq2
model-design number of deg deseq2 rna-seq written 26 days ago by acebolladaso.iacs • 10 • updated 26 days ago by tw617 • 30
0
votes
0
answers
92
views
0
answers
p-values for metaRNASeq package
R deseq2 metarnaseq rna-seq written 29 days ago by mr.monahton • 0
1
vote
0
answers
148
views
0
answers
How can I analyze this data in Deseq?
rnaseq R deseq2 deseq written 29 days ago by MAPK • 1.4k
0
votes
0
answers
116
views
0
answers
Double checking R model
deseq2 rna-seq written 4 weeks ago by andrea.etter • 0
1
vote
1
answer
114
views
1
answer
Interpreting DESeq2 Results (head)
result intepretation deseq2 written 5 weeks ago by jaqx008 • 40 • updated 5 weeks ago by collmerr • 20
0
votes
0
answers
137
views
0
answers
Differential expression analysis for time course data
deseq2 rna-seq written 5 weeks ago by bharata1803 • 420
0
votes
0
answers
112
views
0
answers
"Manual" enrichment analysis of gene set for genes associated with cell types
deseq2 rna-seq gsea gene enrichment analysis written 5 weeks ago by rebeliscu • 0
1
vote
1
answer
155
views
1
answer
DESeq2 - Between sample normalization of train/test subsets
normalization deseq2 rna-seq survival tcga written 5 weeks ago by ml_researcher • 0 • updated 5 weeks ago by Asaf ♦ 5.5k
0
votes
1
answer
141
views
1
answer
eclip-seq: Using edgeR/DESeq2 for normalizing peaks of IP/Input of transcript level
clip-seq eclip-seq deseq2 edger written 7 weeks ago by gnilihzeux • 0
1
vote
1
answer
203
views
1
answer
How to convert log2FC (Fold Change) obtained by differential expression analysis by DESeq2 to FC
deseq2 log2fc differential expression written 6 weeks ago by sole.r.v • 0 • updated 5 weeks ago by ZheFrench • 210
8
votes
1
answer
250
views
1
answer
DESeq2 and integers values
deseq2 rna-seq written 6 weeks ago by Morris_Chair • 90
7
votes
5
answers
241
views
8 follow
5
answers
miRNA differential expression
de deseq2 rna-seq mirna written 6 weeks ago by anshulmbi • 0
0
votes
0
answers
197
views
0
answers
Batch correction: Before and After Visualisation
combat deseq2 svaseq rna-seq written 6 weeks ago by prabin.dm • 30
<prev • 515 results • page 1 of 18 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 7 minutes ago
  • United States, 10 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 770 users visited in the last hour