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<prev • 42 results • page 1 of 2 • next >
6
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2
answers
186
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2
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Print Differentially Expressed Exons From Dexseq Results
dexseq rna-seq written 21 days ago by justinkablan225 • 10
2
votes
1
answer
1.4k
views
1
answer
HtSeq installation error
htseq dexseq rna-seq written 2.2 years ago by BM • 40 • updated 4 weeks ago by ATpoint ♦ 18k
0
votes
1
answer
163
views
1
answer
DEXseq Error - SummarizedExperiment
dexseq deseq2 rna-seq summarizedexperiment written 6 weeks ago by BM • 40 • updated 5 weeks ago by benformatics • 890
2
votes
1
answer
175
views
1
answer
RNA-Seq Analysis with DEXSeq
dexseq rna-seq written 10 weeks ago by justinkablan225 • 10 • updated 10 weeks ago by shawn.w.foley • 750
0
votes
1
answer
219
views
1
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error in prepare annotation script DEXseq
dexseq rnaseq ensamble gencode deu written 5 months ago by Lila M • 480 • updated 12 weeks ago by vida.t • 0
1
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0
answers
280
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0
answers
Some problems with DEXSEQ analyse
dexseq expression rna-seq isoform written 3 months ago by darbinator • 190
1
vote
1
answer
206
views
1
answer
How does DEXSeq calculate exon usage values
dexseq splicing exon usage rna-seq written 5 months ago by sneha108.ss • 0 • updated 5 months ago by Nicolas Rosewick ♦ 7.7k
1
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0
answers
318
views
0
answers
Help interpreting error from DEXSeq
dexseq rna-seq written 7 months ago by squando • 10 • updated 7 months ago by Lance • 30
2
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1
answer
447
views
1
answer
Sorting BAM files from HISAT2 for DEXSeq
dexseq rna-seq hisat2 written 7 months ago by squando • 10 • updated 7 months ago by Ian ♦ 5.5k
1
vote
1
answer
687
views
1
answer
Issue with DEXSeq installation
dexseq R bioconductor written 17 months ago by Yuka Takemon • 20 • updated 17 months ago by Hussain Ather • 920
0
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0
answers
582
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0
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Removing genes found on two (or more) chromosomes from gtf file
gtf dexseq awk python bash written 19 months ago by arta • 540
2
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0
answers
586
views
0
answers
Error when run testForDEU DEXSeq
dexseq rnaseq error deu written 20 months ago by Lila M • 480
5
votes
1
answer
749
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1
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Why does GFF prepared using dexseq_prepare_annotation shows different exon number than UCSC genome browser
dexseq exons dexseq_prepare_annotation written 21 months ago by komal.rathi • 3.4k • updated 21 months ago by Devon Ryan ♦ 90k
2
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0
answers
1.1k
views
0
answers
How to interpret DEXseq results in therms of significance
dexseq exon rna-seq written 21 months ago by Lila M • 480
0
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0
answers
998
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0
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how to use DEXSeq with raw exon count matrix downloaded from TCGA
dexseq R exon rna-seq written 23 months ago by ren.yingxue • 0 • updated 21 months ago by Biostar ♦♦ 20
1
vote
1
answer
836
views
1
answer
DEXSeq transcripts per condition
dexseq rna-seq written 22 months ago by mail2steff • 50 • updated 21 months ago by Lila M • 480
1
vote
0
answers
712
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0
answers
Pipeline for analysing RNA-seq exon level data with lot of samples?
dexseq deseq2 diffsplice diffsplicedge rna-seq written 23 months ago by sarin.heikki.v • 10
0
votes
1
answer
525
views
1
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dexseq_count.py: strandness of data from portal.gdc.cancer.gov
dexseq tcga dexseq_count written 2.0 years ago by Lila M • 480 • updated 2.0 years ago by Istvan Albert ♦♦ 80k
1
vote
2
answers
955
views
5 follow
2
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TCGA raw counts DexSeq
dexseq tcga rna-seq written 2.0 years ago by Newbie • 0 • updated 2.0 years ago by H.Hasani • 760
0
votes
0
answers
597
views
0
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DEXSeq batch effects issue
dexseq rna-seq written 2.0 years ago by ag1194 • 0
3
votes
1
answer
2.2k
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1
answer
problems installing HTSeq
htseq dexseq rna-seq written 2.1 years ago by Lila M • 480 • updated 2.1 years ago by Devon Ryan ♦ 90k
2
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0
answers
1.1k
views
0
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Deseq2/Dexseq: why is LRT significant if estimated coefficients under two conditions are almost the same?
dexseq R deseq2 rna-seq written 2.2 years ago by cindyz • 30
0
votes
0
answers
779
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0
answers
compare rows of colData and count Matrix
dexseq matrix deseq written 2.4 years ago by Assa Yeroslaviz • 1.2k
0
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0
answers
623
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0
answers
Appropriate to apply RUVSeq to exon bin counts for DEXSeq?
dexseq R bioconductor ruvseq rna-seq written 2.5 years ago by Adamc • 590
0
votes
0
answers
684
views
0
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converting dexseq_count.py 's output of Gene-exon ID to Transcript Id
dexseq annotation exon rna-seq transcript written 2.5 years ago by Ice P • 0
1
vote
1
answer
1.5k
views
5 follow
1
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Simultaneously adding two different covariates in the model gives error in DESeq2
dexseq R next-gen deseq2 rna-seq written 2.5 years ago by fizer • 30 • updated 2.5 years ago by Carlo Yague • 4.5k
2
votes
1
answer
1.4k
views
1
answer
DEXSeq for exon counting & package name for human?
dexseq exon counting rna-seq written 3.4 years ago by tinmad • 10 • updated 2.5 years ago by Biostar ♦♦ 20
2
votes
2
answers
1000
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2
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Significance within conditions
dexseq deseq2 cuffdiff kallisto rna-seq written 3.0 years ago by Assa Yeroslaviz • 1.2k
3
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0
answers
1.5k
views
0
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DEXSeq install problem
dexseq R bioconductor deseq2 rna-seq written 3.1 years ago by bartosovic.marek • 30
0
votes
1
answer
1.5k
views
1
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dexseq_count.py gives zero counts for any exon
dexseq exon dexseq_count.py written 3.3 years ago by laura.fancello • 0 • updated 3.3 years ago by geek_y ♦ 9.7k
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