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<prev • 38 results • page 1 of 2 • next >
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error in prepare annotation script DEXseq
dexseq rnaseq ensamble gencode deu written 26 days ago by Lila M • 460
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93
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How does DEXSeq calculate exon usage values
dexseq splicing exon usage rna-seq written 5 weeks ago by sneha108.ss • 0 • updated 5 weeks ago by Nicolas Rosewick ♦ 7.3k
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Help interpreting error from DEXSeq
dexseq rna-seq written 3 months ago by squando • 10 • updated 3 months ago by Lance • 30
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255
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Sorting BAM files from HISAT2 for DEXSeq
dexseq rna-seq hisat2 written 3 months ago by squando • 10 • updated 3 months ago by Ian ♦ 5.3k
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Issue with DEXSeq installation
dexseq R bioconductor written 13 months ago by Yuka Takemon • 20 • updated 13 months ago by Hussain Ather • 890
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Removing genes found on two (or more) chromosomes from gtf file
gtf dexseq awk python bash written 14 months ago by arta • 540
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503
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Error when run testForDEU DEXSeq
dexseq rnaseq error deu written 15 months ago by Lila M • 460
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Why does GFF prepared using dexseq_prepare_annotation shows different exon number than UCSC genome browser
dexseq exons dexseq_prepare_annotation written 16 months ago by komal.rathi • 3.4k • updated 16 months ago by Devon Ryan ♦ 88k
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How to interpret DEXseq results in therms of significance
dexseq exon rna-seq written 17 months ago by Lila M • 460
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how to use DEXSeq with raw exon count matrix downloaded from TCGA
dexseq R exon rna-seq written 18 months ago by ren.yingxue • 0 • updated 17 months ago by Biostar ♦♦ 20
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DEXSeq transcripts per condition
dexseq rna-seq written 17 months ago by mail2steff • 50 • updated 17 months ago by Lila M • 460
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Pipeline for analysing RNA-seq exon level data with lot of samples?
dexseq deseq2 diffsplice diffsplicedge rna-seq written 18 months ago by sarin.heikki.v • 10
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dexseq_count.py: strandness of data from portal.gdc.cancer.gov
dexseq tcga dexseq_count written 20 months ago by Lila M • 460 • updated 20 months ago by Istvan Albert ♦♦ 79k
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TCGA raw counts DexSeq
dexseq tcga rna-seq written 20 months ago by Newbie • 0 • updated 20 months ago by H.Hasani • 640
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509
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DEXSeq batch effects issue
dexseq rna-seq written 20 months ago by ag1194 • 0
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problems installing HTSeq
htseq dexseq rna-seq written 21 months ago by Lila M • 460 • updated 21 months ago by Devon Ryan ♦ 88k
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HtSeq installation error
htseq dexseq rna-seq written 21 months ago by BM • 40
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Deseq2/Dexseq: why is LRT significant if estimated coefficients under two conditions are almost the same?
dexseq R deseq2 rna-seq written 22 months ago by cindyz • 30
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689
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compare rows of colData and count Matrix
dexseq matrix deseq written 2.1 years ago by Assa Yeroslaviz • 1.1k
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536
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Appropriate to apply RUVSeq to exon bin counts for DEXSeq?
dexseq R bioconductor ruvseq rna-seq written 2.1 years ago by Adamc • 570
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converting dexseq_count.py 's output of Gene-exon ID to Transcript Id
dexseq annotation exon rna-seq transcript written 2.1 years ago by Ice P • 0
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5 follow
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Simultaneously adding two different covariates in the model gives error in DESeq2
dexseq R next-gen deseq2 rna-seq written 2.1 years ago by fizer • 20 • updated 2.1 years ago by Carlo Yague • 4.4k
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DEXSeq for exon counting & package name for human?
dexseq exon counting rna-seq written 3.1 years ago by tinmad • 10 • updated 2.2 years ago by Biostar ♦♦ 20
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902
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Significance within conditions
dexseq deseq2 cuffdiff kallisto rna-seq written 2.6 years ago by Assa Yeroslaviz • 1.1k
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DEXSeq install problem
dexseq R bioconductor deseq2 rna-seq written 2.8 years ago by bartosovic.marek • 30
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dexseq_count.py gives zero counts for any exon
dexseq exon dexseq_count.py written 3.0 years ago by laura.fancello • 0 • updated 3.0 years ago by geek_y ♦ 9.1k
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DEXSeq run does not produce results
dexseq exon usage rna-seq written 3.4 years ago by adnan.niazi • 0
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Query about DEXSeq for differential exon usage analysis
dexseq next-gen pca rna-seq written 3.4 years ago by deshpandenandan1975 • 0
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998
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DEXSeq memory issue
dexseq rna-seq written 3.8 years ago by Anil Kesarwani • 80 • updated 3.8 years ago by Devon Ryan ♦ 88k
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Differential quantification of splice junction
dexseq rna-seq written 3.8 years ago by Anil Kesarwani • 80 • updated 3.8 years ago by SES ♦ 8.1k
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