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<prev • 54 results • page 1 of 2 • next >
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how to use DEXSeq with raw exon count matrix downloaded from TCGA
dexseq R exon rna-seq written 3.5 years ago by ren.yingxue • 0 • updated 12 weeks ago by Biostar ♦♦ 20
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118
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Is it possible to look at gene-level expression using DEXseq?
dexseq rna-seq written 3 months ago by dan • 0
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117
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Trouble finding exons in DEXseq
dexseq R rna-seq sequencing written 3 months ago by dan • 0
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145
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DEXSeq for isoform data
dexseq rna-seq isoform written 3 months ago by inah • 0
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158
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DESeq2 and DEXSeq
dexseq trinity deseq2 written 3 months ago by pthom010 • 0
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208
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1
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DEXSeq DEXSeqResults normalized counts
dexseq rna-seq rstats written 4 months ago by Gregor Rot • 450
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157
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Error at DEXSeqHTML
dexseq written 5 months ago by nitandressa • 0 • updated 5 months ago by _r_am ♦ 32k
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271
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DEXSeq gives most of the reads as "_empty"
dexseq software error next-gen alignment rna-seq written 8 months ago by rohitsatyam102 • 220 • updated 6 months ago by Biostar ♦♦ 20
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2
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Read count per exon per transcript
dexseq read count rna-seq bam file written 5.9 years ago by wan.fahmi • 0 • updated 6 months ago by Biostar ♦♦ 20
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382
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1
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DEXSeq aggregates two different genes together
dexseq rna-seq written 8 months ago by rohitsatyam102 • 220 • updated 8 months ago by Kevin Blighe ♦ 69k
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1
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1
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Pipeline for analysing RNA-seq exon level data with lot of samples?
dexseq deseq2 diffsplice diffsplicedge rna-seq written 3.5 years ago by sarin.heikki.v • 10 • updated 8 months ago by Biostar ♦♦ 20
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DEXSeq Installation Error
dexseq rna-seq alternative splicing written 15 months ago by deepak18 • 10 • updated 13 months ago by Biostar ♦♦ 20
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597
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featureCount error - cannot identify gene_id
dexseq rsubread featurecount software error written 13 months ago by seung.ho.steven.choi • 0
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5 follow
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Some problems with DEXSEQ analyse
dexseq expression rna-seq isoform written 23 months ago by darbinator • 230 • updated 14 months ago by kristoffer.vittingseerup • 3.5k
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348
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Problem during read counting with DEXSeq
dexseq rna-seq written 14 months ago by deepak18 • 10
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335
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DEXSeq output from Galaxy
dexseq galaxy written 15 months ago by anand.gururajan • 0 • updated 15 months ago by WouterDeCoster ♦ 45k
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2
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819
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2
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Print Differentially Expressed Exons From Dexseq Results
dexseq rna-seq written 19 months ago by justinkablan225 • 10
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1
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2.1k
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1
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HtSeq installation error
htseq dexseq rna-seq written 3.7 years ago by BM • 70 • updated 20 months ago by ATpoint ♦ 44k
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1
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708
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5 follow
1
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DEXseq Error - SummarizedExperiment
dexseq deseq2 rna-seq summarizedexperiment written 20 months ago by BM • 70 • updated 20 months ago by benformatics • 2.0k
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875
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1
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RNA-Seq Analysis with DEXSeq
dexseq rna-seq written 21 months ago by justinkablan225 • 10 • updated 21 months ago by shawn.w.foley • 1.2k
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1
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787
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1
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error in prepare annotation script DEXseq
dexseq rnaseq ensamble gencode deu written 2.0 years ago by Lila M • 870 • updated 22 months ago by vida.t • 0
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How does DEXSeq calculate exon usage values
dexseq splicing exon usage rna-seq written 2.0 years ago by sneha108.ss • 0 • updated 2.0 years ago by Nicolas Rosewick ♦ 9.3k
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Help interpreting error from DEXSeq
dexseq rna-seq written 2.2 years ago by squando • 10 • updated 2.2 years ago by Lance • 30
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1
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1.2k
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1
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Sorting BAM files from HISAT2 for DEXSeq
dexseq rna-seq hisat2 written 2.2 years ago by squando • 10 • updated 2.2 years ago by Ian ♦ 5.7k
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1
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Issue with DEXSeq installation
dexseq R bioconductor written 3.0 years ago by Yuka Takemon • 40 • updated 3.0 years ago by Hussain Ather • 940
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956
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Removing genes found on two (or more) chromosomes from gtf file
gtf dexseq awk python bash written 3.1 years ago by arta • 620
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882
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Error when run testForDEU DEXSeq
dexseq rnaseq error deu written 3.2 years ago by Lila M • 870
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1
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1.4k
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1
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Why does GFF prepared using dexseq_prepare_annotation shows different exon number than UCSC genome browser
dexseq exons dexseq_prepare_annotation written 3.3 years ago by komal.rathi • 3.7k • updated 3.3 years ago by Devon Ryan ♦ 98k
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How to interpret DEXseq results in therms of significance
dexseq exon rna-seq written 3.4 years ago by Lila M • 870
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1
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DEXSeq transcripts per condition
dexseq rna-seq written 3.4 years ago by mail2steff • 60 • updated 3.4 years ago by Lila M • 870
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