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Tool: Dgidb - Mining The Druggable Genome

tool database dgidb interaction gene drug written 4.5 years ago by Obi Griffith ♦ 16k

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Tool: Dgidb - Mining The Druggable Genome

tool database dgidb interaction gene drug written 4.5 years ago by Obi Griffith ♦ 16k • updated 3.4 years ago by Malachi Griffith ♦ 16k

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Recent Replies

C: normalization when calling CNV areas on a genome-wide scale in tumor-germline sa by Chris Miller ♦ 19k
If given samtools input, copy cat will exclude chromosomes from depth normalization that appear t...
C: Query regarding RCSBPDB by jrj.healey • 3.9k
Yeah that should be fairly straight forward, though this is a basic script and can't do it at the...
C: How to extrach gene names and peaks from BedGraph or BigWig files by hkarakurt • 10
Thank you for your help. I think I should start from raw data to have better result.
C: STAR Unmapped reads by Devon Ryan ♦ 78k
Ah Lexogen, that explains things. You're not going to get better then, those libraries produce a ...
C: VCF file manipulation for extracting the required information by seta • 960
Hi finswimmer, Thank you for your reply. I'll try it.
C: Where can I download homo sapiens gene locations file including ensembl gene id, by genomax ♦ 46k
https://www.biostars.org/u/6141/ : Agreed. Depending on how savvy OP is they can choose an approp...
C: Combine the fastq files by Devon Ryan ♦ 78k
Is there a lane component to the read group?
C: Where can I download homo sapiens gene locations file including ensembl gene id, by Mike Smith • 580
You can use a programmatic interface to BioMart like [biomaRt][1] and then your script records th...
C: Combine the fastq files by h.mon ♦ 13k
If you want to do variant calling with GATK (maybe other tools?), it is important to map them sep...
C: STAR Unmapped reads by prathyushareddy87 • 0
I am just wondering if i be liberal with the STAR parameters would I be able to improve my mappin...
C: Questions about quantifying mRNA data by h.mon ♦ 13k
I updated my answer. No, STAR with `--quantMode GeneCounts` does not count multi-mapping reads....
C: Combine the fastq files by genomax ♦ 46k
If what @Devon says is right i.e. `L1_1 `is actually `L001_R1` and `L2_1` is `L002_R1` then you w...

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