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<prev • 46 results • page 1 of 2 • next >
1
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Diffbind- results different every time I run it
software error diffbind written 18 days ago by francesca3 • 20
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1
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938
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1
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Error while annotating with Chipseeker
chip-seq diffbind chipseeker annotation written 13 months ago by hamaor • 0 • updated 9 weeks ago by michal.okoniewski • 0
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0
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82
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Changing the color of significantly up- or downregulated peaks in volcano plot from Diffbind
volcano diffbind volcano plot written 9 weeks ago by collmerr • 30
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110
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0
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How to make a read count matrix from multiple bed files generated by ROSE
rose chipseq diffbind h3k27ac super-enhancers written 5 months ago by Researcher • 50
8
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3
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310
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6 follow
3
answers
DiffBind to call differential binding of Super-enhancers from ROSE
rose chipseq diffbind super-enhancers written 5 months ago by Researcher • 50 • updated 5 months ago by sim.j.baum • 50
1
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2
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360
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2
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DiffBind without replicates
R diffbind chip-seq written 5 months ago by zhangdengwei • 60
1
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1
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332
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1
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Which method is the best for using in "dba.count" in Diffbind R package
diffbind chip-seq written 6 months ago by sikhtechai • 30 • updated 6 months ago by Rory Stark • 600
0
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0
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180
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0
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ChIP-seq differential binding analysis tools
csaw diffbind chip-seq written 6 months ago by Jingyue • 30
3
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1
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505
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1
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 7 months ago by Researcher • 50 • updated 6 months ago by Rory Stark • 600
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312
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0
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 6 months ago by Researcher • 50
0
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1
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719
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 2.0 years ago by erwan.scaon • 750 • updated 8 months ago by kieran.short • 0
0
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1
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344
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1
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DiffBind package showing warnings and unable to analyse my data
diffbind chip-seq written 8 months ago by chaudharyc61 • 20 • updated 8 months ago by Rory Stark • 600
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0
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148
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0
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diffbind dba.plotvolcano bLabels option use genames instead of numbers
volcano diffbind written 9 months ago by theodore • 60
4
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1
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450
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1
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How to properly organize a DiffBind analysis to normalize data across conditions (ChIP-seq)
R diffbind chip-seq written 10 months ago by msimmer92 • 250 • updated 10 months ago by ATpoint ♦ 32k
0
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1
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209
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1
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Diffbind affinity based analysis
diffbind chip-seq affinity analysis written 10 months ago by rapmic • 0 • updated 10 months ago by Rory Stark • 600
2
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2
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1.3k
views
2
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Convert DiffBind output to standard BED or NarrowPeak format
bed diffbind chip-seq narrowpeak written 2.5 years ago by rbronste • 340 • updated 11 months ago by corinne_hutfilz • 0
0
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2
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634
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2
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how to retrieve binding affinity matrix in diffbind
diffbind dba.count chip-seq written 13 months ago by hamaor • 0 • updated 12 months ago by Rory Stark • 600
3
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0
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1.9k
views
0
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DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
R diffbind chip-seq written 12 months ago by msimmer92 • 250
1
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0
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438
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0
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extract some feature from peak?
bedtools featurecount diffbind macs2 chip-seq written 13 months ago by star • 230
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1
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543
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1
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R's DiffBind. Error in pv.DBAplotVolcano(DBA, contrast = contrast, method = method,: object 'sigSites' not found
R diffbind chip-seq written 13 months ago by msimmer92 • 250 • updated 13 months ago by Friederike ♦ 5.4k
0
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697
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0
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Different options tryed with DiffBind and did not know what final result believe
R diffbind deseq2 chip-seq edger written 15 months ago by iraia.munoa • 90
0
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0
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317
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0
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Taking scores from DiffBind for other analysis?
diffbind chip-seq written 16 months ago by Roman Hillje • 40
1
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1
answer
607
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1
answer
Wrong coordinates of peaks in DiffBind
atacseq diffbind written 18 months ago by grant.hovhannisyan • 1.9k
6
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4
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1.4k
views
5 follow
4
answers
obtaining unique peaks in DiffBind
diffbind chip-seq differential written 20 months ago by Illinu • 90
2
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1
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969
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1
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DiffBind - normalization methods with biologically-relevant differences in signal-to-noise
normalization diffbind atac chip-seq signal written 22 months ago by reskejak • 20 • updated 21 months ago by Devon Ryan ♦ 94k
8
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1
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2.0k
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1
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Diffbind for ATAC-seq data with no controls
diffbind atac-seq written 22 months ago by daniele.avancini • 30 • updated 22 months ago by Rory Stark • 600
7
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1
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1.6k
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5 follow
1
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Diffbind - Very high proportion of significant peaks
diffbind deseq2 atac-seq written 24 months ago by kautilya • 410
4
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1
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1.7k
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5 follow
1
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Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into differential binding analysis
csaw diffbind differential binding chip-seq written 2.1 years ago by sikhtechai • 30 • updated 2.0 years ago by nicolas.descostes • 140
1
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1
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1.1k
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1
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DiffBind - Erroneous Affinity Shift In One Direction
diffbind chip-seq written 2.2 years ago by halner.andreas • 0 • updated 2.2 years ago by Rory Stark • 600
0
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818
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0
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DiffBind update warnings and running errors
diffbind dba.count atac-seq written 2.4 years ago by zhaolin20042008 • 10 • updated 2.4 years ago by Devon Ryan ♦ 94k
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