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DiffBind package showing warnings and unable to analyse my data
diffbind chip-seq written 1 day ago by chaudharyc61 • 0
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59
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diffbind dba.plotvolcano bLabels option use genames instead of numbers
volcano diffbind written 21 days ago by theodore • 40
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153
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How to properly organize a DiffBind analysis to normalize data across conditions (ChIP-seq)
R diffbind chip-seq written 7 weeks ago by msimmer92 • 200 • updated 7 weeks ago by ATpoint ♦ 19k
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97
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Diffbind affinity based analysis
diffbind chip-seq affinity analysis written 8 weeks ago by rapmic • 0 • updated 8 weeks ago by Rory Stark • 510
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Convert DiffBind output to standard BED or NarrowPeak format
bed diffbind chip-seq narrowpeak written 22 months ago by rbronste • 240 • updated 12 weeks ago by corinne_hutfilz • 0
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how to retrieve binding affinity matrix in diffbind
diffbind dba.count chip-seq written 4 months ago by hamaor • 0 • updated 3 months ago by Rory Stark • 510
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470
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DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
R diffbind chip-seq written 4 months ago by msimmer92 • 200
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extract some feature from peak?
bedtools featurecount diffbind macs2 chip-seq written 4 months ago by star • 170
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R's DiffBind. Error in pv.DBAplotVolcano(DBA, contrast = contrast, method = method,: object 'sigSites' not found
R diffbind chip-seq written 4 months ago by msimmer92 • 200 • updated 4 months ago by Friederike ♦ 4.5k
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Error while annotating with Chipseeker
chip-seq diffbind chipseeker annotation written 4 months ago by hamaor • 0
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389
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Different options tryed with DiffBind and did not know what final result believe
R diffbind deseq2 chip-seq edger written 7 months ago by iraia.munoa • 70
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203
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Taking scores from DiffBind for other analysis?
diffbind chip-seq written 7 months ago by Roman Hillje • 30
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372
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Wrong coordinates of peaks in DiffBind
atacseq diffbind written 10 months ago by grant.hovhannisyan • 1.6k
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obtaining unique peaks in DiffBind
diffbind chip-seq differential written 12 months ago by Illinu • 90
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615
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DiffBind - normalization methods with biologically-relevant differences in signal-to-noise
normalization diffbind atac chip-seq signal written 13 months ago by reskejak • 10 • updated 13 months ago by Devon Ryan ♦ 91k
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Diffbind for ATAC-seq data with no controls
diffbind atac-seq written 14 months ago by daniele.avancini • 20 • updated 14 months ago by Rory Stark • 510
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5 follow
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Diffbind - Very high proportion of significant peaks
diffbind deseq2 atac-seq written 15 months ago by kautilya • 390
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 16 months ago by erwan.scaon • 690 • updated 15 months ago by Rory Stark • 510
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5 follow
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Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into differential binding analysis
csaw diffbind differential binding chip-seq written 16 months ago by sikhtechai • 30 • updated 16 months ago by nicolas.descostes • 130
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DiffBind - Erroneous Affinity Shift In One Direction
diffbind chip-seq written 18 months ago by halner.andreas • 0 • updated 17 months ago by Rory Stark • 510
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DiffBind update warnings and running errors
diffbind dba.count atac-seq written 20 months ago by zhaolin20042008 • 0 • updated 20 months ago by Devon Ryan ♦ 91k
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Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
R diffbind deseq2 chip-seq edger written 21 months ago by daniele.avancini • 20
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7 follow
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[How to Save plots in R] DiffBind
R diffbind chip-seq written 21 months ago by chiefcat • 100 • updated 21 months ago by Rory Stark • 510
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Compromise null hypothesis when calling differential binding between ChIP-seq conditions
csaw diffbind chip-seq written 2.9 years ago by James Ashmore • 2.6k • updated 22 months ago by Biostar ♦♦ 20
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5 follow
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deeptools PCA vs ChIPQC PCA
deeptools diffbind chipqc chipseq written 23 months ago by ZheFrench • 240 • updated 23 months ago by Devon Ryan ♦ 91k
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DiffBind: Counting reads in overlapping regions
R diffbind chip-seq written 23 months ago by Roman Hillje • 30
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How do I use Diffbind as a complete beginner?
diffbind chip-seq written 2.2 years ago by AA • 0 • updated 2.2 years ago by igor ♦ 7.9k
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DiffBind overlap peaksets of two analyses / re-analyze subset of peaks
peak calling diffbind chip-seq written 2.5 years ago by Bontus • 80
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Peak Calling with MACS, Analysis with DiffBind, Danio Rerio!
diffbind atac-seq written 2.8 years ago by kyle.s.shank • 0
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DiffBind installation error in R & Rstudio?
diffbind written 2.8 years ago by gskbioinfo143 • 50 • updated 2.8 years ago by Sinji • 2.8k
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