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90,393 results • Page
1 of 1808
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0
votes
1
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42
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Convert GFF3 to splice junction BED file, for filtering variants multi-sample (RNA-seq) VCF
rna
splice-junction
vcf
37 minutes ago by
William
★ 4.8k
0
votes
0
replies
9
views
How to find single copy family from InParanoid output
InParanoid
single
copy
54 minutes ago by
gengyang12138
▴ 10
0
votes
0
replies
17
views
How to obtain FDR across all regions investigated in DiffBind
DiffBind
1 hour ago by
g.persic1991
• 0
0
votes
0
replies
14
views
GATK 4 and Spark multithreading
multithreading
haplotypecaller
sparks
gatk
1 hour ago by
Victoria
• 0
0
votes
0
replies
11
views
No peaks found in Signac's FindMarker
seurat
atac-seq
Signac
atac
singlecell
1 hour ago by
ahmad mousavi
▴ 520
0
votes
2
replies
41
views
Concatenating fasta files based on prefix ?
aligment
RNA
DNA
fasta
1 hour ago by
sunnykevin97
▴ 320
580
votes
155
replies
64k
views
89 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
handbook
tutorial
training
News
updated 3 days ago by
Biostar
10 • written 4.4 years ago by
Istvan Albert
87k
15
votes
10
replies
412
views
How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
transcript
rna-seq
updated 2 hours ago by
tamerg
▴ 90 • written 3 days ago by
Quanyou
• 0
0
votes
1
reply
44
views
Database/list of disease complications
complications
database
disease
updated 2 hours ago by
GenoMax
99k • written 4 hours ago by
Nur
• 0
0
votes
1
reply
199
views
Is it possible to annotate a file for the human genome using the command line without using an amino acid sequence
Annotation
human
DNA
PROVEAN
updated 2 hours ago by
GenoMax
99k • written 3 hours ago by
kamanovae
• 0
0
votes
1
reply
25
views
Forum:
What is your experience with the customer support of Oxford University Press?
oup
updated 53 minutes ago by
dariober
12k • written 2 hours ago by
jiri.hon
▴ 20
1
vote
0
replies
30
views
braker2 output: gff file is missing and species folder is empty
prothint
braker2
genome
braker
annotation
updated 1 hour ago by
zx8754
10k • written 2 hours ago by
praasu
▴ 40
0
votes
2
replies
51
views
Does GISAID fasta files contain spike protein or whole genome sequence?
sequence
protein
spike
genome
updated 1 hour ago by
WouterDeCoster
45k • written 3 hours ago by
er.alruba2017
• 0
0
votes
0
replies
18
views
question when using topgo
terms
go
incomplete
3 hours ago by
cyli
• 0
1
vote
0
replies
32
views
Job:
ELIXIR Training Coordinator (pan-European bioinformatics training)
lifescience
training
bioinformatics
4 hours ago by
Erin_Ensembl
▴ 420
0
votes
1
reply
38
views
Why GC content is important on NIPT results?
NGS
NIPT
Sequencing
updated 4 hours ago by
German.M.Demidov
★ 2.0k • written 5 hours ago by
khanhlpbao
• 0
0
votes
3
replies
121
views
Variant calling from comparison of assembled genomes where there is only one read depth.
variant
5 hours ago by
Hans
▴ 120
0
votes
1
reply
47
views
Finding all instances of a recurring motif in a repeat protein
repeat
markov
alignment
motifs
updated 5 hours ago by
Mensur Dlakic
★ 10k • written 6 hours ago by
NeuralCode
• 0
0
votes
0
replies
27
views
rpy hgu133a.db loading error
hgu133a.db
python
rpy
5 hours ago by
dxodnd
• 0
1
vote
4
replies
348
views
Help with CNV calling using ExomeDepth
exomedepth
R
CNV
gCNV
exome
updated 6 hours ago by
Joakim
▴ 10 • written 4 months ago by
luffy
• 0
2
votes
1
reply
99
views
How to grep scaffold from the vcf file
introns
VCF
scaffolds
updated 6 hours ago by
Pierre Lindenbaum
135k • written 10 hours ago by
Manoj
▴ 100
2
votes
1
reply
4.3k
views
Forum:
Biostar Forum Posting Guidelines
Forum
written 9.0 years ago by
Istvan Albert
87k
0
votes
1
reply
106
views
For loop - mkdir and command
for
loop
mkdir
updated 7 hours ago by
shenwei356
5.8k • written 8 hours ago by
jellila
• 0
0
votes
1
reply
35
views
News:
Noncoding RNA Conference: upcoming abstract deadline
ncRNA
conference
RNA
noncoding
written 21 hours ago by
rory.johnson
▴ 20
0
votes
5
replies
149
views
why my volcano plot looks strange?
wilcox.test
RNAseq
Metabolomics
LCMS
updated 56 minutes ago by
ATpoint
47k • written 8 hours ago by
hellocita
▴ 30
0
votes
2
replies
131
views
How to interpret multiqc report
QC
multiqc
rna-seq
11 hours ago by
townsendae
• 0
3
votes
1
reply
660
views
Can you suggest any journal without any publication fee for publishing microbiology and bioinformatics papers?
publications
journals
microbiology
bioinformatics
updated 12 hours ago by
Mensur Dlakic
★ 10k • written 12 hours ago by
saiki
▴ 10
1
vote
1
reply
68
views
How to get all microRNA target genes?
miRNA
multimir
microRNA
targetgenes
tarbase
updated 13 hours ago by
i.sudbery
11k • written 23 hours ago by
Katarina
▴ 10
0
votes
0
replies
40
views
When to use majority rule (0.5) and strict (1.0) consensus tree search?
maximum-likelihood
phylogenetics
prottest
13 hours ago by
ddh8602
• 0
1
vote
3
replies
169
views
vcftools intersect vs bedtools intersect
bedtools
vcf
vcftools
updated 7 hours ago by
Alex Reynolds
32k • written 1 day ago by
gpen
• 0
1
vote
4
replies
107
views
How to extract sequences from fasta that have a certain length ?
minlength
fasta
updated 11 hours ago by
shenwei356
5.8k • written 14 hours ago by
v.berriosfarias
▴ 10
2
votes
5
replies
122
views
Plotting Differential Induced Genes across timepoints in DESEQ2
Bioconductor
DESEQ2
MA
RNA-seq
updated 11 hours ago by
swbarnes2
9.7k • written 16 hours ago by
raisamathenge
▴ 10
1
vote
0
replies
34
views
Up-to-date GWAS Power Calculator and GWAS power comparison
GWAS
power
15 hours ago by
moxu
▴ 480
0
votes
0
replies
44
views
Tool:
FileSlide.io - Annotating and distributing sequencing data from the web
data-distribution
data-annotation
data-sharing
16 hours ago by
Simon
• 0
0
votes
5
replies
1.6k
views
How to highlight DE genes in plotMD ?
edgeR
plotMD
volcanoplot
mirnaseq
updated 16 hours ago by
raulgcova97
• 0 • written 3.0 years ago by
Björn
▴ 50
8
votes
6
replies
151
views
6 follow
Forum:
What to put in my Github
Github
updated 2 hours ago by
GenoMax
99k • written 17 hours ago by
g_virdzek
▴ 20
0
votes
0
replies
24
views
What criteria follow in order to choose the crystaline structure of a molecule
Molecular
Docking
17 hours ago by
roybatty269
• 0
2
votes
2
replies
549
views
Recombination maps for cattle
SNP
IMPUTE2
genome
Assembly
updated 17 hours ago by
Azwan
• 0 • written 18 months ago by
mdyogolos
▴ 10
2
votes
2
replies
62
views
Samtools view filter by reference sequence
samtools
5 hours ago by
maxrwjones898
• 0
0
votes
0
replies
34
views
How exactly does diffBind count reads?
atacseq
diffbind
18 hours ago by
iamjli
▴ 10
1
vote
8
replies
297
views
Pacbio SRA data format error
Pacbio
SRA
bax2bam
isoseq3
updated 18 hours ago by
GenoMax
99k • written 6 weeks ago by
shounak.chakraborty1990
• 0
0
votes
0
replies
38
views
The effect of heterozygosity on genome alignment
heterozigosity
alignment
bwa
sequence
19 hours ago by
Iseez
• 0
0
votes
2
replies
67
views
Segmentation fault (core dumped) error in MUSCLE
NGS
alignment
fastq
linux
sequence
18 hours ago by
christopherjamessteel1990
• 0
0
votes
1
reply
47
views
Genome sequencing data analysis and assembly L.lactis subsp.lactis strain Lac3
well
updated 20 hours ago by
Mensur Dlakic
★ 10k • written 22 hours ago by
ipb727258
• 0
2
votes
1
reply
72
views
Is it bad practice to change threshold for interaction probability?
STRING
Cytoscape
updated 20 hours ago by
Carlo Yague
5.8k • written 1 day ago by
gemmalouisebaldock
▴ 20
2
votes
3
replies
73
views
bedops wig2bed 'Row begins with a tab or space' error
wig2bed
bedops
convert2bed
4 hours ago by
a_bis
• 0
0
votes
2
replies
62
views
correlation analysis of a single variable versus multiple variables
correlation
r
RNA-Seq
2 hours ago by
pinheirofabiano
• 0
0
votes
0
replies
30
views
Demultiplexing Samples With Contaminated Hashtag
scRNAseq
seurat
demultiplexing
21 hours ago by
fouerghi20
▴ 30
1
vote
0
replies
33
views
Holistic enzyme activity determination with computation
protein
enzymes
bioinformatics
proteomics
22 hours ago by
birbronald9
▴ 10
0
votes
5
replies
113
views
transcription factor activation order
transcription
updated 16 hours ago by
ATpoint
47k • written 23 hours ago by
kenny
• 0
90,393 results • Page
1 of 1808
Recent Votes
A: Recommended cutoff for FDR - 0.05 or 0.1
A: Recommended cutoff for FDR - 0.05 or 0.1
Up-to-date GWAS Power Calculator and GWAS power comparison
braker2 output: gff file is missing and species folder is empty
Can you suggest any journal without any publication fee for publishing microbiology and bioinformatics papers?
Answer: Can you suggest any journal without any publication fee for publishing microbiol
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
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Recent Replies
Comment: How to implement k fold cv after randomForest
by
pt.taklifi
▴ 60
Thank you very much , I appreciate this complete response and guidance.
Comment: Bioinformatics startup market analysis
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juanjo75es
▴ 90
That information should be made public from public genomics facilities. Apart from a rampant double moral from people who otherwise critici…
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grant.hovhannisyan
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I guess it could be more effective if you ask/partner with a local genomics facility. People can be reluctant here to share this info
Answer: Convert GFF3 to splice junction BED file, for filtering variants multi-sample (
by
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Found what I needed in an R pacakge and in another Biostars question/answer. https://www.biostars.org/p/89341/ https://www.bioconduc…
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Then your analysis is basically meaningless, FDR is not optional, it always needs to be applied to avoid a large amount of false-positives.…
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hellocita
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The smallest p value is 0.02, so I did not correct it
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I had all the files in one directory. I already tried in bash it concatenates all the *.fa into one. I'm not so familiar with regular expre…
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45k
> the multiple fasta files of SARS-COV-2 I downloaded If you can't be more specific here, how do you expect us to be able to answer your q…
Comment: Concatenating fasta files based on prefix ?
by
5heikki
9.6k
There's no way that `cat *OG0012884. > OG0012884_out.fa` produced anything but an empty file If `OG0012884` represents a group ID and all …
Answer: How to convert Transcripts ID of rhesus monkey to Transcripts ID of homo sapiens
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My gene of interest has been implicated in opposing functions. In some types of cancer, it is claimed to be protective, in others it seems …
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See: https://www.biostars.org/p/492845/
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