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<prev • 44 results • page 1 of 2 • next >
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How to make a read count matrix from multiple bed files generated by ROSE
rose chipseq diffbind h3k27ac super-enhancers written 13 days ago by Researcher • 50
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3
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159
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6 follow
3
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DiffBind to call differential binding of Super-enhancers from ROSE
rose chipseq diffbind super-enhancers written 21 days ago by Researcher • 50 • updated 20 days ago by sim.j.baum • 50
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2
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129
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2
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DiffBind without replicates
R diffbind chip-seq written 27 days ago by zhangdengwei • 40
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1
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155
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1
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Which method is the best for using in "dba.count" in Diffbind R package
diffbind chip-seq written 6 weeks ago by sikhtechai • 30 • updated 6 weeks ago by Rory Stark • 550
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117
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ChIP-seq differential binding analysis tools
csaw diffbind chip-seq written 6 weeks ago by Jingyue • 30
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1
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300
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1
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 10 weeks ago by Researcher • 50 • updated 8 weeks ago by Rory Stark • 550
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221
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 9 weeks ago by Researcher • 50
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1
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641
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 20 months ago by erwan.scaon • 720 • updated 3 months ago by kieran.short • 0
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1
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216
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1
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DiffBind package showing warnings and unable to analyse my data
diffbind chip-seq written 4 months ago by chaudharyc61 • 10 • updated 4 months ago by Rory Stark • 550
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112
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diffbind dba.plotvolcano bLabels option use genames instead of numbers
volcano diffbind written 4 months ago by theodore • 50
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294
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1
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How to properly organize a DiffBind analysis to normalize data across conditions (ChIP-seq)
R diffbind chip-seq written 5 months ago by msimmer92 • 210 • updated 5 months ago by ATpoint ♦ 26k
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166
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1
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Diffbind affinity based analysis
diffbind chip-seq affinity analysis written 6 months ago by rapmic • 0 • updated 6 months ago by Rory Stark • 550
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Convert DiffBind output to standard BED or NarrowPeak format
bed diffbind chip-seq narrowpeak written 2.1 years ago by rbronste • 290 • updated 7 months ago by corinne_hutfilz • 0
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447
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2
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how to retrieve binding affinity matrix in diffbind
diffbind dba.count chip-seq written 8 months ago by hamaor • 0 • updated 7 months ago by Rory Stark • 550
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DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
R diffbind chip-seq written 8 months ago by msimmer92 • 210
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286
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extract some feature from peak?
bedtools featurecount diffbind macs2 chip-seq written 8 months ago by star • 190
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434
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R's DiffBind. Error in pv.DBAplotVolcano(DBA, contrast = contrast, method = method,: object 'sigSites' not found
R diffbind chip-seq written 8 months ago by msimmer92 • 210 • updated 8 months ago by Friederike ♦ 5.2k
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643
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Error while annotating with Chipseeker
chip-seq diffbind chipseeker annotation written 8 months ago by hamaor • 0
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558
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Different options tryed with DiffBind and did not know what final result believe
R diffbind deseq2 chip-seq edger written 11 months ago by iraia.munoa • 70
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262
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Taking scores from DiffBind for other analysis?
diffbind chip-seq written 11 months ago by Roman Hillje • 40
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471
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1
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Wrong coordinates of peaks in DiffBind
atacseq diffbind written 14 months ago by grant.hovhannisyan • 1.8k
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4
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1.2k
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5 follow
4
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obtaining unique peaks in DiffBind
diffbind chip-seq differential written 16 months ago by Illinu • 90
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1
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775
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1
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DiffBind - normalization methods with biologically-relevant differences in signal-to-noise
normalization diffbind atac chip-seq signal written 17 months ago by reskejak • 20 • updated 17 months ago by Devon Ryan ♦ 92k
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1
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1.5k
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1
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Diffbind for ATAC-seq data with no controls
diffbind atac-seq written 18 months ago by daniele.avancini • 20 • updated 18 months ago by Rory Stark • 550
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5 follow
1
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Diffbind - Very high proportion of significant peaks
diffbind deseq2 atac-seq written 19 months ago by kautilya • 400
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1
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5 follow
1
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Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into differential binding analysis
csaw diffbind differential binding chip-seq written 20 months ago by sikhtechai • 30 • updated 20 months ago by nicolas.descostes • 140
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DiffBind - Erroneous Affinity Shift In One Direction
diffbind chip-seq written 22 months ago by halner.andreas • 0 • updated 22 months ago by Rory Stark • 550
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DiffBind update warnings and running errors
diffbind dba.count atac-seq written 24 months ago by zhaolin20042008 • 0 • updated 24 months ago by Devon Ryan ♦ 92k
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1
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Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
R diffbind deseq2 chip-seq edger written 2.1 years ago by daniele.avancini • 20
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1.2k
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8 follow
1
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[How to Save plots in R] DiffBind
R diffbind chip-seq written 2.1 years ago by chiefcat • 130 • updated 2.1 years ago by Rory Stark • 550
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