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<prev • 53 results • page 1 of 2 • next >
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Combining the original replicates and pseudo-replicates for differential binding analysis?
replicates R diffbind chip-seq written 3 days ago by maisarasora • 10
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1
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76
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1
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diffBind dba.count error for a peaks file selected
diffbind chip-seq written 24 days ago by iridha • 0 • updated 23 days ago by Rory Stark • 730
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2
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97
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2
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Extract RPKM values from Diffbind
rpkm diffbind chip-seq written 28 days ago by francesca3 • 20 • updated 27 days ago by Rory Stark • 730
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1
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68
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1
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why DiffBind, diffferentially binding site is the for different samples
diffbind alignment chip-seq written 28 days ago by iridha • 0 • updated 28 days ago by Rory Stark • 730
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1
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168
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1
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How to make complex contrasts in DiffBind dba.contrast
R diffbind tool dba.contrast written 7 weeks ago by Bioinformatist Newbie • 250 • updated 28 days ago by Rory Stark • 730
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2
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250
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2
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Difference of DiffBind library size normalisation vs DESeq2 library size normalisation
diffbind deseq2 chip-seq rna-seq normalisation written 3 months ago by bioinfouser • 70 • updated 3 months ago by Rory Stark • 730
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205
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1
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Diffbind- results different every time I run it
software error diffbind written 4 months ago by francesca3 • 20 • updated 3 months ago by Michael Dondrup ♦ 47k
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1
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205
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1
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Obtained too many chip-seq peaks after diffbind, how to set a criteria to select more "significant" genes?
diffbind chip-seq written 3 months ago by yepeh72919 • 10 • updated 3 months ago by Rory Stark • 730
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Error while annotating with Chipseeker
chip-seq diffbind chipseeker annotation written 17 months ago by hamaor • 0 • updated 6 months ago by michal.okoniewski • 0
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176
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Changing the color of significantly up- or downregulated peaks in volcano plot from Diffbind
volcano diffbind volcano plot written 6 months ago by collmerr • 40
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172
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0
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How to make a read count matrix from multiple bed files generated by ROSE
rose chipseq diffbind h3k27ac super-enhancers written 9 months ago by Researcher • 50
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3
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469
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6 follow
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DiffBind to call differential binding of Super-enhancers from ROSE
rose chipseq diffbind super-enhancers written 9 months ago by Researcher • 50 • updated 9 months ago by sim.j.baum • 50
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2
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730
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2
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DiffBind without replicates
R diffbind chip-seq written 9 months ago by zhangdengwei • 70
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618
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Which method is the best for using in "dba.count" in Diffbind R package
diffbind chip-seq written 10 months ago by bioinfouser • 70 • updated 10 months ago by Rory Stark • 730
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242
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ChIP-seq differential binding analysis tools
csaw diffbind chip-seq written 10 months ago by Jingyue • 30
3
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1
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764
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1
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Are MACS2's summit or DiffBind's summit options are recommended for histone marks like H3K4me3, H3K27me3, H3K27ac and H3K4me1?
diffbind macs2 chip-seq summit histone written 11 months ago by Researcher • 50 • updated 10 months ago by Rory Stark • 730
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371
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Exploring H3K27me3 loss in cancer
h3k27me3 diffbind macs2 chip-seq histone written 11 months ago by Researcher • 50
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1
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820
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 2.4 years ago by erwan.scaon • 800 • updated 12 months ago by kieran.short • 0
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1
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583
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DiffBind package showing warnings and unable to analyse my data
diffbind chip-seq written 12 months ago by chaudharyc61 • 30 • updated 12 months ago by Rory Stark • 730
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188
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diffbind dba.plotvolcano bLabels option use genames instead of numbers
volcano diffbind written 13 months ago by theodore • 60
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644
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1
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How to properly organize a DiffBind analysis to normalize data across conditions (ChIP-seq)
R diffbind chip-seq written 14 months ago by msimmer92 • 250 • updated 14 months ago by ATpoint ♦ 36k
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253
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1
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Diffbind affinity based analysis
diffbind chip-seq affinity analysis written 14 months ago by rapmic • 0 • updated 14 months ago by Rory Stark • 730
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2
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1.5k
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2
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Convert DiffBind output to standard BED or NarrowPeak format
bed diffbind chip-seq narrowpeak written 2.9 years ago by rbronste • 360 • updated 15 months ago by corinne_hutfilz • 0
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2
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969
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how to retrieve binding affinity matrix in diffbind
diffbind dba.count chip-seq written 17 months ago by hamaor • 0 • updated 16 months ago by Rory Stark • 730
3
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DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
R diffbind chip-seq written 16 months ago by msimmer92 • 250
1
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498
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extract some feature from peak?
bedtools featurecount diffbind macs2 chip-seq written 17 months ago by star • 240
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668
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1
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R's DiffBind. Error in pv.DBAplotVolcano(DBA, contrast = contrast, method = method,: object 'sigSites' not found
R diffbind chip-seq written 17 months ago by msimmer92 • 250 • updated 17 months ago by Friederike ♦ 5.9k
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908
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Different options tryed with DiffBind and did not know what final result believe
R diffbind deseq2 chip-seq edger written 20 months ago by iraia.munoa • 100
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376
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Taking scores from DiffBind for other analysis?
diffbind chip-seq written 20 months ago by Roman Hillje • 40
1
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1
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732
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1
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Wrong coordinates of peaks in DiffBind
atacseq diffbind written 22 months ago by grant.hovhannisyan • 2.0k
<prev • 53 results • page 1 of 2 • next >
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