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<prev • 33 results • page 1 of 2 • next >
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DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
R diffbind chip-seq written 6 days ago by msimmer92 • 150
1
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97
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extract some feature from peak?
bedtools featurecount diffbind macs2 chip-seq written 18 days ago by star • 130
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1
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91
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1
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how to retrieve binding affinity matrix in diffbind
diffbind dba.count chip-seq written 29 days ago by hamaor • 0 • updated 21 days ago by iamjli • 10
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1
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76
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1
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R's DiffBind. Error in pv.DBAplotVolcano(DBA, contrast = contrast, method = method,: object 'sigSites' not found
R diffbind chip-seq written 24 days ago by msimmer92 • 150 • updated 23 days ago by Friederike ♦ 3.3k
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131
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Error while annotating with Chipseeker
chip-seq diffbind chipseeker annotation written 27 days ago by hamaor • 0
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245
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Different options tryed with DiffBind and did not know what final result believe
R diffbind deseq2 chip-seq edger written 3 months ago by iraia.munoa • 60
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126
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Taking scores from DiffBind for other analysis?
diffbind chip-seq written 3 months ago by Roman Hillje • 30
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251
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1
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Wrong coordinates of peaks in DiffBind
atacseq diffbind written 6 months ago by grant.hovhannisyan • 1.4k
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4
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684
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5 follow
4
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obtaining unique peaks in DiffBind
diffbind chip-seq differential written 8 months ago by Illinu • 90
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1
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481
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1
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DiffBind - normalization methods with biologically-relevant differences in signal-to-noise
normalization diffbind atac chip-seq signal written 9 months ago by reskejak • 10 • updated 9 months ago by Devon Ryan ♦ 88k
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1
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821
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1
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Diffbind for ATAC-seq data with no controls
diffbind atac-seq written 10 months ago by daniele.avancini • 10 • updated 10 months ago by Rory Stark • 500
6
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1
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850
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5 follow
1
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Diffbind - Very high proportion of significant peaks
diffbind deseq2 atac-seq written 11 months ago by kautilya • 380
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1
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451
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1
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 12 months ago by erwan.scaon • 640 • updated 11 months ago by Rory Stark • 500
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1
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902
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5 follow
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Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into differential binding analysis
csaw diffbind differential binding chip-seq written 12 months ago by sikhtechai • 30 • updated 12 months ago by nicolas.descostes • 130
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640
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DiffBind - Erroneous Affinity Shift In One Direction
diffbind chip-seq written 14 months ago by halner.andreas • 0 • updated 14 months ago by Rory Stark • 500
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528
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DiffBind update warnings and running errors
diffbind dba.count atac-seq written 16 months ago by zhaolin20042008 • 0 • updated 16 months ago by Devon Ryan ♦ 88k
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1
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1.5k
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1
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Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
R diffbind deseq2 chip-seq edger written 17 months ago by daniele.avancini • 10
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1
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866
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7 follow
1
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[How to Save plots in R] DiffBind
R diffbind chip-seq written 17 months ago by chiefcat • 90 • updated 17 months ago by Rory Stark • 500
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1
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722
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1
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Convert DiffBind output to standard BED or NarrowPeak format
bed diffbind chip-seq narrowpeak written 18 months ago by rbronste • 230 • updated 18 months ago by Rory Stark • 500
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1.0k
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Compromise null hypothesis when calling differential binding between ChIP-seq conditions
csaw diffbind chip-seq written 2.6 years ago by James Ashmore • 2.6k • updated 18 months ago by Biostar ♦♦ 20
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995
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5 follow
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deeptools PCA vs ChIPQC PCA
deeptools diffbind chipqc chipseq written 19 months ago by ZheFrench • 210 • updated 19 months ago by Devon Ryan ♦ 88k
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589
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DiffBind: Counting reads in overlapping regions
R diffbind chip-seq written 19 months ago by Roman Hillje • 30
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1
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1.9k
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1
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How do I use Diffbind as a complete beginner?
diffbind chip-seq written 22 months ago by AA • 0 • updated 22 months ago by igor ♦ 7.4k
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935
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DiffBind overlap peaksets of two analyses / re-analyze subset of peaks
peak calling diffbind chip-seq written 2.1 years ago by Bontus • 80
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Peak Calling with MACS, Analysis with DiffBind, Danio Rerio!
diffbind atac-seq written 2.5 years ago by kyle.s.shank • 0
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DiffBind installation error in R & Rstudio?
diffbind written 2.5 years ago by gskbioinfo143 • 50 • updated 2.5 years ago by Sinji • 2.8k
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2
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1.4k
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2
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Differential binding analysis of motif-containing peaks
fimo diffbind chip-seq written 3.1 years ago by ApoorvaB • 190
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1.7k
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1
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Issues with DiffBind
diffbind chip-seq written 3.6 years ago by V • 100 • updated 3.6 years ago by Pascal • 250
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2.5k
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2
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Differential binding analysis
diffbind chip-seq chip-on-chip written 4.5 years ago by marina-orlova • 70 • updated 3.9 years ago by vivekbhr • 510
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looking for plant ChIP-Seq data sets to try DiffBind (need replicates)
R diffbind chip-seq rna-seq written 4.4 years ago by Ann • 2.2k
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