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DiffBind - normalization methods with biologically-relevant differences in signal-to-noise
normalization diffbind atac chip-seq signal written 3 days ago by reskejak • 0 • updated 3 days ago by Devon Ryan ♦ 80k
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109
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Diffbind for ATAC-seq data with no controls
diffbind atac-seq written 27 days ago by daniele.avancini • 10 • updated 27 days ago by Rory Stark • 460
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5 follow
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Diffbind - Very high proportion of significant peaks
diffbind deseq2 atac-seq written 10 weeks ago by kautilya • 360
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Diffbind error : sequences from an unspecified genome; no seqlengths
macs diffbind macs2 chip-seq granges written 3 months ago by erwan.scaon • 540 • updated 10 weeks ago by Rory Stark • 460
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5 follow
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Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into differential binding analysis
csaw diffbind differential binding chip-seq written 3 months ago by sikhtechai • 30 • updated 3 months ago by nicolas.descostes • 110
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DiffBind - Erroneous Affinity Shift In One Direction
diffbind chip-seq written 4 months ago by halner.andreas • 0 • updated 4 months ago by Rory Stark • 460
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DiffBind update warnings and running errors
diffbind dba.count atac-seq written 6 months ago by zhaolin20042008 • 0 • updated 6 months ago by Devon Ryan ♦ 80k
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Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
R diffbind deseq2 chip-seq edger written 8 months ago by daniele.avancini • 10
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7 follow
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[How to Save plots in R] DiffBind
R diffbind chip-seq written 8 months ago by chiefcat • 70 • updated 8 months ago by Rory Stark • 460
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Convert DiffBind output to standard BED or NarrowPeak format
bed diffbind chip-seq narrowpeak written 8 months ago by rbronste • 160 • updated 8 months ago by Rory Stark • 460
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Compromise null hypothesis when calling differential binding between ChIP-seq conditions
csaw diffbind chip-seq written 22 months ago by James Ashmore • 2.4k • updated 9 months ago by Biostar ♦♦ 20
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5 follow
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deeptools PCA vs ChIPQC PCA
deeptools diffbind chipqc chipseq written 9 months ago by ZheFrench • 130 • updated 9 months ago by Devon Ryan ♦ 80k
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DiffBind: Counting reads in overlapping regions
R diffbind chip-seq written 10 months ago by Roman Hillje • 30
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How do I use Diffbind as a complete beginner?
diffbind chip-seq written 13 months ago by AA • 0 • updated 13 months ago by igor ♦ 6.2k
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DiffBind overlap peaksets of two analyses / re-analyze subset of peaks
peak calling diffbind chip-seq written 16 months ago by Bontus • 80
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Peak Calling with MACS, Analysis with DiffBind, Danio Rerio!
diffbind atac-seq written 21 months ago by kyle.s.shank • 0
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DiffBind installation error in R & Rstudio?
diffbind written 21 months ago by gskbioinfo143 • 50 • updated 21 months ago by Sinji • 2.6k
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Differential binding analysis of motif-containing peaks
fimo diffbind chip-seq written 2.4 years ago by AB • 90
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Issues with DiffBind
diffbind chip-seq written 2.9 years ago by V • 60 • updated 2.9 years ago by Pascal • 250
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Differential binding analysis
diffbind chip-seq chip-on-chip written 3.7 years ago by marina-orlova • 60 • updated 3.2 years ago by vivekbhr • 500
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looking for plant ChIP-Seq data sets to try DiffBind (need replicates)
R diffbind chip-seq rna-seq written 3.7 years ago by Ann • 2.2k
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Diffbind bioconductor, peaks overlapping
bioconductor chip-seq diffbind written 3.8 years ago by marina-orlova • 60
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Normalization factors from DiffBind for browser shots
diffbind chip-seq written 4.0 years ago by mkareta • 0 • updated 4.0 years ago by dariober ♦ 9.2k
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DiffBind - DESeq2 Consensus peakset
diffbind chip-seq written 4.1 years ago by aditi.qamra • 230 • updated 4.1 years ago by Ian ♦ 5.2k
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