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Differential Expression Help
rna-seq differential expression edger written 16 days ago by mlai2567 • 0 • updated 14 days ago by Biostar ♦♦ 20
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Experimental design RNAseq differential expression
rna-seq edger limma differential expression batch written 4 weeks ago by Pietro • 50 • updated 22 days ago by Biostar ♦♦ 20
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Model selection for differential expression
methylation limma rna-seq differential expression written 27 days ago by rmf • 570
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How does deseq2 encode more than 2 levels
deseq2 rna-seq differential expression written 22 months ago by -_- • 790 • updated 27 days ago by Biostar ♦♦ 20
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How to convert log2FC (Fold Change) obtained by differential expression analysis by DESeq2 to FC
deseq2 log2fc differential expression written 6 weeks ago by sole.r.v • 0 • updated 6 weeks ago by ZheFrench • 210
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DESEq2 Factor/Level Design
rnas differential expression written 9 weeks ago by sdbaney • 0 • updated 9 weeks ago by blawney • 10
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natural log used in Seurat for differential expression
rna-seq seurat differential expression written 11 weeks ago by nix • 0 • updated 11 weeks ago by Santosh Anand ♦ 4.7k
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RNAseq differential expression analysis : learning design matrix
rna-seq differential expression written 11 weeks ago by guillaume.rbt • 540 • updated 11 weeks ago by i.sudbery ♦ 4.3k
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Differential Expression of lncRNAs in Brain --- Can a database aid my search?
database differential expression lncrna written 12 weeks ago by JourneyToAbyss • 60 • updated 12 weeks ago by piyushjo • 110
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Can I perform de novo analysis on RNA seq file of Mus musculus?
de novo rna-seq differential expression written 3 months ago by rprog008 • 30
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Critique my Pipeline
rna-seq differential expression written 3 months ago by sdbaney • 0
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Same Values In Limma/Microarray Differential Expression
microarray limma output differential expression written 3 months ago by Wan Fahmi • 0 • updated 3 months ago by RamRS ♦ 21k
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Complicated Multi-factor Differential Expression
rnaseq multifactor sleuth differential expression written 3 months ago by gradstudentNew • 10 • updated 3 months ago by Charles Warden ♦ 6.6k
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Differential expression analysis on miRNA count files
mirseq differential expression written 5 months ago by nazaninhoseinkhan • 360 • updated 3 months ago by ahmad mousavi • 410
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sorting columns by same values to do DEG analysis
sorting columns differential expression written 4 months ago by dllopezr • 40 • updated 4 months ago by Fabio Marroni • 2.1k
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Statistical comparison of expression of two _different_ genes
rna-seq differential expression statistics written 4 months ago by kristoffer.vittingseerup • 1.7k
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Time-series Differential Expression Analysis
time-series rna-seq differential expression written 4 months ago by indrik.wijaya • 0 • updated 4 months ago by kristoffer.vittingseerup • 1.7k
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Looking for help and comments for my preprint paper
preprint paper differential expression rna-seq written 5 months ago by statfa • 430 • updated 5 months ago by WouterDeCoster ♦ 38k
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Mapping both PE reads and Single-end reads into transcriptome
trinity strand-specific differential expression written 6 months ago by pbigbig • 190
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Gene expression distribution (non-DE and DE)
rna-seq differential expression written 6 months ago by CY • 310 • updated 6 months ago by Kevin Blighe ♦ 41k
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Galaxy differential expression starting from raw FASTQ files
galaxy rna-seq differential expression written 6 months ago by english.server • 140 • updated 6 months ago by genomax ♦ 65k
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Advice on running a differential expression analysis on patients with slightly different mutations within each group
deseq2 rna-seq differential expression edger written 6 months ago by unawaz • 40
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Does FDR value change based Fold change cutoff?
R differential expression rna-seq edger statistics written 10 months ago by Biologist • 150 • updated 7 months ago by RamRS ♦ 21k
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Problem with low count removal in edgeR ?
edger differential expression mirna written 7 months ago by Björn • 40
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 9 months ago by stefanos.bamopoulos • 30 • updated 7 months ago by Biostar ♦♦ 20
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Analysis with no Differentially Expressed Genes?
microarray rna-seq differential expression written 11 months ago by vitor.saldanha11 • 10 • updated 7 months ago by Biostar ♦♦ 20
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Using Trinity for RNA-Seq analysis in model organisms
trinity rna-seq differential expression written 8 months ago by fred.s.kremer • 70 • updated 8 months ago by h.mon ♦ 24k
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Pathway test for reversal of effect (three-condition comparison)
camera differential expression gsea rna-seq written 8 months ago by glocke01 • 160 • updated 8 months ago by assaron • 170
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Assigning Fold Change for Polyester
rna-seq differential expression fold change written 9 months ago by priyankamaripuri • 40 • updated 9 months ago by h.mon ♦ 24k
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Mapping reads against a de novo assembly -- no genome available
mapping differential expression written 10 months ago by Lucila • 20
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