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<prev • 194 results • page 1 of 7 • next >
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Wilcoxon test, t-test and negative binomial test for DEG of scRNA-Seq data
scrna-seq deg differential expression written 5 days ago by CY • 550
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Mann-Whitney U-Test over an ExpressionSet yielding different results than original paper
R transcriptomics differential expression written 9 days ago by Pia • 10 • updated 9 days ago by h.mon ♦ 31k
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Comparing two differential expression experiments
deseq differential expression written 3.7 years ago by user31888 • 90 • updated 28 days ago by Biostar ♦♦ 20
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What model is used by Ballgown?
ballgown rna-seq differential expression written 4 weeks ago by peter.brockport • 0
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5 follow
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EdgeR for single cell differential expression analysis
single-cell edger differential expression written 11 months ago by kvshamsudheen • 40 • updated 5 weeks ago by ATpoint ♦ 40k
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Reference sequence for miRNA-Seq differential expression analysis
mirna-seq mirdeep2 differential expression written 5 weeks ago by fawazfebin • 100 • updated 5 weeks ago by RamRS ♦ 30k
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Read counts from DCC or CIRI2 for differential expression with DESeq2?
differential expression rna-seq dcc circ2 circrna written 6 weeks ago by microbiotaiota • 20
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TCGA: is it possible to use normal samples from another cancer data set in differential expression analysis?
tcga normal sample differential expression rna-seq written 6 weeks ago by nova_25 • 0
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ClusterProfiler dotplot method does not include all input groups.
R clusterprofiler differential expression dotplot written 11 weeks ago by markm014 • 0
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DE analysis with limma (What to include in the model?)
de analysis limma differential expression written 11 weeks ago by grayapply2009 • 220
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Pathway RNAseq analysis
rna-seq differential expression written 3 months ago by Cristian.perez • 50
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Small Sample Size (2 vs 3) in RNA-Seq DGE Shows Statistically Significant Result
sample size rna-seq differential expression written 3 months ago by andreasmichaelsh • 0 • updated 3 months ago by i.sudbery ♦ 9.4k
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Subset Function in Ballgown
differential expression transcriptome written 11 months ago by mss • 30 • updated 3 months ago by zhhxu9 • 10
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Meaning of columns in TSV Kallisto mapped file
tpm kallisto differential expression written 4 months ago by Antonio R. Franco • 4.5k
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Removing Unknown Batch Effects and Latent Confounders in Splicing PSI Data
sva differential expression splicing rna-seq limma written 5 months ago by eggerj • 0 • updated 5 months ago by geek_y ♦ 11k
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"Enhanced Volcano" package - how to set p adjusted cut off?
R differential expression written 5 months ago by tanya_fiskur • 40 • updated 5 months ago by Kevin Blighe ♦ 66k
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Limma: how can I maintain molecule names in the matrix?
R limma differential expression written 5 months ago by rbravos87 • 0 • updated 5 months ago by Kevin Blighe ♦ 66k
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lncRNA differential expression analysis
rna-seq differential expression lncrna written 6 months ago by seta • 1.4k • updated 6 months ago by Kevin Blighe ♦ 66k
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Scale() function, is it always necessary?
gene scaling differential expression written 6 months ago by innyus • 20
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how to label one gene only inside my volcano plot? or to show the gene names but in a good way?
gene R volcano_plot differential expression written 6 months ago by Raia262 • 0 • updated 6 months ago by geek_y ♦ 11k
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Normalization and differential analysis in ATAC-seq data
peak calling atac-seq differential expression written 2.5 years ago by anais1396 • 30 • updated 7 months ago by ATpoint ♦ 40k
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'NA's under Gene Names & Gene Symbols : Differential expression Analysis of TCGA data using edgeR
gene tcga differential expression edger written 8 months ago by fawazfebin • 100
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Modeling the NB distribution for differential expression
differential expression rna-seq written 3.5 years ago by rachelrodgers12 • 0 • updated 8 months ago by Biostar ♦♦ 20
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miRNA differential expression analysis, no significant adjusted p-values
R limma differential expression mirna written 4.2 years ago by Alexander Skates • 360 • updated 9 months ago by husainbioinfos • 0
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Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
sc-rnaseq differential expression written 10 months ago by jrleary • 130 • updated 10 months ago by igor ♦ 11k
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RNAseq differential expression analysis : no significative FDR but significative GO enrichment
rna-seq differential expression written 12 months ago by guillaume.rbt • 830
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Differential Expression Analysis of Two Groups Time Series Data with Limma
microarray limma rna-seq differential expression written 12 months ago by hkarakurt • 100
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Processing GEO data and calculating differential expression using limma
geo R beadarray limma differential expression written 13 months ago by APJ • 30
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Making a contrast matrix with multiple co-variates for differential expression analysis
R limma linear model differential expression written 13 months ago by dodausp • 140
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Can I perform differential gene expression with samples from Poly-A and Ribo-deplation ?
rna-seq differential expression written 14 months ago by dganiewich • 120
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