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Error massage when instantiating DEseq Dataset
R differential expression sizefactors deseq written 13 days ago by anthonyimhez • 0 • updated 13 days ago by ATpoint ♦ 44k
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Barplot in R for differential expression analysis
R rna-seq differential expression graph written 24 days ago by lenC_biotecLover • 20 • updated 24 days ago by Hamid Ghaedi • 1.2k
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Unusual distribution of LogFC in EdgeR (Single cell)
edger differential expression rna-seq written 26 days ago by kvshamsudheen • 60
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181
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5 follow
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RNA-seq expression patterns
pattern analysis rna-seq differential expression written 7 weeks ago by mickey_95 • 30
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multiple samples differential expression analysis
fastq kallisto differential expression written 9 weeks ago by julie_dddd • 10 • updated 9 weeks ago by swbarnes2 ♦ 9.3k
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EdgeR exactTest help
R rna-seq differential expression edger written 10 weeks ago by jmor • 10 • updated 10 weeks ago by Gordon Smyth • 2.1k
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Wilcoxon test, t-test and negative binomial test for DEG of scRNA-Seq data
scrna-seq deg differential expression written 3 months ago by CY • 550
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Mann-Whitney U-Test over an ExpressionSet yielding different results than original paper
R transcriptomics differential expression written 3 months ago by Pia • 10 • updated 3 months ago by h.mon ♦ 32k
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Comparing two differential expression experiments
deseq differential expression written 3.9 years ago by user31888 • 100 • updated 3 months ago by Biostar ♦♦ 20
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What model is used by Ballgown?
ballgown rna-seq differential expression written 3 months ago by peter.brockport • 0
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EdgeR for single cell differential expression analysis
single-cell edger differential expression written 14 months ago by kvshamsudheen • 60 • updated 4 months ago by ATpoint ♦ 44k
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Reference sequence for miRNA-Seq differential expression analysis
mirna-seq mirdeep2 differential expression written 4 months ago by fawazfebin • 100 • updated 4 months ago by _r_am ♦ 32k
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Read counts from DCC or CIRI2 for differential expression with DESeq2?
differential expression rna-seq dcc circ2 circrna written 4 months ago by microbiotaiota • 20
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TCGA: is it possible to use normal samples from another cancer data set in differential expression analysis?
tcga normal sample differential expression rna-seq written 4 months ago by nova_25 • 0
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ClusterProfiler dotplot method does not include all input groups.
R clusterprofiler differential expression dotplot written 5 months ago by markm014 • 0
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DE analysis with limma (What to include in the model?)
de analysis limma differential expression written 5 months ago by grayapply2009 • 240
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Pathway RNAseq analysis
rna-seq differential expression written 5 months ago by Cristian.perez • 50
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Small Sample Size (2 vs 3) in RNA-Seq DGE Shows Statistically Significant Result
sample size rna-seq differential expression written 5 months ago by andreasmichaelsh • 0 • updated 5 months ago by i.sudbery ♦ 10k
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Subset Function in Ballgown
differential expression transcriptome written 14 months ago by mss • 40 • updated 6 months ago by zhhxu9 • 10
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Meaning of columns in TSV Kallisto mapped file
tpm kallisto differential expression written 7 months ago by Antonio R. Franco • 4.5k
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Removing Unknown Batch Effects and Latent Confounders in Splicing PSI Data
sva differential expression splicing rna-seq limma written 8 months ago by eggerj • 10 • updated 8 months ago by geek_y ♦ 11k
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"Enhanced Volcano" package - how to set p adjusted cut off?
R differential expression written 8 months ago by tanya_fiskur • 40 • updated 8 months ago by Kevin Blighe ♦ 69k
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Limma: how can I maintain molecule names in the matrix?
R limma differential expression written 8 months ago by rbravos87 • 0 • updated 8 months ago by Kevin Blighe ♦ 69k
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lncRNA differential expression analysis
rna-seq differential expression lncrna written 8 months ago by seta • 1.4k • updated 8 months ago by Kevin Blighe ♦ 69k
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6 follow
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Scale() function, is it always necessary?
gene scaling differential expression written 9 months ago by innyus • 20
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how to label one gene only inside my volcano plot? or to show the gene names but in a good way?
gene R volcano_plot differential expression written 9 months ago by Raia262 • 0 • updated 9 months ago by geek_y ♦ 11k
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Normalization and differential analysis in ATAC-seq data
peak calling atac-seq differential expression written 2.8 years ago by anais1396 • 30 • updated 10 months ago by ATpoint ♦ 44k
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'NA's under Gene Names & Gene Symbols : Differential expression Analysis of TCGA data using edgeR
gene tcga differential expression edger written 11 months ago by fawazfebin • 100
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Modeling the NB distribution for differential expression
differential expression rna-seq written 3.7 years ago by rachelrodgers12 • 0 • updated 11 months ago by Biostar ♦♦ 20
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miRNA differential expression analysis, no significant adjusted p-values
R limma differential expression mirna written 4.4 years ago by Alexander Skates • 360 • updated 12 months ago by husainbioinfos • 0
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