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7
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5 follow
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Can I perform differential gene expression with samples from Poly-A and Ribo-deplation ?
rna-seq differential expression written 15 days ago by dganiewich • 80
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RNAseq differential expression analysis with only a set of genes
differential expression gene set written 13 days ago by demoraesdiogo2017 • 10 • updated 13 days ago by ATpoint ♦ 21k
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2
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139
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featureCount Too Many Genes
featurecount differential expression written 22 days ago by gtasource • 20 • updated 22 days ago by WouterDeCoster ♦ 40k
7
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1
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148
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1
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Way to do differential gene expression analysis without writing Rscripts?
rna-seq differential expression written 23 days ago by jpcchoy • 0 • updated 22 days ago by Charles Warden ♦ 7.2k
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Best Methods for Measuring the similarity of two pairwise Gene Expression contrasts
microarray rna-seq differential expression written 28 days ago by adam.faranda • 10
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Replicate in the design formula
design rna-seq differential expression written 29 days ago by indrik.wijaya • 0
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109
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RNA-seq differential expression : relevance of mixing several datasets
rna-seq differential expression written 5 weeks ago by guillaume.rbt • 620 • updated 5 weeks ago by leaodel • 80
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Setting Up Model in DeSeq2
deseq2 rna-seq differential expression htseqcount written 6 weeks ago by lkw222 • 30 • updated 5 weeks ago by genomax ♦ 70k
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RNA-seq differential expression analysis with high number of samples
rna-seq differential expression written 6 weeks ago by guillaume.rbt • 620 • updated 6 weeks ago by Charles Warden ♦ 7.2k
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Finding annotation package for two color agilent array data sets
gene agilent microarray differential expression written 8 weeks ago by anjanas • 0
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5 follow
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DE analysis of genes with different number of samples in Tumor and control group
tcga tcga biolinks limma differential expression written 3 months ago by hAjmal • 30 • updated 8 weeks ago by Biostar ♦♦ 20
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DESeq2 compare all levels using wald and lrt test
R deseq2 differential expression written 8 weeks ago by aiswaryabioinfo • 20 • updated 8 weeks ago by Devon Ryan ♦ 91k
3
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1
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Relevance of RNAseq meta-analysis
rna-seq differential expression written 9 weeks ago by guillaume.rbt • 620 • updated 9 weeks ago by Asaf ♦ 6.1k
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Finding a biomarker from DE genes
mirna biomarker differential expression rna-seq written 3 months ago by Rituriya • 20 • updated 3 months ago by Buffo • 1.6k
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positive and negative Fold Change glmLRT test
log2fc glmlrt rna-seq differential expression written 3 months ago by debitboro • 110
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Differential Expression Help
rna-seq differential expression edger written 4 months ago by mlai2567 • 0 • updated 4 months ago by Biostar ♦♦ 20
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Experimental design RNAseq differential expression
rna-seq edger limma differential expression batch written 5 months ago by Pietro • 90 • updated 4 months ago by Biostar ♦♦ 20
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Model selection for differential expression
methylation limma rna-seq differential expression written 4 months ago by rmf • 700
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How does deseq2 encode more than 2 levels
deseq2 rna-seq differential expression written 2.2 years ago by -_- • 830 • updated 4 months ago by Biostar ♦♦ 20
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How to convert log2FC (Fold Change) obtained by differential expression analysis by DESeq2 to FC
deseq2 log2fc differential expression written 5 months ago by sole.r.v • 0 • updated 5 months ago by ZheFrench • 250
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DESEq2 Factor/Level Design
rnas differential expression written 6 months ago by sdbaney • 0 • updated 6 months ago by blawney • 10
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natural log used in Seurat for differential expression
rna-seq seurat differential expression written 6 months ago by nix • 0 • updated 6 months ago by Santosh Anand ♦ 4.9k
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9 follow
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RNAseq differential expression analysis : learning design matrix
rna-seq differential expression written 6 months ago by guillaume.rbt • 620 • updated 6 months ago by i.sudbery ♦ 5.2k
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Differential Expression of lncRNAs in Brain --- Can a database aid my search?
database differential expression lncrna written 6 months ago by JourneyToAbyss • 80 • updated 6 months ago by piyushjo • 150
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Can I perform de novo analysis on RNA seq file of Mus musculus?
de novo rna-seq differential expression written 7 months ago by rprog008 • 30
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Critique my Pipeline
rna-seq differential expression written 7 months ago by sdbaney • 0
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266
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Same Values In Limma/Microarray Differential Expression
microarray limma output differential expression written 7 months ago by Wan Fahmi • 0 • updated 7 months ago by RamRS ♦ 23k
0
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1
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264
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1
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Complicated Multi-factor Differential Expression
rnaseq multifactor sleuth differential expression written 7 months ago by gradstudentNew • 20 • updated 7 months ago by Charles Warden ♦ 7.2k
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8 follow
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Differential expression analysis on miRNA count files
mirseq differential expression written 9 months ago by nazaninhoseinkhan • 360 • updated 7 months ago by ahmad mousavi • 450
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sorting columns by same values to do DEG analysis
sorting columns differential expression written 8 months ago by dllopezr • 40 • updated 8 months ago by Fabio Marroni • 2.3k
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