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4
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EdgeR for single cell differential expression analysis
single-cell edger differential expression written 3 days ago by kvshamsudheen • 30
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66
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Subset Function in Ballgown
differential expression transcriptome written 10 days ago by msobol • 20 • updated 9 days ago by Amar • 440
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251
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5 follow
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RNAseq differential expression analysis : no significative FDR but significative GO enrichment
rna-seq differential expression written 24 days ago by guillaume.rbt • 730
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115
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Differential Expression Analysis of Two Groups Time Series Data with Limma
microarray limma rna-seq differential expression written 4 weeks ago by hkarakurt • 80
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128
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Processing GEO data and calculating differential expression using limma
geo R beadarray limma differential expression written 8 weeks ago by APJ • 20
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Making a contrast matrix with multiple co-variates for differential expression analysis
R limma linear model differential expression written 9 weeks ago by dodausp • 120
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Can I perform differential gene expression with samples from Poly-A and Ribo-deplation ?
rna-seq differential expression written 3 months ago by dganiewich • 90
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150
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RNAseq differential expression analysis with only a set of genes
differential expression gene set written 3 months ago by demoraesdiogo2017 • 10 • updated 3 months ago by ATpoint ♦ 25k
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2
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228
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featureCount Too Many Genes
featurecount differential expression written 3 months ago by gtasource • 30 • updated 3 months ago by WouterDeCoster ♦ 42k
7
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210
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1
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Way to do differential gene expression analysis without writing Rscripts?
rna-seq differential expression written 3 months ago by jpcchoy • 0 • updated 3 months ago by Charles Warden ♦ 7.3k
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124
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Best Methods for Measuring the similarity of two pairwise Gene Expression contrasts
microarray rna-seq differential expression written 3 months ago by adam.faranda • 70
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125
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Replicate in the design formula
design rna-seq differential expression written 3 months ago by indrik.wijaya • 0
0
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1
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164
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1
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RNA-seq differential expression : relevance of mixing several datasets
rna-seq differential expression written 4 months ago by guillaume.rbt • 730 • updated 4 months ago by leaodel • 110
1
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279
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Setting Up Model in DeSeq2
deseq2 rna-seq differential expression htseqcount written 4 months ago by lkw222 • 30 • updated 4 months ago by genomax ♦ 74k
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RNA-seq differential expression analysis with high number of samples
rna-seq differential expression written 4 months ago by guillaume.rbt • 730 • updated 4 months ago by Charles Warden ♦ 7.3k
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Finding annotation package for two color agilent array data sets
gene agilent microarray differential expression written 4 months ago by anjanas • 0
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243
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5 follow
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DE analysis of genes with different number of samples in Tumor and control group
tcga tcga biolinks limma differential expression written 6 months ago by hAjmal • 30 • updated 4 months ago by Biostar ♦♦ 20
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334
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DESeq2 compare all levels using wald and lrt test
R deseq2 differential expression written 4 months ago by aiswaryabioinfo • 20 • updated 4 months ago by Devon Ryan ♦ 92k
3
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192
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Relevance of RNAseq meta-analysis
rna-seq differential expression written 4 months ago by guillaume.rbt • 730 • updated 4 months ago by Asaf ♦ 6.4k
0
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1
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222
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1
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Finding a biomarker from DE genes
mirna biomarker differential expression rna-seq written 6 months ago by Rituriya • 30 • updated 6 months ago by Buffo • 1.7k
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261
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positive and negative Fold Change glmLRT test
log2fc glmlrt rna-seq differential expression written 6 months ago by debitboro • 130
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Differential Expression Help
rna-seq differential expression edger written 7 months ago by mlai2567 • 0 • updated 7 months ago by Biostar ♦♦ 20
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Experimental design RNAseq differential expression
rna-seq edger limma differential expression batch written 7 months ago by Pietro • 90 • updated 7 months ago by Biostar ♦♦ 20
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247
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Model selection for differential expression
methylation limma rna-seq differential expression written 7 months ago by rmf • 750
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680
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How does deseq2 encode more than 2 levels
deseq2 rna-seq differential expression written 2.4 years ago by -_- • 840 • updated 7 months ago by Biostar ♦♦ 20
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726
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How to convert log2FC (Fold Change) obtained by differential expression analysis by DESeq2 to FC
deseq2 log2fc differential expression written 8 months ago by sole.r.v • 0 • updated 8 months ago by ZheFrench • 260
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3
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DESEq2 Factor/Level Design
rnas differential expression written 9 months ago by sdbaney • 0 • updated 9 months ago by blawney • 10
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natural log used in Seurat for differential expression
rna-seq seurat differential expression written 9 months ago by nix • 0 • updated 9 months ago by Santosh Anand ♦ 5.0k
10
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1
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307
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9 follow
1
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RNAseq differential expression analysis : learning design matrix
rna-seq differential expression written 9 months ago by guillaume.rbt • 730 • updated 9 months ago by i.sudbery ♦ 6.3k
1
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Differential Expression of lncRNAs in Brain --- Can a database aid my search?
database differential expression lncrna written 9 months ago by JourneyToAbyss • 80 • updated 9 months ago by piyushjo • 170
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