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<prev • 183 results • page 1 of 7 • next >
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Removing Unknown Batch Effects and Latent Confounders in Splicing PSI Data
sva differential expression splicing rna-seq limma written 12 days ago by eggerj • 0 • updated 12 days ago by geek_y ♦ 11k
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91
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"Enhanced Volcano" package - how to set p adjusted cut off?
R differential expression written 20 days ago by tanya_fiskur • 30 • updated 19 days ago by Kevin Blighe ♦ 60k
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99
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Limma: how can I maintain molecule names in the matrix?
R limma differential expression written 22 days ago by rbravos87 • 0 • updated 21 days ago by Kevin Blighe ♦ 60k
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lncRNA differential expression analysis
rna-seq differential expression lncrna written 5 weeks ago by seta • 1.3k • updated 5 weeks ago by Kevin Blighe ♦ 60k
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Scale() function, is it always necessary?
gene scaling differential expression written 6 weeks ago by innyus • 10
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how to label one gene only inside my volcano plot? or to show the gene names but in a good way?
gene R volcano_plot differential expression written 6 weeks ago by a.rahim2626 • 0 • updated 6 weeks ago by geek_y ♦ 11k
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Normalization and differential analysis in ATAC-seq data
peak calling atac-seq differential expression written 2.1 years ago by anais1396 • 20 • updated 11 weeks ago by ATpoint ♦ 35k
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'NA's under Gene Names & Gene Symbols : Differential expression Analysis of TCGA data using edgeR
gene tcga differential expression edger written 3 months ago by fawazfebin • 40
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Modeling the NB distribution for differential expression
differential expression rna-seq written 3.1 years ago by rachelrodgers12 • 0 • updated 3 months ago by Biostar ♦♦ 20
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miRNA differential expression analysis, no significant adjusted p-values
R limma differential expression mirna written 3.8 years ago by Alexander Skates • 360 • updated 4 months ago by husainbioinfos • 0
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Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
sc-rnaseq differential expression written 5 months ago by jrleary • 110 • updated 5 months ago by igor ♦ 10k
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EdgeR for single cell differential expression analysis
single-cell edger differential expression written 6 months ago by kvshamsudheen • 40
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Subset Function in Ballgown
differential expression transcriptome written 7 months ago by mss • 30 • updated 7 months ago by Amar • 650
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5 follow
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RNAseq differential expression analysis : no significative FDR but significative GO enrichment
rna-seq differential expression written 7 months ago by guillaume.rbt • 790
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Differential Expression Analysis of Two Groups Time Series Data with Limma
microarray limma rna-seq differential expression written 7 months ago by hkarakurt • 100
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Processing GEO data and calculating differential expression using limma
geo R beadarray limma differential expression written 8 months ago by APJ • 30
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Making a contrast matrix with multiple co-variates for differential expression analysis
R limma linear model differential expression written 8 months ago by dodausp • 140
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5 follow
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Can I perform differential gene expression with samples from Poly-A and Ribo-deplation ?
rna-seq differential expression written 10 months ago by dganiewich • 110
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RNAseq differential expression analysis with only a set of genes
differential expression gene set written 10 months ago by demoraesdiogo2017 • 10 • updated 10 months ago by ATpoint ♦ 35k
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424
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featureCount Too Many Genes
featurecount differential expression written 10 months ago by gtasource • 60 • updated 10 months ago by WouterDeCoster ♦ 43k
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Way to do differential gene expression analysis without writing Rscripts?
rna-seq differential expression written 10 months ago by jpcchoy • 0 • updated 10 months ago by Charles Warden ♦ 7.7k
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Best Methods for Measuring the similarity of two pairwise Gene Expression contrasts
microarray rna-seq differential expression written 10 months ago by adam.faranda • 80
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Replicate in the design formula
design rna-seq differential expression written 10 months ago by indrik.wijaya • 0
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RNA-seq differential expression : relevance of mixing several datasets
rna-seq differential expression written 10 months ago by guillaume.rbt • 790 • updated 10 months ago by leaodel • 130
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459
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Setting Up Model in DeSeq2
deseq2 rna-seq differential expression htseqcount written 10 months ago by lkw222 • 30 • updated 10 months ago by genomax ♦ 84k
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5 follow
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RNA-seq differential expression analysis with high number of samples
rna-seq differential expression written 11 months ago by guillaume.rbt • 790 • updated 11 months ago by Charles Warden ♦ 7.7k
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Finding annotation package for two color agilent array data sets
gene agilent microarray differential expression written 11 months ago by anjanas • 0
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5 follow
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DE analysis of genes with different number of samples in Tumor and control group
tcga tcga biolinks limma differential expression written 13 months ago by hAjmal • 40 • updated 11 months ago by Biostar ♦♦ 20
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DESeq2 compare all levels using wald and lrt test
R deseq2 differential expression written 11 months ago by aiswaryabioinfo • 20 • updated 11 months ago by Devon Ryan ♦ 95k
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Relevance of RNAseq meta-analysis
rna-seq differential expression written 11 months ago by guillaume.rbt • 790 • updated 11 months ago by Asaf ♦ 7.6k
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