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Can I perform de novo analysis on RNA seq file of Mus musculus?
de novo rna-seq differential expression written 8 hours ago by rprog008 • 0
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88
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Critique my Pipeline
rna-seq differential expression written 22 hours ago by sdbaney • 0
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Same Values In Limma/Microarray Differential Expression
microarray limma output differential expression written 4 days ago by Wan Fahmi • 0 • updated 4 days ago by RamRS ♦ 20k
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1
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113
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1
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Complicated Multi-factor Differential Expression
rnaseq multifactor sleuth differential expression written 27 days ago by gradstudentNew • 10 • updated 25 days ago by Charles Warden ♦ 5.9k
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8 follow
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Differential expression analysis on miRNA count files
mirseq differential expression written 10 weeks ago by nazaninhoseinkhan • 360 • updated 27 days ago by ahmad mousavi • 370
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124
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sorting columns by same values to do DEG analysis
sorting columns differential expression written 4 weeks ago by dllopezr • 40 • updated 4 weeks ago by Fabio Marroni • 2.0k
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89
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Statistical comparison of expression of two _different_ genes
rna-seq differential expression statistics written 7 weeks ago by kristoffer.vittingseerup • 1.3k
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218
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Time-series Differential Expression Analysis
time-series rna-seq differential expression written 7 weeks ago by indrik.wijaya • 0 • updated 7 weeks ago by kristoffer.vittingseerup • 1.3k
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306
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Looking for help and comments for my preprint paper
preprint paper differential expression rna-seq written 12 weeks ago by statfa • 410 • updated 12 weeks ago by WouterDeCoster ♦ 36k
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Mapping both PE reads and Single-end reads into transcriptome
trinity strand-specific differential expression written 3 months ago by pbigbig • 190
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1
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175
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1
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Gene expression distribution (non-DE and DE)
rna-seq differential expression written 3 months ago by CY • 270 • updated 3 months ago by Kevin Blighe ♦ 35k
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272
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1
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Galaxy differential expression starting from raw FASTQ files
galaxy rna-seq differential expression written 3 months ago by english.server • 120 • updated 3 months ago by genomax ♦ 60k
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1
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344
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1
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Advice on running a differential expression analysis on patients with slightly different mutations within each group
deseq2 rna-seq differential expression edger written 3 months ago by unawaz • 40
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Does FDR value change based Fold change cutoff?
R differential expression rna-seq edger statistics written 7 months ago by Biologist • 130 • updated 4 months ago by RamRS ♦ 20k
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Problem with low count removal in edgeR ?
edger differential expression mirna written 4 months ago by Björn • 40
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Combining lenient prefiltering with expression filtering of the results in a DE experiment
rna-seq limma filtering differential expression written 6 months ago by stefanos.bamopoulos • 30 • updated 4 months ago by Biostar ♦♦ 20
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666
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7 follow
1
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Analysis with no Differentially Expressed Genes?
microarray rna-seq differential expression written 8 months ago by vitor.saldanha11 • 0 • updated 4 months ago by Biostar ♦♦ 20
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212
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1
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Using Trinity for RNA-Seq analysis in model organisms
trinity rna-seq differential expression written 5 months ago by fred.s.kremer • 70 • updated 5 months ago by h.mon ♦ 22k
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207
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1
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Pathway test for reversal of effect (three-condition comparison)
camera differential expression gsea rna-seq written 5 months ago by glocke01 • 160 • updated 5 months ago by assaron • 170
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Assigning Fold Change for Polyester
rna-seq differential expression fold change written 6 months ago by priyankamaripuri • 40 • updated 6 months ago by h.mon ♦ 22k
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Mapping reads against a de novo assembly -- no genome available
mapping differential expression written 7 months ago by Lucila • 20
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7 follow
1
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edger model matrix design of linear model
design matrix edger differential expression written 7 months ago by teabonng • 10
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How to calculate chromosomal enrichment of differentially expressed genes
permutation rna-seq differential expression written 4.0 years ago by Sakti • 360 • updated 7 months ago by Biostar ♦♦ 20
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10 follow
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ATAC-seq DE analysis
atac-seq differential expression written 7 months ago by collmerr • 10 • updated 7 months ago by trausch • 1.2k
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Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 2.1 years ago by ccag • 30 • updated 7 months ago by phosphodiester_bond • 20
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478
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8 follow
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Plotting the expression of some genes across time points
R rna-seq differential expression written 7 months ago by jivarajivaraj • 40 • updated 7 months ago by Vijay Lakhujani ♦ 3.5k
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output TMM normalized counts with edgeR
differential expression rna-seq written 7 months ago by guillaume.rbt • 490 • updated 7 months ago by James Ashmore • 2.5k
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330
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Differential co-expression analysis on TCGA transcriptomic data
mirna-seq rna-seq differential expression written 7 months ago by nazaninhoseinkhan • 360
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5 follow
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Differential Expression of illumina microarray data
illumina microarray differential expression music written 22 months ago by bio94 • 40 • updated 8 months ago by Biostar ♦♦ 20
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Differential expression analysis with DEseq2 : multiple groups comparison
rna-seq differential expression written 8 months ago by guillaume.rbt • 490 • updated 8 months ago by Devon Ryan ♦ 87k
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