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Perform differential expression for illumina data
illumina limma differential expression written 12 days ago by Agaz Hussain Wani • 40
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What are the major differences in the computation of DE genes between deseq2 and limma?
R deseq2 limma differential expression rna-seq written 5 weeks ago by sbrown669 • 10 • updated 15 days ago by Kevin Blighe • 1.2k
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Too many significant genes?
bioconductor microarray differential expression written 4 weeks ago by ab123 • 0 • updated 4 weeks ago by mforde84 • 900
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Underdispersion issue in RNA-Seq data
rna-seq underdispersion differential expression written 20 months ago by Naim.Mahi • 0 • updated 5 weeks ago by Biostar ♦♦ 20
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How to account for cell type composition in differential expression analysis?
xcell differential expression cell type rna-seq written 10 weeks ago by a.e.c • 20
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How does deseq2 encode more than 2 levels
deseq2 rna-seq differential expression written 3 months ago by -_- • 470
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Why DESeq2 in parallel mode is slower than normal?!
parallel deseq rna-seq differential expression written 3 months ago by ilikebing2000 • 50 • updated 3 months ago by Michael Love • 1.4k
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How do I get statistics for the interaction effect in my RNA-Seq?
ballgown sleuth differential expression rna-seq written 3 months ago by kyusikkim • 0
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Control samples size is much lower than tumor samples in TCGA
tcga differential expression rna-seq written 4 months ago by Poorya Parvizi • 0
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Comparing Libraries With Different Read Lengths
rna-seq differential expression written 4 months ago by CF • 50 • updated 4 months ago by Devon Ryan ♦ 70k
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Modeling the NB distribution for differential expression
differential expression rna-seq written 4 months ago by rachelrodgers12 • 0
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Confusing edgeR result for reads without count
count matrix differential expression edger written 5 months ago by polag03 • 0
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SPIA results show FDR=1 for RNA-Seq differential expression data downloaded from TCGA
fdr spia tcga rna-seq differential expression written 5 months ago by asnanizami • 0 • updated 5 months ago by theobroma22 • 930
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How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
rna-seq differential expression edger written 5 months ago by gabriel.rosser • 90
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Differential Expression of illumina microarray data
illumina microarray differential expression music written 5 months ago by paul.elliot1994 • 0
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Differential expression using microarray data and limma, where am I going wrong?
limma differential expression microarray written 6 months ago by Tom • 10
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Please adivse me on differential expression analysis on the STAR/Stringtie output
count stringtie star differential expression edger written 7 months ago by seta • 920 • updated 6 months ago by dunhamcg • 0
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Accounting for hidden batch effects in differential expression analysis with DEXseq and Slueth
batch effects rna-seq differential expression written 6 months ago by vakul.mohanty • 230
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Joining RNASeq librairies from different experiments
normalization rna-seq differential expression written 20 months ago by Joel TM • 50 • updated 6 months ago by Biostar ♦♦ 20
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How do you find ballgown package for differential expression analysis?
ballgown differential expression written 7 months ago by seta • 920
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Comparing two differential expression experiments
deseq differential expression written 7 months ago by user31888 • 20
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RNA Sequencing Differential Expression with IDAT Files
idat rna-seq differential expression written 11 months ago by questionaire • 0 • updated 7 months ago by Biostar ♦♦ 20
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Using limma for Differential Expression test
limma differential expression written 9 months ago by v82masae • 30 • updated 7 months ago by Biostar ♦♦ 20
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Question: error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma differential expression written 8 months ago by cemcdono • 0
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Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 9 months ago by ccag • 20 • updated 8 months ago by Biostar ♦♦ 20
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Confusion regarding Trinity analyze_diff_expr.pl
trinity differential expression transcriptome written 9 months ago by pbigbig • 180 • updated 8 months ago by Farbod • 3.0k
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differential expression and meta analysis of microarray
meta analysis microarray differential expression written 9 months ago by Edalat • 10 • updated 8 months ago by newbiebio • 60
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Differential expression in metabolomics data
metabolomics R differential expression written 11 months ago by Srw • 10 • updated 9 months ago by Biostar ♦♦ 20
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DESeq2 proper design setting
deseq2 design differential expression rna-seq written 9 months ago by Macspider • 1.5k • updated 9 months ago by Carlo Yague • 3.2k
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how does cuffdiff treats replicates with high std?
cufflinks cuffdiff rna-seq differential expression written 9 months ago by galozs • 0
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