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Showing: differential gene expression • reset
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Easiest way to Get gene Id's from Affymetrix Probeset id's
R microarray differential gene expression written 5 months ago by tw617 • 30 • updated 5 months ago by Kevin Blighe ♦ 41k
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which package should be selected for differential gene expression analysis
rna-seq differential gene expression written 5 months ago by lkianmehr • 30 • updated 5 months ago by Charles Warden ♦ 6.6k
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how do Differential gene expression analysis by Salmon output
salmon differential gene expression written 6 months ago by lkianmehr • 30 • updated 6 months ago by genomax ♦ 65k
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Adjusting for confounding variables in RNA-SEQ Differential Expression Analysis
rna-seq differential gene expression statistics written 8 months ago by ucakhnd • 10 • updated 8 months ago by btsui • 290
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DESeq2 compare all levels
deseq2 rna-seq differential gene expression written 9 months ago by rmf • 560 • updated 9 months ago by Kevin Blighe ♦ 41k
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Circos plot heatmap
differential gene expression heatmap written 4.3 years ago by Peter.Wood • 0 • updated 10 months ago by Biostar ♦♦ 20
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5 follow
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Why different DEGs between my result and the author's result?
microarray differential gene expression limma written 13 months ago by fernardo • 120 • updated 13 months ago by dariober ♦ 10.0k
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RNASeq: Differential gene expression and qqplot
deseq2 rna-seq differential gene expression limma written 14 months ago by rmf • 560
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RNA-Seq DGE: Evaluate model quality
deseq2 rna-seq differential gene expression written 14 months ago by rmf • 560 • updated 14 months ago by Devon Ryan ♦ 89k
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Requesting help with RNA-Seq differential gene analysis
normalization deseq2 differential gene expression written 14 months ago by sagnik • 0 • updated 14 months ago by Kevin Blighe ♦ 41k
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RNA-Seq DGE using PCA components as covariate
deseq2 rna-seq differential gene expression glm written 14 months ago by rmf • 560 • updated 14 months ago by h.mon ♦ 24k
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Differential gene expression from RNAseq data. Before or after annotation?
rnaseq annotation differential gene expression written 14 months ago by pablo61991 • 70 • updated 14 months ago by Macspider • 2.8k
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RNAseq differential gene expression analysis yield results which come from digestive content
contamination differential gene expression rna-seq written 16 months ago by pablo61991 • 70
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DESeq2 for differential gene expression on GTEx dataset
deseq2 differential gene expression gtex rna-seq written 17 months ago by vikram • 0
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DGE on transcriptomic data, focus on transcript sequences or in derivated ORFs?
orfs rna-seq differential gene expression written 17 months ago by pablo61991 • 70 • updated 17 months ago by gilbert.bionet • 130
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DGE on protein-coding and lncRNAs separately?
rna-seq differential gene expression written 17 months ago by rmf • 560 • updated 17 months ago by Nicolas Rosewick ♦ 7.5k
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Differential Gene Expression Analysis using two distinct scRNA-seq datasets
scrna-seq differential gene expression rna-seq written 17 months ago by Eskimo • 90
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Many Differentially expressed genes but few GO terms
rna-seq differential gene expression gene-ontology written 17 months ago by rmf • 560
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Read count correlation between samples
differential gene expression rna-seq written 18 months ago by rmf • 560 • updated 18 months ago by Kevin Blighe ♦ 41k
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Picking differentially expressed genes using consensus
rna-seq differential gene expression written 21 months ago by rmf • 560
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betweenLaneNormalization and calcNormFactors in RUVs
R ruvs rna-seq differential gene expression written 22 months ago by manish20072013 • 0
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Isoforms or Duplications
duplications rna-seq differential gene expression written 2.1 years ago by sanathoi • 10
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How to identify significant differentially expressed genes and gene regulatory networks from microarray data.
microarray differential gene expression written 2.5 years ago by morteza.mahmoudisaber • 70
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EdgeR in Galaxy. Adjust C-value?
galaxy edger differential gene expression c-value written 2.6 years ago by ando.kelli • 40 • updated 2.6 years ago by Devon Ryan ♦ 89k
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design matrix for dge
R limma differential gene expression written 2.9 years ago by 1234anjalianjali1234 • 30
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DESeq2 inconsistent results
deseq2 rna-seq differential gene expression written 3.0 years ago by Chris Gene • 60 • updated 3.0 years ago by geek_y ♦ 9.4k
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Maximum Number of Gene in a DESeq2 and edgeR
deseq2 edger differential gene expression written 3.1 years ago by rieza.aprianto • 10 • updated 3.1 years ago by Carlo Yague • 4.4k
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different phenotypes using RNA-seq and microarray analysis
microarray differential gene expression rna-seq written 3.2 years ago by Nil Desperandum • 0 • updated 3.2 years ago by igor ♦ 7.6k
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Is there a limit to the p-value & q-value for cuffdiff gene_exp.diff?
cuffdiff rna-seq differential gene expression written 3.2 years ago by Yuka Takemon • 20
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Troubleshooting differential expression with limma
limma differential gene expression microarray written 3.4 years ago by deconti.d • 0
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