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8
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126
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Millions of Reads Needed for Differential Gene Expression
deseq2 rna-seq differential gene expression written 22 days ago by contact • 10 • updated 21 days ago by h.mon ♦ 27k
4
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1
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165
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1
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Heatmap with custom gene labels annotated on the rows
rnaseq bulk differential gene expression heatmap written 8 weeks ago by bioinforesearchquestions • 270
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162
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Duplicate row name not allowed while reading the file in R
R deseq2 rna-seq differential gene expression written 4 months ago by imanbh • 0
11
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415
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No significant DEG: A request to double check my commands for limma.
covariates limma differential gene expression written 5 months ago by RNAseqer • 110
1
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1
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268
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1
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Easiest way to Get gene Id's from Affymetrix Probeset id's
R microarray differential gene expression written 11 months ago by tw617 • 30 • updated 11 months ago by Kevin Blighe ♦ 50k
4
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390
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which package should be selected for differential gene expression analysis
rna-seq differential gene expression written 12 months ago by lkianmehr • 30 • updated 11 months ago by Charles Warden ♦ 7.3k
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how do Differential gene expression analysis by Salmon output
salmon differential gene expression written 12 months ago by lkianmehr • 30 • updated 12 months ago by genomax ♦ 73k
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1.3k
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Adjusting for confounding variables in RNA-SEQ Differential Expression Analysis
rna-seq differential gene expression statistics written 14 months ago by ucakhnd • 10 • updated 14 months ago by btsui • 290
8
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5 follow
1
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DESeq2 compare all levels
deseq2 rna-seq differential gene expression written 15 months ago by rmf • 730 • updated 15 months ago by Kevin Blighe ♦ 50k
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Circos plot heatmap
differential gene expression heatmap written 4.8 years ago by Peter.Wood • 0 • updated 16 months ago by Biostar ♦♦ 20
6
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3
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5 follow
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Why different DEGs between my result and the author's result?
microarray differential gene expression limma written 19 months ago by fernardo • 130 • updated 19 months ago by dariober ♦ 10k
3
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1
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1.3k
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RNASeq: Differential gene expression and qqplot
deseq2 rna-seq differential gene expression limma written 20 months ago by rmf • 730
4
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1
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670
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RNA-Seq DGE: Evaluate model quality
deseq2 rna-seq differential gene expression written 20 months ago by rmf • 730 • updated 20 months ago by Devon Ryan ♦ 92k
0
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850
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1
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Requesting help with RNA-Seq differential gene analysis
normalization deseq2 differential gene expression written 20 months ago by sagnik • 0 • updated 20 months ago by Kevin Blighe ♦ 50k
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7 follow
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RNA-Seq DGE using PCA components as covariate
deseq2 rna-seq differential gene expression glm written 20 months ago by rmf • 730 • updated 20 months ago by h.mon ♦ 27k
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Differential gene expression from RNAseq data. Before or after annotation?
rnaseq annotation differential gene expression written 20 months ago by pablo61991 • 70 • updated 20 months ago by Macspider • 3.0k
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481
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RNAseq differential gene expression analysis yield results which come from digestive content
contamination differential gene expression rna-seq written 22 months ago by pablo61991 • 70
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DESeq2 for differential gene expression on GTEx dataset
deseq2 differential gene expression gtex rna-seq written 23 months ago by vikram • 0
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DGE on transcriptomic data, focus on transcript sequences or in derivated ORFs?
orfs rna-seq differential gene expression written 23 months ago by pablo61991 • 70 • updated 23 months ago by gilbert.bionet • 130
1
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686
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DGE on protein-coding and lncRNAs separately?
rna-seq differential gene expression written 23 months ago by rmf • 730 • updated 23 months ago by Nicolas Rosewick ♦ 8.3k
0
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778
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Differential Gene Expression Analysis using two distinct scRNA-seq datasets
scrna-seq differential gene expression rna-seq written 23 months ago by Eskimo • 90
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5 follow
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Many Differentially expressed genes but few GO terms
rna-seq differential gene expression gene-ontology written 24 months ago by rmf • 730
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Read count correlation between samples
differential gene expression rna-seq written 24 months ago by rmf • 730 • updated 24 months ago by Kevin Blighe ♦ 50k
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681
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Picking differentially expressed genes using consensus
rna-seq differential gene expression written 2.2 years ago by rmf • 730
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betweenLaneNormalization and calcNormFactors in RUVs
R ruvs rna-seq differential gene expression written 2.3 years ago by manish20072013 • 0
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Isoforms or Duplications
duplications rna-seq differential gene expression written 2.6 years ago by sanathoi • 10
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How to identify significant differentially expressed genes and gene regulatory networks from microarray data.
microarray differential gene expression written 3.0 years ago by morteza.mahmoudisaber • 70
2
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1
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893
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EdgeR in Galaxy. Adjust C-value?
galaxy edger differential gene expression c-value written 3.1 years ago by ando.kelli • 40 • updated 3.1 years ago by Devon Ryan ♦ 92k
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1
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1.3k
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1
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design matrix for dge
R limma differential gene expression written 3.4 years ago by 1234anjalianjali1234 • 30
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DESeq2 inconsistent results
deseq2 rna-seq differential gene expression written 3.5 years ago by Chris Gene • 60 • updated 3.5 years ago by geek_y ♦ 9.9k
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