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90,505 results • Page 1 of 1811
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1
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3
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11
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Redundancy reduction of de novo transcriptome assemblies with Compacta?
de-novo transcriptome redundancy-reduction
updated 2 minutes ago by 99k • written 20 minutes ago by ▴ 620
0
votes
5
replies
49
views
Cellranger count.srun issues
cellranger srun
updated 27 minutes ago by 99k • written 2 hours ago by • 0
1
vote
1
reply
62
views
Up-to-date GWAS Power Calculator and GWAS power comparison
GWAS power
updated 2 hours ago by 72k • written 3 days ago by ▴ 480
0
votes
1
reply
1.6k
views
How to design WGCNA: one analysis over all sample or seperate analysis (using consensus module analysis)?
WGCNA RNA-seq
updated 2 hours ago by 72k • written 1 day ago by • 0
0
votes
0
replies
13
views
Program for predicting RNA sequences that may bind to a protein Domain
protein Binding domain RNA
2 hours ago by noahhelton98 ▴ 10
580
votes
155
replies
64k
views
89 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
handbook tutorial training News
updated 6 days ago by 10 • written 4.4 years ago by 87k
0
votes
1
reply
47
views
Contradiction in Harzard ratio and Log fold change
Foldchange Cancer HR HarzardRatio LogFC
updated 2 hours ago by 72k • written 1 day ago by • 0
0
votes
0
replies
23
views
Refs/tools for protein interactomes
Protein PSI-MI Interactome Orthologs PPI
37 minutes ago by ian.will • 0
0
votes
3
replies
68
views
How to plot a image like this.
plot Bioinformatics Cancer R Genome
updated 3 hours ago by • 0 • written 3 hours ago by • 0
0
votes
1
reply
49
views
HaplotypeCaller VCF depth is greater than the number of reads in bam
HaplotypeCaller vcf gatk
updated 3 hours ago by 135k • written 3 hours ago by • 0
0
votes
1
reply
36
views
How to get Data from https://www.orthodb.org/ by the list of UniprotID
Bioinformatics
updated 3 hours ago by 99k • written 11 hours ago by • 0
1
vote
4
replies
67
views
samtools idxstats unplaced contigs
contig STAR samtools
updated 4 hours ago by ★ 2.7k • written 5 hours ago by • 0
0
votes
2
replies
43
views
16S data classification using kraken and centrifuge
centrifuge 16S classification kraken
updated 3 hours ago by 15k • written 4 hours ago by • 0
0
votes
3
replies
70
views
Differential expression analysis with LIMMA results
DGE
5 hours ago by najioumayma ▴ 10
0
votes
0
replies
55
views
Job: Bioinformatician/Programmer at the University of Pennsylvania
pipelines programmer bioinformatician python r
5 hours ago by adamnaj • 0
0
votes
1
reply
38
views
Is there a way to include not conda package/programs to snakemake environment?
Non-Conda_packages Snakemake
updated 4 hours ago by 2.8k • written 5 hours ago by ▴ 20
1
vote
1
reply
45
views
How to download all the Zn-binding protein sequences from MetalPDB?
PDB NCBI protein python database
updated 5 hours ago by 99k • written 6 hours ago by ▴ 50
0
votes
0
replies
23
views
How to assemble short DNA sequences using ABYSS?
sequence multiple-alignment assembly
6 hours ago by anikcropscience ▴ 40
0
votes
0
replies
35
views
Job: Bioinformatician at Turbine / Hungary
proteomics cancerreserach singlecell python r
6 hours ago by timea.volenter • 0
0
votes
1
reply
40
views
How to run SPAdes assembler with bam files?
spades assembler bam
updated 6 hours ago by 99k • written 6 hours ago by ▴ 560
2
votes
1
reply
54
views
Filter contig fasta file by GC content
contig gc
updated 6 hours ago by 99k • written 7 hours ago by • 0
0
votes
0
replies
20
views
Why were all TCGA SVS slides redacted?
slides slide tcga svs digital
7 hours ago by ceruleanivy ▴ 30
0
votes
0
replies
23
views
DisGeNET plugin usage error
DisGeNET phenotype plugin vep
6 hours ago by enes • 0
0
votes
0
replies
18
views
negative BAF values OH
LOH cnvkit BAF
7 hours ago by John • 0
0
votes
2
replies
81
views
MASURCA output
masurca
8 hours ago by kilcdincer ▴ 10
0
votes
0
replies
37
views
Job: Research assistant in straining engineering at DTU Center of Biosustainability
engineering coli Biofoundry E. Strain
9 hours ago by info ▴ 60
0
votes
0
replies
31
views
Job: Research assistant for yeast natural products project at DTU Biosustain
yeast preps DNA DTU Biosustain CRISPR
9 hours ago by info ▴ 60
1
vote
8
replies
139
views
how to select peaks at not transcribed genes
bedtools transcribed peaks not_trasncribed
updated 5 hours ago by 48k • written 10 hours ago by ▴ 910
0
votes
0
replies
30
views
Job: Analytical chemist (RA) for yeast natural products project at DTU Biosustain
HPLC yeast biochemistry
10 hours ago by info ▴ 60
9
votes
8
replies
129
views
How to combine 2 incomplete GTF
Cufflinks Cuffcompare GTF Cuffmerge Merge
7 hours ago by rafaelsolersanblas ▴ 70
5
votes
3
replies
173
views
R command worked yesterday, but stalls today?
R
updated 5 hours ago by 32k • written 1 day ago by • 0
0
votes
4
replies
145
views
Snakemake with bwa_mem2_mem unable to open the ref file and doesn' t work
bwa-mem2 conda snakemake pipeline
9 hours ago by aka • 0
3
votes
3
replies
90
views
Extract chromosome 1 - 22 fasta file
fasta
updated 12 hours ago by 5.8k • written 13 hours ago by • 0
0
votes
1
reply
70
views
GATK GenomicsDBImport for consolidate GVCF
GATK GenomicsDBImport consolidate
updated 13 hours ago by 135k • written 13 hours ago by • 0
0
votes
1
reply
83
views
Question about methods monitoring the change from dsDNA/RNA to ssRNA/DNA
RNA DNA chaser Substrate
updated 12 hours ago by 48k • written 15 hours ago by • 0
0
votes
1
reply
86
views
SHAPEIT2 - ERROR "BAD RECOMBINATION RATE"
shapeit2 phasing
updated 12 hours ago by ▴ 400 • written 16 hours ago by ▴ 20
0
votes
0
replies
74
views
How to download pedigree (SNP's) from cattle
pedigree data snp inference haplotype
17 hours ago by S. Roa • 0
0
votes
0
replies
61
views
Job: Multiple data scientist positions in computational biomedicine
CompBiology Bioinformatics MachineLearning
17 hours ago by pandey.gaurav ▴ 130
4
votes
5
replies
148
views
GSEA for RNA_seq dataset
DEGs GSEA RNA_seq
updated 9 hours ago by 48k • written 1 day ago by • 0
0
votes
0
replies
33
views
OMA output document error
OMA output document error
18 hours ago by Yong • 0
4
votes
4
replies
112
views
Hunting invisible characters?
adaptor adapter grep
updated 20 hours ago by 7.6k • written 23 hours ago by ▴ 120
0
votes
0
replies
42
views
Alternative Refence Allele in PLINK2 data files
PLINK2 ALLELE
22 hours ago by carlstat123 • 0
2
votes
4
replies
161
views
How can I Extract Transposable element from a new genome assembly?
genome transposons assembly annotations
5 hours ago by jaqx008 ▴ 90
1
vote
1
reply
94
views
differential expression analysis
CRITERIA DEGS THRESOLD
updated 23 hours ago by ★ 10k • written 1 day ago by ▴ 10
21
votes
4
replies
2.3k
views
Tutorial: A simple tutorial for a complex ComplexHeatmap
complexheatmap clustering arthritis pam Tutorial
updated 19 hours ago by ▴ 40 • written 11 months ago by 72k
3
votes
2
replies
192
views
SNP's datasets and pedigreees
SNP data inference haplotype pedigrees base
1 day ago by S. Roa • 0
0
votes
3
replies
186
views
Arlequin problem (different loci number among different genotypes)
SNP
updated 1 day ago by 11k • written 26 days ago by • 0
4
votes
1
reply
2.8k
views
Tool: Clustering of short peptide sequences
peptide clustering phage display Tool
updated 1 day ago by • 0 • written 5.5 years ago by ▴ 390
2
votes
3
replies
100
views
X amino acid in ensembl
aminoacid alignment ensembl protein sequence
updated 23 hours ago by ★ 10k • written 1 day ago by • 0
0
votes
11
replies
366
views
File conversion from coordinates to genes
conversion
updated 1 day ago by 32k • written 17 days ago by • 0
90,505 results • Page 1 of 1811
Recent Votes
A: Extract Sub-Set Of Regions From Vcf File
Where Can I Download The Public Version Of The The Human Gene Mutation Database (Hgmd)
A: Store a scRNA-seq ~gene expression "matrix.txt" as a "matrix.mtx" in R
nr database Diamond
A: nr database Diamond
A: nr database Diamond
Answer: How to download all the Zn-binding protein sequences from MetalPDB?
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Recent Replies
Comment: Redundancy reduction of de novo transcriptome assemblies with Compacta? by Dunois ▴ 620
Hi @genomax , how are you? I'm looking at `Compacta` because I'd rather not use `CD-HIT` or `MMseqs2` if I can.
Comment: Redundancy reduction of de novo transcriptome assemblies with Compacta? by GenoMax 99k
Have you tried `CD-HIT` ([**LINK**][1]) for this application? [1]: http://weizhongli-lab.org/cd-hit/
Comment: Cellranger count.srun issues by GenoMax 99k
That does not make logical sense based on error which said command not found. If a prior script worked with same `PATH` but if this is gene…
Comment: Cellranger count.srun issues by gonzalezb549 • 0
cellranger is for sure installed. A sample script using the same commands just different fastq paths worked fine but for some reason this s…
Comment: Cellranger count.srun issues by gonzalezb549 • 0
The path used has worked on previous scripts but I tried what you said. It still resulted in the same error.
Comment: Which Fasta file and GTF file to use in STAR alignment by opplatek ▴ 110
You don't have to change the default `--sjdbOverhang` value unless you have very short reads (less than 50 bp; see [here][1]). If your read…
Comment: Cellranger count.srun issues by GenoMax 99k
> cellranger: command not found. Are you sure this `PATH` value is correct `/network/rit/misc/scratch/single_cell/cellranger/cellranger=3.…
Comment: Cellranger count.srun issues by swbarnes2 9.7k
Well, did you make sure cellranger was installed?
Answer: Up-to-date GWAS Power Calculator and GWAS power comparison by Kevin Blighe 72k
Hi, Please try CaTS: http://csg.sph.umich.edu/abecasis/cats/ Kevin
Answer: How to design WGCNA: one analysis over all sample or seperate analysis (using c by Kevin Blighe 72k
> Use all samples in one adjacency matrix to identify modules once. In this scenario, after you have identified the modules, you would cor…
Answer: Contradiction in Harzard ratio and Log fold change by Kevin Blighe 72k
Hi, There is no issue here, in my opinion. Consider the following 3 scenarios: - a tumour suppressor gene is deleted or heavily methyla…
Comment: How to plot a image like this. by galen.seilis • 0
I just noticed the colourbar above. For that it would be preferable to use slicing notation to assign those regions compared to looping and…
Comment: How to plot a image like this. by galen.seilis • 0
I hope someone directs you to a package that does what you want. If not, I have good news. This diagram is easy to make without a specializ…
Comment: 16S data classification using kraken and centrifuge by cpad0112 15k
and equivalent parameters in both the programs
Comment: How to plot a image like this. by GenoMax 99k
[GenVisR][1] is a possible option. [1]: https://bioconductor.org/packages/release/bioc/vignettes/GenVisR/inst/doc/Intro.html#1_GenVisR
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