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90,505 results • Page
1 of 1811
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Votes
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1
vote
3
replies
11
views
Redundancy reduction of de novo transcriptome assemblies with Compacta?
de-novo
transcriptome
redundancy-reduction
updated 2 minutes ago by
GenoMax
99k • written 20 minutes ago by
Dunois
▴ 620
0
votes
5
replies
49
views
Cellranger count.srun issues
cellranger
srun
updated 27 minutes ago by
GenoMax
99k • written 2 hours ago by
gonzalezb549
• 0
1
vote
1
reply
62
views
Up-to-date GWAS Power Calculator and GWAS power comparison
GWAS
power
updated 2 hours ago by
Kevin Blighe
72k • written 3 days ago by
moxu
▴ 480
0
votes
1
reply
1.6k
views
How to design WGCNA: one analysis over all sample or seperate analysis (using consensus module analysis)?
WGCNA
RNA-seq
updated 2 hours ago by
Kevin Blighe
72k • written 1 day ago by
leesooyeon94
• 0
0
votes
0
replies
13
views
Program for predicting RNA sequences that may bind to a protein Domain
protein
Binding
domain
RNA
2 hours ago by
noahhelton98
▴ 10
580
votes
155
replies
64k
views
89 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
handbook
tutorial
training
News
updated 6 days ago by
Biostar
10 • written 4.4 years ago by
Istvan Albert
87k
0
votes
1
reply
47
views
Contradiction in Harzard ratio and Log fold change
Foldchange
Cancer
HR
HarzardRatio
LogFC
updated 2 hours ago by
Kevin Blighe
72k • written 1 day ago by
Mran
• 0
0
votes
0
replies
23
views
Refs/tools for protein interactomes
Protein
PSI-MI
Interactome
Orthologs
PPI
37 minutes ago by
ian.will
• 0
0
votes
3
replies
68
views
How to plot a image like this.
plot
Bioinformatics
Cancer
R
Genome
updated 3 hours ago by
galen.seilis
• 0 • written 3 hours ago by
lincaijin1994
• 0
0
votes
1
reply
49
views
HaplotypeCaller VCF depth is greater than the number of reads in bam
HaplotypeCaller
vcf
gatk
updated 3 hours ago by
Pierre Lindenbaum
135k • written 3 hours ago by
wang.yiguan
• 0
0
votes
1
reply
36
views
How to get Data from https://www.orthodb.org/ by the list of UniprotID
Bioinformatics
updated 3 hours ago by
GenoMax
99k • written 11 hours ago by
Trinh
• 0
1
vote
4
replies
67
views
samtools idxstats unplaced contigs
contig
STAR
samtools
updated 4 hours ago by
Martombo
★ 2.7k • written 5 hours ago by
LacquerHed
• 0
0
votes
2
replies
43
views
16S data classification using kraken and centrifuge
centrifuge
16S
classification
kraken
updated 3 hours ago by
cpad0112
15k • written 4 hours ago by
twinklemishra0892
• 0
0
votes
3
replies
70
views
Differential expression analysis with LIMMA results
DGE
5 hours ago by
najioumayma
▴ 10
0
votes
0
replies
55
views
Job:
Bioinformatician/Programmer at the University of Pennsylvania
pipelines
programmer
bioinformatician
python
r
5 hours ago by
adamnaj
• 0
0
votes
1
reply
38
views
Is there a way to include not conda package/programs to snakemake environment?
Non-Conda_packages
Snakemake
updated 4 hours ago by
Arup Ghosh
2.8k • written 5 hours ago by
lmlukoseviciute
▴ 20
1
vote
1
reply
45
views
How to download all the Zn-binding protein sequences from MetalPDB?
PDB
NCBI
protein
python
database
updated 5 hours ago by
GenoMax
99k • written 6 hours ago by
Kumar
▴ 50
0
votes
0
replies
23
views
How to assemble short DNA sequences using ABYSS?
sequence
multiple-alignment
assembly
6 hours ago by
anikcropscience
▴ 40
0
votes
0
replies
35
views
Job:
Bioinformatician at Turbine / Hungary
proteomics
cancerreserach
singlecell
python
r
6 hours ago by
timea.volenter
• 0
0
votes
1
reply
40
views
How to run SPAdes assembler with bam files?
spades
assembler
bam
updated 6 hours ago by
GenoMax
99k • written 6 hours ago by
marongiu.luigi
▴ 560
2
votes
1
reply
54
views
Filter contig fasta file by GC content
contig
gc
updated 6 hours ago by
GenoMax
99k • written 7 hours ago by
victoriahristovaa
• 0
0
votes
0
replies
20
views
Why were all TCGA SVS slides redacted?
slides
slide
tcga
svs
digital
7 hours ago by
ceruleanivy
▴ 30
0
votes
0
replies
23
views
DisGeNET plugin usage error
DisGeNET
phenotype
plugin
vep
6 hours ago by
enes
• 0
0
votes
0
replies
18
views
negative BAF values OH
LOH
cnvkit
BAF
7 hours ago by
John
• 0
0
votes
2
replies
81
views
MASURCA output
masurca
8 hours ago by
kilcdincer
▴ 10
0
votes
0
replies
37
views
Job:
Research assistant in straining engineering at DTU Center of Biosustainability
engineering
coli
Biofoundry
E.
Strain
9 hours ago by
info
▴ 60
0
votes
0
replies
31
views
Job:
Research assistant for yeast natural products project at DTU Biosustain
yeast
preps
DNA
DTU
Biosustain
CRISPR
9 hours ago by
info
▴ 60
1
vote
8
replies
139
views
how to select peaks at not transcribed genes
bedtools
transcribed
peaks
not_trasncribed
updated 5 hours ago by
ATpoint
48k • written 10 hours ago by
Lila M
▴ 910
0
votes
0
replies
30
views
Job:
Analytical chemist (RA) for yeast natural products project at DTU Biosustain
HPLC
yeast
biochemistry
10 hours ago by
info
▴ 60
9
votes
8
replies
129
views
How to combine 2 incomplete GTF
Cufflinks
Cuffcompare
GTF
Cuffmerge
Merge
7 hours ago by
rafaelsolersanblas
▴ 70
5
votes
3
replies
173
views
R command worked yesterday, but stalls today?
R
updated 5 hours ago by
Ram
32k • written 1 day ago by
cthangav
• 0
0
votes
4
replies
145
views
Snakemake with bwa_mem2_mem unable to open the ref file and doesn' t work
bwa-mem2
conda
snakemake
pipeline
9 hours ago by
aka
• 0
3
votes
3
replies
90
views
Extract chromosome 1 - 22 fasta file
fasta
updated 12 hours ago by
shenwei356
5.8k • written 13 hours ago by
shubhamkumbhar420
• 0
0
votes
1
reply
70
views
GATK GenomicsDBImport for consolidate GVCF
GATK
GenomicsDBImport
consolidate
updated 13 hours ago by
Pierre Lindenbaum
135k • written 13 hours ago by
mscpythonstudy
• 0
0
votes
1
reply
83
views
Question about methods monitoring the change from dsDNA/RNA to ssRNA/DNA
RNA
DNA
chaser
Substrate
updated 12 hours ago by
ATpoint
48k • written 15 hours ago by
1063625819
• 0
0
votes
1
reply
86
views
SHAPEIT2 - ERROR "BAD RECOMBINATION RATE"
shapeit2
phasing
updated 12 hours ago by
4galaxy77
▴ 400 • written 16 hours ago by
GiantSilverSoy
▴ 20
0
votes
0
replies
74
views
How to download pedigree (SNP's) from cattle
pedigree
data
snp
inference
haplotype
17 hours ago by
S. Roa
• 0
0
votes
0
replies
61
views
Job:
Multiple data scientist positions in computational biomedicine
CompBiology
Bioinformatics
MachineLearning
17 hours ago by
pandey.gaurav
▴ 130
4
votes
5
replies
148
views
GSEA for RNA_seq dataset
DEGs
GSEA
RNA_seq
updated 9 hours ago by
ATpoint
48k • written 1 day ago by
1961012
• 0
0
votes
0
replies
33
views
OMA output document error
OMA
output
document
error
18 hours ago by
Yong
• 0
4
votes
4
replies
112
views
Hunting invisible characters?
adaptor
adapter
grep
updated 20 hours ago by
seidel
7.6k • written 23 hours ago by
geneticatt
▴ 120
0
votes
0
replies
42
views
Alternative Refence Allele in PLINK2 data files
PLINK2
ALLELE
22 hours ago by
carlstat123
• 0
2
votes
4
replies
161
views
How can I Extract Transposable element from a new genome assembly?
genome
transposons
assembly
annotations
5 hours ago by
jaqx008
▴ 90
1
vote
1
reply
94
views
differential expression analysis
CRITERIA
DEGS
THRESOLD
updated 23 hours ago by
Mensur Dlakic
★ 10k • written 1 day ago by
au.rinki.bio
▴ 10
21
votes
4
replies
2.3k
views
Tutorial:
A simple tutorial for a complex ComplexHeatmap
complexheatmap
clustering
arthritis
pam
Tutorial
updated 19 hours ago by
Rob
▴ 40 • written 11 months ago by
Kevin Blighe
72k
3
votes
2
replies
192
views
SNP's datasets and pedigreees
SNP
data
inference
haplotype
pedigrees
base
1 day ago by
S. Roa
• 0
0
votes
3
replies
186
views
Arlequin problem (different loci number among different genotypes)
SNP
updated 1 day ago by
lieven.sterck
11k • written 26 days ago by
wangh920
• 0
4
votes
1
reply
2.8k
views
Tool:
Clustering of short peptide sequences
peptide
clustering
phage display
Tool
updated 1 day ago by
xiaoyuzhangh
• 0 • written 5.5 years ago by
jockbanan
▴ 390
2
votes
3
replies
100
views
X amino acid in ensembl
aminoacid
alignment
ensembl
protein
sequence
updated 23 hours ago by
Mensur Dlakic
★ 10k • written 1 day ago by
Jason
• 0
0
votes
11
replies
366
views
File conversion from coordinates to genes
conversion
updated 1 day ago by
Alex Reynolds
32k • written 17 days ago by
storm1907
• 0
90,505 results • Page
1 of 1811
Recent Votes
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Answer: How to download all the Zn-binding protein sequences from MetalPDB?
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Recent Replies
Comment: Redundancy reduction of de novo transcriptome assemblies with Compacta?
by
Dunois
▴ 620
Hi @genomax , how are you? I'm looking at `Compacta` because I'd rather not use `CD-HIT` or `MMseqs2` if I can.
Comment: Redundancy reduction of de novo transcriptome assemblies with Compacta?
by
GenoMax
99k
Have you tried `CD-HIT` ([**LINK**][1]) for this application? [1]: http://weizhongli-lab.org/cd-hit/
Comment: Cellranger count.srun issues
by
GenoMax
99k
That does not make logical sense based on error which said command not found. If a prior script worked with same `PATH` but if this is gene…
Comment: Cellranger count.srun issues
by
gonzalezb549
• 0
cellranger is for sure installed. A sample script using the same commands just different fastq paths worked fine but for some reason this s…
Comment: Cellranger count.srun issues
by
gonzalezb549
• 0
The path used has worked on previous scripts but I tried what you said. It still resulted in the same error.
Comment: Which Fasta file and GTF file to use in STAR alignment
by
opplatek
▴ 110
You don't have to change the default `--sjdbOverhang` value unless you have very short reads (less than 50 bp; see [here][1]). If your read…
Comment: Cellranger count.srun issues
by
GenoMax
99k
> cellranger: command not found. Are you sure this `PATH` value is correct `/network/rit/misc/scratch/single_cell/cellranger/cellranger=3.…
Comment: Cellranger count.srun issues
by
swbarnes2
9.7k
Well, did you make sure cellranger was installed?
Answer: Up-to-date GWAS Power Calculator and GWAS power comparison
by
Kevin Blighe
72k
Hi, Please try CaTS: http://csg.sph.umich.edu/abecasis/cats/ Kevin
Answer: How to design WGCNA: one analysis over all sample or seperate analysis (using c
by
Kevin Blighe
72k
> Use all samples in one adjacency matrix to identify modules once. In this scenario, after you have identified the modules, you would cor…
Answer: Contradiction in Harzard ratio and Log fold change
by
Kevin Blighe
72k
Hi, There is no issue here, in my opinion. Consider the following 3 scenarios: - a tumour suppressor gene is deleted or heavily methyla…
Comment: How to plot a image like this.
by
galen.seilis
• 0
I just noticed the colourbar above. For that it would be preferable to use slicing notation to assign those regions compared to looping and…
Comment: How to plot a image like this.
by
galen.seilis
• 0
I hope someone directs you to a package that does what you want. If not, I have good news. This diagram is easy to make without a specializ…
Comment: 16S data classification using kraken and centrifuge
by
cpad0112
15k
and equivalent parameters in both the programs
Comment: How to plot a image like this.
by
GenoMax
99k
[GenVisR][1] is a possible option. [1]: https://bioconductor.org/packages/release/bioc/vignettes/GenVisR/inst/doc/Intro.html#1_GenVisR
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