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Is it correct to pool transcriptomes coming from different experiment for DE analysis?
differential-expression rna-seq written 12 weeks ago by keepclam • 0 • updated 12 weeks ago by WouterDeCoster ♦ 34k
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FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 17 months ago by s.herrera706 • 0 • updated 3 months ago by Biostar ♦♦ 20
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Differential Expression from Quantile-Norm Data
differential-expression rna-seq written 6 months ago by matthew.m.hernandez • 30 • updated 6 months ago by Hussain Ather • 880
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5 follow
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Is it appropriate to assume genes of similar expression level also have similar variance?
differential-expression deseq written 10 months ago by -_- • 710 • updated 10 months ago by Santosh Anand • 4.2k
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Why Cannot Limma Package Do Differential Expression Between Two Samples Without Replication?
replicates differential-expression limma affymetrix written 5.4 years ago by shangzhong0619 • 20 • updated 10 months ago by Biostar ♦♦ 20
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Intersection of multiple methods for RNA-Seq differential expression: conservative or crazy?
differential-expression rna-seq written 13 months ago by Adamc • 540 • updated 13 months ago by Friederike • 2.3k
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Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
sleuth differential-expression rna-seq written 15 months ago by elsoja • 30
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 4.1 years ago by Whetting • 1.5k • updated 14 months ago by KVC_bioinfo • 350
2
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Multiple group model matrix in rna-seq DE analysis
differential-expression rna-seq model-matrix written 16 months ago by andrea.rubiop88 • 0 • updated 16 months ago by Devon Ryan ♦ 86k
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MA plot from Differential Expression between One Sample vs another
R bioconductor differential-expression rna-seq written 17 months ago by Ron • 820
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Select top differentially expressed genes based on both p-value and fold-change
differential-expression deseq2 rna-seq written 19 months ago by RT • 330 • updated 19 months ago by Santosh Anand • 4.2k
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De Genes And Isoforms?
ngs differential-expression rna-seq written 5.6 years ago by lzsph • 70 • updated 19 months ago by Biostar ♦♦ 20
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Differences between Counts and FPKMS
next-gen differential-expression deseq rna-seq written 21 months ago by Ron • 820 • updated 21 months ago by Rob ♦ 2.8k
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9 follow
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Identifying De Novo Variants In Trio Data
gatk differential-expression variant written 6.4 years ago by Vivek • 2.2k • updated 2.1 years ago by daniel • 30
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5 follow
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How Do I Estimate The Number Of Rna-Seq Reads Needed To Detect Differential Expression?
reads differential-expression rna-seq written 5.0 years ago by scottdaniel25 • 30 • updated 2.3 years ago by Biostar ♦♦ 20
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Limma calls all genes as differentially expressed - what am I doing wrong?
differential-expression limma rna-seq voom written 4.1 years ago by Amusement Pork • 60 • updated 4.1 years ago by Manvendra Singh • 2.0k
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What's the real difference between these two types of methods for assessing differential expression?
differential-expression methods rna-seq written 4.1 years ago by Amusement Pork • 60
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9 follow
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Rna-Seq Data Normalization With Spike-In Using Deseq
R differential-expression bioinformatics written 5.2 years ago by vchris_ngs • 4.5k • updated 4.3 years ago by Reza • 10
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8 follow
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Deseq Vs Edger..Filtering Read Counts.
deseq differential-expression tophat2 rna-seq rnaseq edger written 4.8 years ago by geek_y ♦ 8.8k • updated 4.4 years ago by bioinforupesh2009.au • 100
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Best Workflow For Differential Expression Analysis Using De Novo Transcriptomes And Illumina Reads In 2014
differential-expression workflow alignment written 4.7 years ago by Birdman • 20 • updated 4.7 years ago by seidel ♦ 6.6k
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Generating Counts Data From Fastq Sequence Files
fastq differential-expression counts rna-seq sequencing written 4.7 years ago by josph.sh • 0 • updated 4.7 years ago by Xingyu Yang • 260
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Normalization And Differential Expression Analysis Of Mass Spectrometry Data
proteomics normalization differential-expression mass-spec R written 4.7 years ago by Ali • 140 • updated 4.7 years ago by Woa • 2.7k
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How To Use Sam
sam differential differential-expression R gene expression microarray written 4.7 years ago by avi4you • 20 • updated 4.7 years ago by QVINTVS_FABIVS_MAXIMVS • 2.1k
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5 follow
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Go Analysis From De-Genes
differential-expression go written 4.7 years ago by Phil S. • 660 • updated 4.7 years ago by Floris Brenk • 860
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Cuffdiff Output Interpretation
differential-expression cuffdiff written 4.8 years ago by madkitty • 570
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Differential Expression Analysis Using Two Different De Novo Assembled Transcriptomes
differential-expression rna-seq written 4.8 years ago by Birdman • 20 • updated 4.8 years ago by Charles Warden ♦ 5.6k
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Mirna And Deseq
bioinformatics differential-expression deseq written 4.9 years ago by bioinforupesh2009.au • 100 • updated 4.9 years ago by IV • 1.2k
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9 follow
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Differential Analysis Of Proteomics Data
proteomics differential-expression analysis written 4.9 years ago by Assa Yeroslaviz • 1.1k • updated 4.9 years ago by Ahill • 1.2k
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All Probes In The Array Show Larger Than 0.1 Fdr ??
differential-expression microarray written 4.9 years ago by CrazyB • 200 • updated 4.9 years ago by Charles Warden ♦ 5.6k
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Negative B-Statistic Values In Limma/Microarray Differential Expression
differential-expression limma written 4.9 years ago by CrazyB • 200 • updated 4.9 years ago by Sean Davis ♦ 25k
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