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Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
sleuth differential-expression rna-seq written 9 weeks ago by elsoja • 20
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 3.1 years ago by Whetting • 1.5k • updated 5 weeks ago by KVC_bioinfo • 110
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Multiple group model matrix in rna-seq DE analysis
differential-expression rna-seq model-matrix written 3 months ago by andrea.rubiop88 • 0 • updated 3 months ago by Devon Ryan ♦ 71k
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FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 3 months ago by s.herrera706 • 0
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MA plot from Differential Expression between One Sample vs another
R bioconductor differential-expression rna-seq written 4 months ago by Ron • 600
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Select top differentially expressed genes based on both p-value and fold-change
differential-expression deseq2 rna-seq written 5 months ago by RT • 300 • updated 5 months ago by Santosh Anand • 3.0k
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De Genes And Isoforms?
ngs differential-expression rna-seq written 4.5 years ago by lzsph • 70 • updated 6 months ago by Biostar ♦♦ 20
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Differences between Counts and FPKMS
next-gen differential-expression deseq rna-seq written 8 months ago by Ron • 600 • updated 8 months ago by Rob ♦ 2.1k
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Identifying De Novo Variants In Trio Data
gatk differential-expression variant written 5.3 years ago by Vivek • 1.9k • updated 12 months ago by daniel • 30
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How Do I Estimate The Number Of Rna-Seq Reads Needed To Detect Differential Expression?
reads differential-expression rna-seq written 3.9 years ago by scottdaniel25 • 30 • updated 14 months ago by Biostar ♦♦ 20
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Limma calls all genes as differentially expressed - what am I doing wrong?
differential-expression limma rna-seq voom written 3.0 years ago by Amusement Pork • 60 • updated 3.0 years ago by Manvendra Singh • 1.9k
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What's the real difference between these two types of methods for assessing differential expression?
differential-expression methods rna-seq written 3.1 years ago by Amusement Pork • 60
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Rna-Seq Data Normalization With Spike-In Using Deseq
R differential-expression bioinformatics written 4.2 years ago by vchris_ngs • 4.0k • updated 3.2 years ago by Reza • 10
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Deseq Vs Edger..Filtering Read Counts.
deseq differential-expression tophat2 rna-seq rnaseq edger written 3.7 years ago by geek_y ♦ 8.0k • updated 3.3 years ago by bioinforupesh2009.au • 90
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Best Workflow For Differential Expression Analysis Using De Novo Transcriptomes And Illumina Reads In 2014
differential-expression workflow alignment written 3.6 years ago by Birdman • 20 • updated 3.6 years ago by seidel ♦ 6.3k
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Generating Counts Data From Fastq Sequence Files
fastq differential-expression counts rna-seq sequencing written 3.6 years ago by josph.sh • 0 • updated 3.6 years ago by Xingyu Yang • 250
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Normalization And Differential Expression Analysis Of Mass Spectrometry Data
proteomics normalization differential-expression mass-spec R written 3.6 years ago by Ali • 130 • updated 3.6 years ago by Woa • 2.6k
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How To Use Sam
sam differential differential-expression R gene expression microarray written 3.7 years ago by avi4you • 20 • updated 3.7 years ago by QVINTVS_FABIVS_MAXIMVS • 2.0k
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Go Analysis From De-Genes
differential-expression go written 3.7 years ago by Phil S. • 630 • updated 3.7 years ago by Floris Brenk • 790
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Cuffdiff Output Interpretation
differential-expression cuffdiff written 3.7 years ago by madkitty • 500
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Differential Expression Analysis Using Two Different De Novo Assembled Transcriptomes
differential-expression rna-seq written 3.7 years ago by Birdman • 20 • updated 3.7 years ago by Charles Warden ♦ 4.9k
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Mirna And Deseq
bioinformatics differential-expression deseq written 3.8 years ago by bioinforupesh2009.au • 90 • updated 3.8 years ago by IV • 1.1k
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Differential Analysis Of Proteomics Data
proteomics differential-expression analysis written 3.8 years ago by Assa Yeroslaviz • 1.1k • updated 3.8 years ago by Ahill • 950
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All Probes In The Array Show Larger Than 0.1 Fdr ??
differential-expression microarray written 3.8 years ago by CrazyB • 180 • updated 3.8 years ago by Charles Warden ♦ 4.9k
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Negative B-Statistic Values In Limma/Microarray Differential Expression
differential-expression limma written 3.8 years ago by CrazyB • 180 • updated 3.8 years ago by Sean Davis ♦ 23k
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Determining Most Diagnostic Differentially Expressed Genes
differential-expression rna-seq written 3.9 years ago by Daniel Standage ♦ 3.7k
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I Need Help Understanding What The '-Max-Frag-Count-Draws' Option Means In Cuffdiff
cufflinks ngs differential-expression written 3.9 years ago by thakkar.bjl • 0 • updated 3.9 years ago by Istvan Albert ♦♦ 74k
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Methods For Comparing Microarrays From Different Datasets
normalization differential-expression microarray written 4.4 years ago by Adam Cornwell • 360 • updated 3.9 years ago by Biostar ♦♦ 20
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6 follow
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How To Compare 2 Differential Expressed Transcripts From 2 Different De Novo Assembly?
bioinformatics differential-expression rna-seq velvet trinity written 3.9 years ago by nbvasani • 200
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How To Find Differentially Expressed Transcripts Across Tissues?
differential-expression rna-seq written 4.0 years ago by daattali • 40 • updated 4.0 years ago by lkmklsmn • 720
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