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Filtering criteria for selecting DEGs from Monocle3 regression analysis with categorical terms
differential-expression rna-seq monocle written 9 weeks ago by gundalav • 290
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Differential expression tool that can take TPM as input?
differential-expression tpm rna-seq written 11 weeks ago by Tye Kahn • 10 • updated 11 weeks ago by ATpoint ♦ 29k
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Identifiyng mutual trends between treatments
differential-expression deseq2 rna-seq statistics written 14 months ago by uriamo • 0 • updated 14 months ago by kristoffer.vittingseerup • 3.0k
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Is it correct to pool transcriptomes coming from different experiment for DE analysis?
differential-expression rna-seq written 18 months ago by keepclam • 0 • updated 18 months ago by WouterDeCoster ♦ 43k
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FPKM values from SE vs. PE RNA-Seq libraries
gene fpkm differential-expression rna-seq written 2.7 years ago by s_herrera • 10 • updated 18 months ago by Biostar ♦♦ 20
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Differential Expression from Quantile-Norm Data
differential-expression rna-seq written 22 months ago by matthew.m.hernandez • 30 • updated 22 months ago by Hussain Ather • 940
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Is it appropriate to assume genes of similar expression level also have similar variance?
differential-expression deseq written 2.1 years ago by -_- • 840 • updated 2.1 years ago by Santosh Anand ♦ 5.0k
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9 follow
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Why Cannot Limma Package Do Differential Expression Between Two Samples Without Replication?
replicates differential-expression limma affymetrix written 6.7 years ago by shangzhong0619 • 20 • updated 2.1 years ago by Biostar ♦♦ 20
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7 follow
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Intersection of multiple methods for RNA-Seq differential expression: conservative or crazy?
differential-expression rna-seq written 2.3 years ago by Adamc • 640 • updated 2.3 years ago by Friederike ♦ 5.3k
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Transcripts with beta close to zero are considered differentially expressed in a likelihood-ratio test in sleuth
sleuth differential-expression rna-seq written 2.5 years ago by elsoja • 100
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differential expression based on multiple biological repeats
rpkm differential-expression rna-seq written 5.4 years ago by Whetting • 1.5k • updated 2.4 years ago by KVC_bioinfo • 410
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Multiple group model matrix in rna-seq DE analysis
differential-expression rna-seq model-matrix written 2.6 years ago by andrea.rubiop88 • 0 • updated 2.6 years ago by Devon Ryan ♦ 94k
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MA plot from Differential Expression between One Sample vs another
R bioconductor differential-expression rna-seq written 2.7 years ago by Ron • 990
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5 follow
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Select top differentially expressed genes based on both p-value and fold-change
differential-expression deseq2 rna-seq written 2.8 years ago by RT • 340 • updated 2.8 years ago by Santosh Anand ♦ 5.0k
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5 follow
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De Genes And Isoforms?
ngs differential-expression rna-seq written 6.8 years ago by lzsph • 70 • updated 2.8 years ago by Biostar ♦♦ 20
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Differences between Counts and FPKMS
next-gen differential-expression deseq rna-seq written 3.0 years ago by Ron • 990 • updated 3.0 years ago by Rob ♦ 3.7k
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9 follow
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Identifying De Novo Variants In Trio Data
gatk differential-expression variant written 7.6 years ago by Vivek • 2.4k • updated 3.4 years ago by daniel • 30
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5 follow
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How Do I Estimate The Number Of Rna-Seq Reads Needed To Detect Differential Expression?
reads differential-expression rna-seq written 6.3 years ago by scottdaniel25 • 30 • updated 3.6 years ago by Biostar ♦♦ 20
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Limma calls all genes as differentially expressed - what am I doing wrong?
differential-expression limma rna-seq voom written 5.4 years ago by Amusement Pork • 60 • updated 5.4 years ago by Manvendra Singh • 2.1k
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What's the real difference between these two types of methods for assessing differential expression?
differential-expression methods rna-seq written 5.4 years ago by Amusement Pork • 60
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9 follow
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Rna-Seq Data Normalization With Spike-In Using Deseq
R differential-expression bioinformatics written 6.5 years ago by ivivek_ngs • 4.9k • updated 5.6 years ago by Reza • 10
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8 follow
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Deseq Vs Edger..Filtering Read Counts.
deseq differential-expression tophat2 rna-seq rnaseq edger written 6.0 years ago by geek_y ♦ 10k • updated 5.7 years ago by bioinforupesh2009.au • 110
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Best Workflow For Differential Expression Analysis Using De Novo Transcriptomes And Illumina Reads In 2014
differential-expression workflow alignment written 5.9 years ago by Birdman • 20 • updated 5.9 years ago by seidel ♦ 6.9k
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Generating Counts Data From Fastq Sequence Files
fastq differential-expression counts rna-seq sequencing written 5.9 years ago by josph.sh • 0 • updated 5.9 years ago by Xingyu Yang • 260
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Normalization And Differential Expression Analysis Of Mass Spectrometry Data
proteomics normalization differential-expression mass-spec R written 5.9 years ago by Ali • 140 • updated 5.9 years ago by Woa • 2.7k
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5 follow
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Go Analysis From De-Genes
differential-expression go written 6.0 years ago by Phil S. • 660 • updated 6.0 years ago by Floris Brenk • 900
3
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12k
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1
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Cuffdiff Output Interpretation
differential-expression cuffdiff written 6.0 years ago by madkitty • 590
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Differential Expression Analysis Using Two Different De Novo Assembled Transcriptomes
differential-expression rna-seq written 6.0 years ago by Birdman • 20 • updated 6.0 years ago by Charles Warden ♦ 7.6k
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Mirna And Deseq
bioinformatics differential-expression deseq written 6.1 years ago by bioinforupesh2009.au • 110 • updated 6.1 years ago by IV • 1.3k
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9 follow
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Differential Analysis Of Proteomics Data
proteomics differential-expression analysis written 6.1 years ago by Assa Yeroslaviz • 1.3k • updated 6.1 years ago by Ahill • 1.8k
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