discussion Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: discussion • reset

or Classic search

votes

answers

807

views

6 follow

answers

Forum: Hand-waving Multidisciplinary Aspects of Research Projects (Discussion)

ethics forum discussion research publications written 16 months ago by Spencenerd • 10 • updated 16 months ago by John ♦ 12k

votes

answers

1.7k

views

answers

Forum: Finally the much awaited DAVID update has taken place. Thoughts in the community will be appreciated

david forum gene ontology discussion go written 2.1 years ago by vchris_ngs • 4.5k • updated 2.1 years ago by Pierre Lindenbaum ♦ 108k

votes

answers

1.1k

views

answers

Forum: “Systematic pattern of excess success"

discussion forum paper statistics written 3.5 years ago by mikhail.shugay ♦ 3.3k • updated 3.5 years ago by Gregory.Francis • 20

votes

answer

1.1k

views

answer

Forum: Is Bioinformatics a creative field/industry?

forum discussion written 3.5 years ago by 14134125465346445 • 3.4k

Recent Votes

Recent Locations • All »

United States, just now
Hong Kong, 3 minutes ago
New Zealand, 5 minutes ago
China, 8 minutes ago
United Kingdom, 9 minutes ago

Recent Awards • All »

Scholar to b.nota • 3.9k
Good Answer to Kevin Blighe ♦ 21k
Scholar to Jean-Karim Heriche ♦ 15k
Scholar to finswimmer ♦ 2.7k
Commentator to WouterDeCoster ♦ 29k
Teacher to WouterDeCoster ♦ 29k

Recent Replies

A: FlexiDot: highly customizable, ambiguity-aware dotplots by toheitka • 160
# New [FlexiDot](https://github.com/molbio-dresden/flexidot) version released: ## Annotation-base...
C: How to manage self loops in gene coexpression network constructed from RNA-seq d by Kevin Blighe ♦ 21k
Good point, zx8754
A: how to get read density for the first 1000 nt of each transcript by Devon Ryan ♦ 80k
About 22 months too late, but using deepTools: 1. Use `bamCoverage` to get a bigWig of the files...
C: How to manage self loops in gene coexpression network constructed from RNA-seq d by zx8754 ♦ 4.5k
Maybe *diag* is safer? diag(cormat) <- NA --------- Other useful functions: `lower.tri`...
C: haplotypecaller can not run in single bam file by genomax ♦ 49k
What does that mean? Can you provide the actual commandline you used?
A: reasons for htseq-count with zero features by genomax ♦ 49k
Have you looked at the alignment report for that sample and if so what does it say. Perhaps you r...
C: Pathway enrichment with differential expression p-values by DVA • 450
Thanks so much for the information!
C: Issue using MaSuRCA-3.2.6 by Kevin Blighe ♦ 21k
Okay, apologies that I could not assist in this case. I would contact the developers, but chances...
C: How to manage self loops in gene coexpression network constructed from RNA-seq d by Kevin Blighe ♦ 21k
Clustering algorithms will just cluster whatever data you provide. To remove self-loops, you can ...
C: Stringtie output files by Kevin Blighe ♦ 21k
I should additionally point out that *DDX11L1* is a pseudogene. So, it makes sense that it may ha...
C: Applying a function to a matrix by zx8754 ♦ 4.5k
Absolutely **no** reason to use `apply` in this case, simple `2^log.data` is about 200x faster. (...
A: Pathway enrichment with differential expression p-values by b.nota • 3.9k
There is a nice review in [Plos Comp][1] about the different methods that are available for pathw...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 637 users visited in the last hour