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What should I do when some probes of a gene is detected as hypomethylated and other probes of the same gene is hypermethylated
dna methylation hyper-hypomethyaltion same gene written 6 weeks ago by nazaninhoseinkhan • 390
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90
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how to analysis after get methylation matrix for 850K array?
450k dna methylation 850k methylationepic written 9 weeks ago by Shaway • 0
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75
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How to deal with the twice BS-seq data for the same sample?
dna methylation bs-seq written 11 weeks ago by younglin113 • 40
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1
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114
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1
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How to test differential methylated regions in R
R cpg island dna methylation written 12 weeks ago by Shaway • 0 • updated 11 weeks ago by Kevin Blighe ♦ 54k
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384
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Job: PhD candidate position in Computational Biology and Gene Regulation
dna methylation gene regulation job genomics written 4 months ago by Anthony Mathelier • 880
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735
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Normalization for combined data from multiple sources: ssNoob + BMIQ/quantile?
450k dna methylation epic normalization R written 2.6 years ago by victor.2wy • 0 • updated 4 months ago by Biostar ♦♦ 20
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172
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DMRcate results: How to interpret the overlapping.promoters
dna methylation dmrcate R champ written 5 months ago by sugus • 40
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286
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Newbie questions about Bismark deduplication step and --bedgraph output
bisulfite seq epigenetics bismark dna methylation written 7 months ago by yh362 • 30
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1
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348
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1
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WGCNA on methylation data
dna methylation wgcna normalization written 8 months ago by enora.fremy • 10 • updated 8 months ago by Kevin Blighe ♦ 54k
3
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1
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351
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1
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Plausibility of performing t-test on methylation beta values.
beta value dna methylation statistical test written 8 months ago by catechize.2.learn • 110 • updated 8 months ago by Kevin Blighe ♦ 54k
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1
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Beta values for hyper- and hypo- methylated probes
dna methylation epic microarray rnbeads illumina written 24 months ago by rasii • 0 • updated 9 months ago by archi • 0
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1
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1.2k
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1
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TCGA DNA methylation data pipeline
dna methylation tcga pipeline written 12 months ago by yuabrahamliu • 40 • updated 12 months ago by Charles Warden ♦ 7.6k
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1
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1.4k
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1
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Analysis of DNA Methylation data from TCGA
dna methylation tcga written 13 months ago by adriankoh002 • 10 • updated 13 months ago by Kevin Blighe ♦ 54k
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1.2k
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1
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Illumina Human Methylation EPIC array annotation
dna methylation epic array annotation written 14 months ago by janhuang.cn • 150 • updated 14 months ago by Charles Warden ♦ 7.6k
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315
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Annotation of Methylation data in GDC Portal
dna methylation tcga illumina 450k gdc written 15 months ago by noorpratap.singh • 290
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496
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How to quantify the DNA methylation level of a gene from WGBS data?
R quantify tool dna methylation written 15 months ago by wangzer • 0 • updated 15 months ago by Devon Ryan ♦ 94k
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533
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Job: Postdoctoral Research Scientist - Computational Epigenetics: University of Oxford
dna methylation epigenetics job written 15 months ago by olin0151 • 0
5
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1
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518
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1
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Simple integrative DNA methylation and mRNA expression analysis
dna methylation rna-seq data integration written 15 months ago by Will • 0 • updated 15 months ago by Kevin Blighe ♦ 54k
3
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1
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535
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1
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Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R gdc rna-seq dna methylation written 16 months ago by rjactonspsfcf • 110
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1
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518
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1
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GDC data portal - Tumour and Adjacent normal
dna methylation tcga gdc rna-seq written 17 months ago by rjactonspsfcf • 110 • updated 17 months ago by Kevin Blighe ♦ 54k
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344
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Large numbers of biological replicates for detecting DMCs and DMRs
dna methylation rrbs many replicates written 21 months ago by yongxpeng • 0
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1.1k
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1
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Interpreting probes in Illumina 450k array
dna methylation illumina 450k cpg written 2.0 years ago by noorpratap.singh • 290
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751
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DNA Methylation Analysis
dna methylation ngs matrix R python written 23 months ago by caspase8mach • 0
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6 follow
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Tutorial: Differentially methylated regions: Easy & Fast Identification and ANnoTation
dna methylation tutorial dmr written 24 months ago by dec986 • 210
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545
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DMR.plot Erreur : Bad Request
R dmrcate dna methylation written 2.1 years ago by daron.6 • 0
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768
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Job: Postdoc in Computational Biology - Transcription Factors and DNA methylation, University of Oslo, Oslo, Norway
dna methylation transcription factor job cancer written 2.2 years ago by Anthony Mathelier • 880 • updated 2.2 years ago by genomax ♦ 78k
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1.3k
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How to get metthylKit(or SMART2) input file ?
dna methylation dmr bismark methylkit written 2.3 years ago by wangzer • 0
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1
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1.6k
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1
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Working with Differentially Methylated Regions(DMRs)
dna methylation tcga dmrs minfi written 2.4 years ago by noorpratap.singh • 290 • updated 2.4 years ago by Kevin Blighe ♦ 54k
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1
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797
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Filtering in DNA methylation
dna methylation preprocessing filtering written 2.4 years ago by noorpratap.singh • 290 • updated 2.4 years ago by Kevin Blighe ♦ 54k
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629
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0
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Differntial peak analysis for MethylCap-seq
dna methylation differntial peaks ngs R written 2.5 years ago by Ice P • 0
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