dna sequence Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answers

124

views

answers

Extracting Allele Frequencies at a set of given positions

vcf allele frequnecy whole genome dna sequence written 11 weeks ago by kmkdesilva • 80

votes

answer

217

views

6 follow

answer

Chunk That Fasta?

fasta python dna sequence chunk written 4 months ago by damonlbp • 20 • updated 4 months ago by massa.kassa.sc3na • 230

votes

answer

644

views

5 follow

answer

Retrieving sequences from Ensembl Archive

ensembl dna sequence ensembl archive written 19 months ago by biostR • 0 • updated 5 months ago by becton • 10

votes

answers

171

views

answers

Program to align big DNA sequences (100000 bases) and look at conserved regions among them?

dna sequence alignment conserved region written 9 months ago by DanielC • 100

vote

answers

546

views

answers

Get genome position and sequence with extra bases of a DNA sequence (python)

python dna sequence position biopython written 11 months ago by PaSua • 0 • updated 11 months ago by Joe ♦ 16k

votes

answers

473

views

answers

Problem to Understand the visualization of IGV

dna sequence visualization igv written 16 months ago by saadleeshehreen • 70 • updated 16 months ago by Devon Ryan ♦ 94k

vote

answers

486

views

answers

tools to align DNA sequences against protein sequence

dna sequence alignment fastq files written 19 months ago by Ana • 170

votes

answer

1.2k

views

answer

How to increase the speed of subread for DNA whole genome sequence

speed dna sequence subread written 3.4 years ago by tarek.mohamed • 260 • updated 21 months ago by andysw90 • 20

votes

answers

2.2k

views

answers

MCF-7 Cell Line DNA Sequence Data

wxs wgs cancer cell line dna sequence mcf-7 written 3.3 years ago by bioinformatics.cancer • 200 • updated 3.2 years ago by ATpoint ♦ 29k

votes

answer

841

views

answer

probability of 2 sequences with defined distance in fully sequenced genomes

p-value probability dna sequence e-value written 3.6 years ago by Anand Rao • 280 • updated 3.6 years ago by Vince FitzPatrick • 10

vote

answer

2.0k

views

answer

Calculate pair-wise dissimilarity of DNA sequences in Python

python dna sequence alignment similarity written 4.9 years ago by songzewei • 10

Recent Votes

Recent Locations • All »

University of Maryland, 5 minutes ago
Argentina, 5 minutes ago
United States, 14 minutes ago

Recent Awards • All »

Commentator to Pierre Lindenbaum ♦ 126k
Teacher to Pierre Lindenbaum ♦ 126k
Scholar to Pierre Lindenbaum ♦ 126k
Appreciated to Devon Ryan ♦ 94k
Teacher to Joe ♦ 16k
Teacher to liorglic • 150

Recent Replies

C: warning when creating salmon index from GENCODE transcriptome by cmdcolin • 1.3k
It is generally just a weird thing where the "format of FASTA headers" is always just some gobble...
C: warning when creating salmon index from GENCODE transcriptome by vaushev • 10
Thank you Rob! I didn't realize I could add the `--gencode` option directly to `salmon` call (it'...
C: Generate sequence alignment and heatmap for TF binding sites by Asaf ♦ 7.0k
So you can represent the MSA as a matrix and you plain heatmap
A: warning when creating salmon index from GENCODE transcriptome by Rob ♦ 3.7k
The reason salmon gives this message is because the Gencode transcripts have (for the purposes mo...
C: Generate sequence alignment and heatmap for TF binding sites by rioualen • 390
Yeah I know it, but I'm not looking to produce the logo, I'm rather interested in how the sequenc...
A: How to convert my first column containing duplicate names to the row names by swbarnes2 ♦ 7.5k
You can't make gene names row names, as they might not be unique, and in your data, they are not....
A: Generate sequence alignment and heatmap for TF binding sites by Asaf ♦ 7.0k
You've got good old [WebLOGO][1]. It doesn't produce the heatmap but honestly, I think it doesn't...
C: How to convert my first column containing duplicate names to the row names by wuzj42 • 0
Obviously, in R duplicate 'row.names' are not allowed. How could R identify your rows when they h...
C: bbmap.sh: line 352 /random number/ Killed by genomax ♦ 78k
Did you try the command above (which will create a reference on the fly and then map)?
C: How to convert my first column containing duplicate names to the row names by Asaf ♦ 7.0k
You have duplicated gene names. How comes?
C: Edited Title: Finding differential sequence characteristics between two groups o by Malcolm.Cook • 1.1k
Hi. Not sure I can help further. If you are able to fully respond to my original "Answer" to yo...
C: Low Complexity region determination using SEG by jaqx008 • 70
Thank you. I have been able to execute the command using segmasker. again, thanks.

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1052 users visited in the last hour