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What is common source of DNA- methylation raw data read files?

dna-methylation written 5 days ago by ak259369 • 0 • updated 2 days ago by Charles Warden ♦ 5.2k

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218

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Given two sets of nucleotide n-mers, how can I learn sets of 'motifs' which are present in one and not the other?

sequencing tf dna-methylation written 9 months ago by mk • 20

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DNA methylation analysis with RnBeads: start analysis from Beta-values

dna-methylation rnbeads written 2.3 years ago by nick • 70 • updated 2.3 years ago by andrew.j.skelton73 ♦ 5.3k

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Tcga Illumina Methylation Combining 27K And 450K

dna-methylation rna-seq written 2.5 years ago by Hamid • 10

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4.0k

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Transforming Beta values to M values

dna-methylation written 3.8 years ago by ChIP • 480 • updated 3.8 years ago by Devon Ryan ♦ 84k

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1.5k

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Linking SNPs to DNA methylation calls

dna-methylation snp written 4.0 years ago by Dataminer • 2.5k • updated 4.0 years ago by Sean Davis ♦ 25k

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1.1k

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What all informatics approaches are available to compare DNA methylation across species

comparison dna-methylation cross-species written 4.0 years ago by Saad Khan • 310

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665

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SNPs to DNA methylation and identification of significant variants

bioinformatics snps dna-methylation artciles written 4.0 years ago by ChIP • 480

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Recent Replies

C: RSEM with ERCC spike-ins formatting issues, ERCC sequences never make it into th by brian.capaldo • 0
It does not, it doesn't even include ERCC chromosomes in the .chrlist. RSEM doesn't even through ...
C: question about calling peak by macs2 by ch8316f5eyu • 0
Can you see the image I upload? The images show the peaks where IP and input both are enriched. T...
C: question about calling peak by macs2 by ch8316f5eyu • 0
I mean the good peak is that the IP sample has enrichment and input hasn't enrichment. In the two...
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I think you do not need a database. A promoter is always upstream of the first exon. When you do ...
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>what's the best way to stay informed about latest developments in genomic analysis tools? Fo...
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Hello hannes, I know these recommendation and I fully support the opinion not to use things like...
C: Illegal Division by zero by sicat.paolo20 • 20
Hi thanks to your help and the author's help (He got back to me! :D). You guys helped me what was...
C: RSEM with ERCC spike-ins formatting issues, ERCC sequences never make it into th by grant.hovhannisyan • 1.1k
Can you check if RSEM output has records for example to this gene_id GERCC_00157? I suspect that ...
C: question about calling peak by macs2 by goodez • 260
> I found the result of macs2 is not perfect and I want to know why. I don't understand what ...
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Hi, I added the line continuations for the command to look better, OP's original command was all...
A: How To Remove The Same Sequences In The Fasta Files? by ferroao • 0
in R: library(seqinr) #when you dont use attributes to name sequences fasnoa<-se...
C: Genomic coordinates from traditional HGVS variants by hannes • 0
Unfortunately, VEP also doesn't seem to understand the deprecated nomenclature that uses IVS# for...

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