dna-methylation Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: dna-methylation • reset

or Classic search

votes

answers

159

views

answers

Given two sets of nucleotide n-mers, how can I learn sets of 'motifs' which are present in one and not the other?

sequencing tf dna-methylation written 5 months ago by mattkarikomi • 10

vote

answer

1.1k

views

answer

DNA methylation analysis with RnBeads: start analysis from Beta-values

dna-methylation rnbeads written 23 months ago by nick • 70 • updated 23 months ago by andrew.j.skelton73 ♦ 4.8k

vote

answers

953

views

answers

Tcga Illumina Methylation Combining 27K And 450K

dna-methylation rna-seq written 2.1 years ago by Hamid • 10

votes

answer

3.5k

views

answer

Transforming Beta values to M values

dna-methylation written 3.5 years ago by ChIP • 480 • updated 3.5 years ago by Devon Ryan ♦ 79k

votes

answer

1.4k

views

answer

Linking SNPs to DNA methylation calls

dna-methylation snp written 3.6 years ago by Dataminer • 2.5k • updated 3.6 years ago by Sean Davis ♦ 24k

votes

answers

1.0k

views

answers

What all informatics approaches are available to compare DNA methylation across species

comparison dna-methylation cross-species written 3.6 years ago by Saad Khan • 310

votes

answers

630

views

answers

SNPs to DNA methylation and identification of significant variants

bioinformatics snps dna-methylation artciles written 3.7 years ago by ChIP • 480

Recent Votes

Recent Locations • All »

University of Macau, 1 minute ago
Japan, 2 minutes ago

Recent Awards • All »

Popular Question to grant.hovhannisyan • 780
Teacher to Devon Ryan ♦ 79k
Scholar to Devon Ryan ♦ 79k
Autobiographer to Ryan Swan • 0
Scholar to cpad0112 • 5.2k
Popular Question to mkaushal • 70

Recent Replies

C: Normalization amplicon data using mean depth and coverage by Kevin Blighe ♦ 19k
Working with the data should not be difficult, if not just a little unconventional. To help other...
C: Large data set visualisation by Kevin Blighe ♦ 19k
Can you give a sample of the data that you've got? What about CIRCOS? - here's a simple example s...
A: stringtie merged gtf doesn't give any gene expression columns by Kevin Blighe ♦ 19k
Please take a look at my previous answer here: https://www.biostars.org/p/292200/ Both my answer...
C: Example of processed RNASeq datasets by Kevin Blighe ♦ 19k
Well, perhaps we can do this here. In which cancer are you particularly interested? I am now plan...
C: How to get million target snps info(ie. chromosome, location) in a easy way? by xiaohuichen03 • 0
Hi, Thank you for your advice. When searching on a file of IDs, should the command line be $ grep...
C: Retrieving individual clusters from RNA-seq hierarchical clustering in R by Kevin Blighe ♦ 19k
Yes, that's generally the result of using Ward's linkage, but there's not exactly a right or wron...
C: Build a HISAT2 index of hg 19 by genomax ♦ 47k
At the index build step, unfortunately yes, since I don't think there is any way for the program ...
A: Build a HISAT2 index of hg 19 by mlemusfuentes • 0
you say that all working was lost?, delete those *.ht2 would be like starting over...
C: Bowtie2 align error by Bastien Hervé • 1.0k
If OP really have 128GB of RAM, he can align every genome he wants with bowtie2. It's a memory p...
A: getting a combination of all predicted genes by Alex Reynolds ♦ 23k
Union with `bedops -u` and perhaps filter the unioned set by overlap with `bedmap --range` or `be...
A: How to get million target snps info(ie. chromosome, location) in a easy way? by Alex Reynolds ♦ 23k
One way to do this is via the command line. You could download SNP annotations via `wget`. For ex...
C: RNA secondary structure - Feature extraction by cschu181 • 1.0k
Ok, please pull the code from github again. I have modified that you can run it on a bracket stri...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 943 users visited in the last hour