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Removing Illumina Single End PCR Primers and TruSeq Adapters
adapter removal dna-seq primer truseq fastqc written 1 day ago by serpalma.v • 10 • updated 1 day ago by genomax ♦ 49k
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controls for amplicon data - Which one to use and how?
amplicon dna-seq control written 3.2 years ago by Aurelie MLB • 290 • updated 2 days ago by Biostar ♦♦ 20
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News: Are you new to NGS and don't know where to start? - 'Introduction to NGS Data Analysis' course in Berlin
news dna-seq training ngs rna-seq written 9 days ago by David Langenberger ♦ 8.1k • updated 9 days ago by Lars • 550
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Extracting genotypes and filtering from a VCF file containing multiple exomes of families
vcf filter exome dna-seq genotype written 23 days ago by gradstudentNew • 10 • updated 23 days ago by Pierre Lindenbaum ♦ 108k
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Peak calling with MACS for paired end DNase-seq data
macs2 paired-end dna-seq bwa written 6 weeks ago by Bioinformatist Newbie • 220 • updated 6 weeks ago by igor ♦ 6.2k
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News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
ncbi news mapping ngs rna-seq dna-seq written 2.7 years ago by rtliu • 2.0k • updated 6 weeks ago by f.hashemigorji • 0
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant calling news dna-seq strand ngs rare disease written 3 months ago by Genomics • 70
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How to do NGS Analysis of a Particular Gene?
gene dna-seq snp written 10 weeks ago by user5212 • 0 • updated 9 weeks ago by finswimmer ♦ 2.8k
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GC Bias Correction
gc dna-seq written 10 weeks ago by finswimmer ♦ 2.8k
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News: 2nd Berlin Summer School in NGS Data Analysis 2018
news dna-seq ngs workshop rna-seq written 3 months ago by David Langenberger ♦ 8.1k • updated 3 months ago by Adele Feuerstein • 460
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genemark-es gene-finding with reference and annotation
assembly gene prediction dna-seq written 3 months ago by from the mountains • 40 • updated 3 months ago by lieven.sterck • 1.7k
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Is Paired End analysis possible with FASTQC?
paired-end dna-seq qc fastqc written 2.1 years ago by chefarov • 80 • updated 4 months ago by Stephane Plaisance • 360
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Is it possible to check whether a sample is progeny of the other two samples from exome sequenced data?
exome ngs dna-seq snp written 4 months ago by bioinforesearchquestions • 140 • updated 4 months ago by Noushin N • 520
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heterozygosity during variant calling in a non-model organism such as Bubalus Bubalis
next-gen dna-seq snp sequencing written 4 months ago by prasundutta87 • 170
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Median coverage from BAM file
dna-seq coverage written 5 months ago by rmf • 270 • updated 5 months ago by Alex Reynolds ♦ 24k
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Mutations and copy number variations from DNA-Seq
cna dna-seq snp cnv sequencing written 5 months ago by ciemanek • 70 • updated 5 months ago by Amitm • 1.5k
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Dealing with multiple read groups, from BWA to sorted .bam
dna-seq sequence written 6 months ago by jamiedm • 0
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282
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Tool for Pathway Analysis on SKAT results
skat exome dna-seq pathway analysis written 6 months ago by anp375 • 140
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Integrated DNA and RNA sequences in expression analysis
dna-seq rna-seq written 6 months ago by bwczech • 0 • updated 6 months ago by ori • 50
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News: Upcoming Hands-On NGS Data Analysis Workshops 2018
dna-seq news mapping rna-seq quality control workshop written 6 months ago by David Langenberger ♦ 8.1k
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Filtering variants in case-control DNA-seq study
genome dna-seq filtering written 7 months ago by YanO • 120
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DNA-seq and RNA-seq bam from TCGA for a single sample
dna-seq one sample rna-seq bam written 7 months ago by subhajit06 • 110
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News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
rna-seq news ngs strand ngs umi dna-seq written 7 months ago by Genomics • 70 • updated 7 months ago by WouterDeCoster ♦ 29k
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Detecting junctions from reads spanning large indels
dna-seq sam written 8 months ago by Adrian Pelin • 2.1k • updated 8 months ago by Pierre Lindenbaum ♦ 108k
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is it possible to do alignment using only the reverse strand as single end ?
dna-seq alignment bismark written 8 months ago by cjgunase • 20
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Meaning of BWA-MEM MAPQ values
alignment dna-seq bwa written 9 months ago by Isaac C. Joseph • 40 • updated 8 months ago by John ♦ 12k
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How to start analyzing next-generation DNA and RNA sequencing data?
next-gen dna-seq rna-seq written 8 months ago by Ben • 0 • updated 8 months ago by geocarvalho • 80
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Genotype (DNA-Seq) - Phenotype (RNA-Seq) database
dna-seq rna-seq written 2.7 years ago by Tobias • 140 • updated 8 months ago by Biostar ♦♦ 20
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Get FPKM across replicates without doing a differential expression
fpkm dna-seq rna-seq written 8 months ago by crouch.k • 10 • updated 8 months ago by Kevin Blighe ♦ 21k
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T Cell Repertoire Deep Sequencing
tcrsequencing dna-seq rna-seq written 11 months ago by shrutidesai0208 • 0 • updated 9 months ago by Biostar ♦♦ 20
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