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Recent Replies
-
C: Add filename to fasta headers of multiple fasta files inside loop by
st.ph.n • 1.2k
I've never had an issue with how it's formatted in the past since within a loop, each print line ...
-
C: Is it possible to annotate single genes by snpeff by
misbahabas • 30
Is it possible to annotate vcf which contain gene positions in different species by snpeff?
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C: Is it possible to annotate single genes by snpeff by
misbahabas • 30
I am trying to annotate vcf which contain position of genes instead of genome. after multiple seq...
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A: R: How to loop to extract all sequences within specific positions? by
megha.lal • 0
Hi, I'm facing a similar issue. Were you able to resolve the error?
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C: Add filename to fasta headers of multiple fasta files inside loop by
Matt Shirley ♦ 7.7k
You just need to add a '\n' at the end of the string using the write method.
-
C: HaplotypeCaller filter out variants covered only in one direction by
Dan Gaston ♦ 6.8k
You do want to calculate StrandBias, unless you are doing amplicon sequencing though you absolute...
-
C: Is it possible to annotate single genes by snpeff by
misbahabas • 30
MSA = Multiple Sequence Alignment. yes i want to annotate a vcf which got gene position instea...
-
A: Using multiple filters in BiomaRt's getSequence by
Emily_Ensembl ♦ 12k
Change your filter so that you're filtering by the Ensembl transcript ID: seq = getSequence(...
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A: Ideas about what can I do with the raw data of gene expression and miRNA of Gene by
gandrescabrera • 70
I will ask you some items: RNAseq data? Tissue specific? Genome version (hg19/hg38?) Bibliogra...
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C: Add filename to fasta headers of multiple fasta files inside loop by
st.ph.n • 1.2k
I don't see why the file is appearing like you posted. I ran a test on this script, and it appear...
-
C: weird insert size post trimming by
Gabriel R. • 2.0k
because the reads with less than 126 bp are found there.
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C: Samtools error in novoBreak " [main_samview] region "chrY:13119970-13120970" spe by
ATPoint • 710
The reference fasta uses only the numbers to name the chromosomes, so 1,2,3 instead of chr1, chr2...
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