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Genomics • 70
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WouterDeCoster ♦ 32k
Recent Votes
- A: Working Principle of Ancestral Sequence Reconstruction (ASR)
- How To Compute The Significance Of The Overlap Of The Size Of The Intersection Of Two Gene Sets.
- A: toil stats under-reporting memory usage?
- C: toil stats under-reporting memory usage?
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Recent Replies
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C: Working Principle of Ancestral Sequence Reconstruction (ASR) by
johnnytam100 • 40
Thanks for the comment! So do you mean although sometimes the result approximate to picking the m...
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A: How To Compute The Significance Of The Overlap Of The Size Of The Intersection O by
Vasei • 20
You can use resamplin (sometimes called permutation test) in this case. Assuming your gene list i...
-
A: Working Principle of Ancestral Sequence Reconstruction (ASR) by
Brice Sarver • 2.5k
You're working with an alignment here, i.e., an inference of homology. As a result, there will be...
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C: How to remove batch effects when i have different organs? by
jyshiningsoul • 0
Thank you for your reply. In my experimental design, I want to test whether the phylogenetic tree...
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A: Cuffmerge and cuffdiff error by
Philipp Bayer ♦ 5.7k
What's in your assemblies.txt? I have a hunch that your original RNASeq alignments never finished...
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A: is there a faster way to download large sequencing data from NCBI? by
Philipp Bayer ♦ 5.7k
I've made very good experiences with ascp instead of regular FTP The NCBI book will tell you whe...
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C: how to find the target sequence for protein modeling? by
karthic • 90
There are so many sequences (proteins), which do not have a structure (experimental/predicted). ...
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C: Where to find a valid GTF file for stringtie asssembly? by
Vijay Lakhujani ♦ 3.1k
> The .gff file you downloaded doesn't describe gene annotations. Yes , exactly! > You do...
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C: toil stats under-reporting memory usage? by
ionox0 • 180
https://github.com/DataBiosphere/toil/pull/2425
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A: toil stats under-reporting memory usage? by
ionox0 • 180
I haven't tracked this down fully, but it seems like this line: tag_str += reportMemory(t, o...
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A: Convert colorspace fastq to basespace fastq by
h.mon ♦ 20k
First, do you really need to work with those Solid reads? It is a defunct platform, with not much...
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C: Could I delete the unzipped installation folder after building a package? by
h.mon ♦ 20k
It depends, you didn't even say if you are running the program from the installation folder, or i...
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