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8
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1
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4.4k
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5 follow
1
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Nucleotide Substitution Matrix With Iupac Nucleotide Ambiguity Codes
alignment dna written 5.5 years ago by tommivat • 240 • updated 16 days ago by Biostar ♦♦ 20
1
vote
1
answer
182
views
1
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what is the next step of my NGS data?
assembly ngs dna written 5 weeks ago by jjeangoh • 0 • updated 5 weeks ago by toralmanvar • 650
31
votes
4
answers
5.8k
views
7 follow
4
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Finding Orf And Corresponding Strand In A Dna Sequence
codegolf orf code dna written 7.7 years ago by Eric Normandeau ♦ 9.9k • updated 5 weeks ago by zx8754 ♦ 5.5k
0
votes
0
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107
views
0
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Choosing tool for DNA secondary structure stem-loop prediction
software secondary stem loop dna written 5 weeks ago by Anand Rao • 160
1
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0
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668
views
0
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Showing the original subject when running BLAST
command read alignment blast dna written 2.7 years ago by kdsilva • 0 • updated 7 weeks ago by RamRS ♦ 19k
4
votes
1
answer
181
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6 follow
1
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GLM to predict what SNP influences DNA-methylation
R methylation glm snp dna written 7 weeks ago by svenbioinf • 10 • updated 7 weeks ago by Kevin Blighe ♦ 31k
1
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0
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298
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Job: Bioinformatics developer / Software engineer
dna job software engineer developer bioinformatics written 9 weeks ago by mark • 0
4
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2
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5.7k
views
6 follow
2
answers
Beta-values, M-values and thresholds on effect size
450k illumina methylation microarray dna written 4.2 years ago by gbayon • 160 • updated 11 weeks ago by tarek_2050 • 0
1
vote
1
answer
207
views
1
answer
Python Programmatically obtaining the corresponding wildtype DNA sequence of a RefSeq Protein Identifier (e.g WP_016693432.1)
database refseq mapping transcript dna written 3 months ago by ahir29 • 0 • updated 3 months ago by genomax ♦ 58k
0
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1
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221
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1
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Job: Faculty Position in Systems Immunology at Benaroya Research Institute (BRI), in Seattle, WA
genome dna job rna-seq biomarkers written 3 months ago by jobs • 0 • updated 3 months ago by bradmonalex • 0
2
votes
1
answer
149
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1
answer
Are there any de novo assemblers which can handle (either) transcriptomic or genomic reads?
assembly rna dna written 3 months ago by maxwhjohn1988 • 40 • updated 3 months ago by Damian Kao ♦ 15k
0
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0
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164
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0
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Tutorial: In the cloud - Guide to running VerifyBamID to estimate DNA sample contamination
sequencing tutorial sequence cloud dna written 3 months ago by corlinp • 0
0
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0
answers
329
views
0
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Gff to genbank - feature is missing
gff3 augustus dna genbank bioinformatics written 5 months ago by rororo • 0 • updated 3 months ago by Biostar ♦♦ 20
0
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0
answers
174
views
0
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Alignment using secondary and tertiary features of DNA to make similarity matrix
R alignment rna biopython dna written 3 months ago by goonerrn • 0 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
177
views
0
answers
DNA i-motif sequence
sequence dna written 3 months ago by nahal75bagheri • 0
1
vote
0
answers
151
views
0
answers
How to find motif enrichment with IUPAC DNA fragment?
motif dna written 3 months ago by Shicheng Guo • 7.0k
0
votes
1
answer
528
views
1
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Correlation between gene expression and methylation
tcga gene expression methylation dna written 4 months ago by tujuchuanli • 20 • updated 4 months ago by pbpanigrahi • 180
3
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0
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245
views
6 follow
0
answers
appropriate script for DNA alignment
alignment dna written 4 months ago by Sam • 80
0
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0
answers
178
views
0
answers
What is the definition of "multiply aligned" sequences compared to multiple aligned sequence
sequence alignment dna written 4 months ago by beausoleilmo • 190
0
votes
1
answer
196
views
1
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DNA minor groove width for individual nucleotides?
dna written 4 months ago by whelp • 0 • updated 4 months ago by Kevin Blighe ♦ 31k
7
votes
1
answer
322
views
1
answer
get identical number of read1 and read2 aligned
fastq dna written 5 months ago by oghzzang • 20
3
votes
1
answer
272
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6 follow
1
answer
Finding restriction sites when the gene is on the negative strand
rna strand dna written 5 months ago by chahat_u • 70 • updated 5 months ago by Anima Mundi • 2.4k
0
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1
answer
320
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1
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Trying to Identify larger indels from NGS data, FASTQ format
rad-seq fasta ngs fastq dna written 6 months ago by alice_pieplow • 0 • updated 6 months ago by Kevin Blighe ♦ 31k
0
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0
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190
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0
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Get DNA sequence from NCBI database, having a bunch of information about the entry
ncbi ncbiftp extractdna dna written 6 months ago by orelsmail • 0
1
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0
answers
172
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0
answers
Get pages of DNA from ncbi
ncbi dna written 6 months ago by orelsmail • 0
0
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0
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186
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0
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Multiple global sequence alignment of paired end reads
assembly paired-end alignment tool dna written 6 months ago by mhkt19 • 0
2
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1
answer
308
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1
answer
Forum: Theory v Reality
protein forum variation polymorphism dna written 6 months ago by urema • 0
6
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1
answer
307
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1
answer
Look for similar DNA sequences to a given sequence in the NCBI database
ncbi similar tool dna written 6 months ago by erans995 • 0
0
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0
answers
197
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0
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Tool for generating Physicochemical properties from sequence of RNA/DNA
mrna physicochemical properties sequence dna written 6 months ago by Saad Khan • 310
0
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270
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0
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blastn report apparently not showing all of the alignments, probably re-adjusting parameters, which option can control that?
ngs alignment blast blastn dna written 6 months ago by prishly • 0
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