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Sources for DNA accessibility data for certain Orgnisms
encode dnase-seq atac-seq written 5 weeks ago by kimkes250 • updated 5 weeks ago by ATpoint44k
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coverage of dnase-seq narrow peak file of genome
bed dnase-seq coverage written 7 weeks ago by kimkes250 • updated 7 weeks ago by ATpoint44k
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Finding Dnase-seq results for HEK293 cell type
dnase-seq hek293 written 3 months ago by kimkes250 • updated 3 months ago by ATpoint44k
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NarrowPeak format -Peak field
bed chip-seq dnase-seq written 3 months ago by kimkes250 • updated 3 months ago by ATpoint44k
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how many columns does F-seq need in the bed file
f-seq callpeaks chip-seq peakcalling dnase-seq written 3.6 years ago by Shaway10 • updated 3.5 years ago by spacemorrissey240
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Alternative to PWMtools
gene chip-seq dnase-seq written 4.0 years ago by rbronste370
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Annotating a PWM
pwm dnase-seq written 4.0 years ago by rbronste370
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CENTIPEDE DNase-seq analysis - ylist question
R dnase-seq centipede written 4.0 years ago by rbronste370 • updated 4.0 years ago by ddiez1.9k
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bwtool Alternative tool
chip-seq dnase-seq bwtool written 4.0 years ago by rbronste370
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Overlap CNV with ENCODE DNAse-seq peaks
dnase encode dnase-seq cnv written 4.6 years ago by QVINTVS_FABIVS_MAXIMVS2.4k • updated 4.6 years ago by Sinji3.0k
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Threshold for calling DNAse-seq peaks ON or OFF
cutoff peaks dnase-seq roadmap written 4.8 years ago by Bioinformatist Newbie250 • updated 4.8 years ago by Alex Reynolds31k
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Tutorial: Determine if a transcription factor is bound with CENTIPEDE
transcription factor tutorial chip-seq dnase-seq written 5.6 years ago by Kamil2.0k • updated 5.1 years ago by wujiaqi0
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How to identify Accessible genes from DNase-seq?
homer dna accessibility dnase-seq written 5.1 years ago by Bioinformatist Newbie250 • updated 5.1 years ago by jotan1.2k
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Counting read spacing efficiently
alignment parallel dnase-seq sequencing written 6.0 years ago by André Rendeiro50 • updated 6.0 years ago by Alex Reynolds31k
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