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How do I get all sequences for one specific domain from Hmmer vs Pfam output that contains the results of many domains ?
domain hmmer pfam written 3 months ago by emilyc • 10 • updated 3 months ago by Mensur Dlakic • 6.9k
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how to calculate pfamscan.pl results alignement coverage?
domain alignment protein coverage pfamscan written 4 months ago by aiswaryabioinfo • 20
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1
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412
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How to choose between --cut_ga, --cut_tc, and --cut_nc in hmmsearch? (hmmer)
domain hmm alignment protein written 6 months ago by O.rka • 210 • updated 6 months ago by Mensur Dlakic • 6.9k
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2
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676
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Visualizing MEME results togeather with a Phylogenetic Tree
phylogeny domain meme protein motif written 2.5 years ago by venuraherath • 20 • updated 9 months ago by letunic • 10
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30k
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70 follow
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How To Create Mutation Diagram In R Or In Any Tools?
domain R mutation written 7.8 years ago by henryvuong • 790 • updated 10 months ago by zx8754 ♦ 9.7k
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301
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Automatically retrieving interpro domain information ( to combine with phylogentic tree) - PhyloXML
phylogeny domain phyloxml interpro written 18 months ago by venurah • 20 • updated 13 months ago by Damianos P. Melidis • 30
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2
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346
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protein domain start-stop codons database
domain codon vep database written 15 months ago by cocchi.e89 • 110 • updated 15 months ago by genomax ♦ 91k
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1
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242
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custom database in HH-suite
domain hh-suite orthogroup homology hmm written 17 months ago by yp19 • 60 • updated 17 months ago by Joe ♦ 18k
1
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1
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405
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Get protein domain information from nucleotide sequence of assembled contigs?
domain contig proteins hmmpred interprp written 17 months ago by DanielC • 130 • updated 17 months ago by lieven.sterck ♦ 8.7k
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3
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high-throughput domain discovery
domain proteins written 2.7 years ago by blur • 140 • updated 18 months ago by martinsteinegger • 30
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349
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super secondary structures versus CATH architecture
domain architecture super secondart structure cath written 22 months ago by movahedi.marziyeh • 0
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Where can I download ALL pfam flat-file annotations?
domain pfam annotations flat-files written 23 months ago by O.rka • 210 • updated 22 months ago by Biostar ♦♦ 20
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Identification of Domains altered by alternative splicing
asta-funk domain alternative splicing written 2.8 years ago by mail2steff • 60 • updated 23 months ago by vitorlimac2 • 0
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Conserved Domain Batch Retrieval
domain plant protein motif written 6.6 years ago by bran10.sp • 0 • updated 23 months ago by Min Dai • 160
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How do I go about comparing domains
genome domain help comparing gene written 23 months ago by jamie_cooper2341 • 0
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1
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Access to HMMER software
domain alignment protein hmmaer written 4.7 years ago by seta • 1.4k • updated 2.1 years ago by RamRS ♦ 30k
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1
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518
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1
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Tools to construct gene model
domain intron gene model exon written 2.2 years ago by MAPK • 1.6k • updated 2.2 years ago by regmkbl ♦ 66k
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618
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get domains of proteins
domain protein written 2.3 years ago by emanismail.92 • 0
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736
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 2.4 years ago by Solowars • 50
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3
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3
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Constructing Phylogenetic Tree Based On Pathogenicity Genes Of A Fungus
phylogeny domain phylogenetics genbank genome written 7.6 years ago by Natasya Azwin • 10 • updated 2.6 years ago by Biostar ♦♦ 20
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2
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Extracting domain list for proteins Using UniProt.ws in R
domain R bioconductor uniprot packag written 4.8 years ago by Farhad • 10 • updated 2.9 years ago by brennanpincardiff • 200
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1
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1.6k
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5 follow
1
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Find all domains in a list of proteins
domain protein written 3.0 years ago by dugong • 0 • updated 3.0 years ago by Emily_Ensembl ♦ 21k
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1
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1.6k
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1
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motif and domain finder
domain alignment motif tool written 3.2 years ago by misbahabas • 60 • updated 3.2 years ago by Sej Modha ♦ 4.7k
3
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1
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6 follow
1
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How do I get data that maps the protein domain of the Interpro database to the hg19 genome coordinates?
domain interpro written 3.3 years ago by eric.kai0918 • 10 • updated 3.3 years ago by Pierre Lindenbaum ♦ 131k
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PFAM, KEGG enrichment for non model organism
domain enrichment non model organism written 3.6 years ago by mjp • 30
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How can i find the sequence of human domain ?
domain database alignment written 3.5 years ago by arta • 590
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Multiple Sequence Alignement
domain sequence alignment virus written 3.5 years ago by pradeep13march • 0
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1
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Suggestions for Visualization of Domain Architecture Evolution, Through Phylogenetic Tree
domain phylogenetic tree visualization written 4.0 years ago by hanchen1996 • 10 • updated 3.5 years ago by Biostar ♦♦ 20
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How often are domains single- versus multi-exon?
domain python biomart exon ensembl written 3.8 years ago by ellan • 0
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861
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Find potential biological significance of a k-mer?
genome domain sequence kmer dna written 4.0 years ago by jolespin • 130
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