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How do I get all sequences for one specific domain from Hmmer vs Pfam output that contains the results of many domains ?
domain hmmer pfam written 5 days ago by emilyc • 10 • updated 4 days ago by Mensur Dlakic • 5.8k
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how to calculate pfamscan.pl results alignement coverage?
domain alignment protein coverage pfamscan written 29 days ago by aiswaryabioinfo • 20
3
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1
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212
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1
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How to choose between --cut_ga, --cut_tc, and --cut_nc in hmmsearch? (hmmer)
domain hmm alignment protein written 3 months ago by O.rka • 180 • updated 3 months ago by Mensur Dlakic • 5.8k
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2
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593
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2
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Visualizing MEME results togeather with a Phylogenetic Tree
phylogeny domain meme protein motif written 2.2 years ago by venuraherath • 20 • updated 5 months ago by letunic • 10
101
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9
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69 follow
9
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How To Create Mutation Diagram In R Or In Any Tools?
domain R mutation written 7.5 years ago by henryvuong • 780 • updated 7 months ago by zx8754 ♦ 9.3k
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259
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Automatically retrieving interpro domain information ( to combine with phylogentic tree) - PhyloXML
phylogeny domain phyloxml interpro written 14 months ago by venurah • 20 • updated 9 months ago by Damianos P. Melidis • 10
2
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2
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310
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2
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protein domain start-stop codons database
domain codon vep database written 12 months ago by cocchi.e89 • 80 • updated 12 months ago by genomax ♦ 85k
2
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1
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204
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custom database in HH-suite
domain hh-suite orthogroup homology hmm written 13 months ago by yp19 • 50 • updated 13 months ago by Joe ♦ 17k
1
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1
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368
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1
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Get protein domain information from nucleotide sequence of assembled contigs?
domain contig proteins hmmpred interprp written 14 months ago by DanielC • 120 • updated 14 months ago by lieven.sterck ♦ 7.9k
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3
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3
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high-throughput domain discovery
domain proteins written 2.4 years ago by blur • 120 • updated 14 months ago by martinsteinegger • 30
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322
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super secondary structures versus CATH architecture
domain architecture super secondart structure cath written 19 months ago by movahedi.marziyeh • 0
3
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Where can I download ALL pfam flat-file annotations?
domain pfam annotations flat-files written 19 months ago by O.rka • 180 • updated 19 months ago by Biostar ♦♦ 20
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1
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Identification of Domains altered by alternative splicing
asta-funk domain alternative splicing written 2.5 years ago by mail2steff • 60 • updated 19 months ago by vitorlimac2 • 0
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2
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Conserved Domain Batch Retrieval
domain plant protein motif written 6.3 years ago by bran10.sp • 0 • updated 19 months ago by Minstein • 140
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376
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How do I go about comparing domains
genome domain help comparing gene written 20 months ago by jamie_cooper2341 • 0
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1
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1.1k
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1
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Access to HMMER software
domain alignment protein hmmaer written 4.4 years ago by seta • 1.3k • updated 21 months ago by RamRS ♦ 27k
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1
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479
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1
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Tools to construct gene model
domain intron gene model exon written 23 months ago by MAPK • 1.5k • updated 23 months ago by Kevin Blighe ♦ 61k
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568
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get domains of proteins
domain protein written 24 months ago by emanismail.92 • 0
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697
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Best way to identify proteins within a family?
domain orthologs oma homology hmmer written 2.1 years ago by Solowars • 50
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3
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3
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Constructing Phylogenetic Tree Based On Pathogenicity Genes Of A Fungus
phylogeny domain phylogenetics genbank genome written 7.3 years ago by Natasya Azwin • 10 • updated 2.3 years ago by Biostar ♦♦ 20
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2
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2
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Extracting domain list for proteins Using UniProt.ws in R
domain R bioconductor uniprot packag written 4.5 years ago by Farhad • 10 • updated 2.6 years ago by brennanpincardiff • 200
5
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1
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1.4k
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5 follow
1
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Find all domains in a list of proteins
domain protein written 2.7 years ago by dugong • 0 • updated 2.7 years ago by Emily_Ensembl ♦ 21k
0
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1
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1.4k
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1
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motif and domain finder
domain alignment motif tool written 2.9 years ago by misbahabas • 60 • updated 2.9 years ago by Sej Modha ♦ 4.7k
3
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1
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1.1k
views
6 follow
1
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How do I get data that maps the protein domain of the Interpro database to the hg19 genome coordinates?
domain interpro written 3.0 years ago by eric.kai0918 • 10 • updated 3.0 years ago by Pierre Lindenbaum ♦ 129k
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2
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PFAM, KEGG enrichment for non model organism
domain enrichment non model organism written 3.3 years ago by mjp • 10
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How can i find the sequence of human domain ?
domain database alignment written 3.2 years ago by arta • 580
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0
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Multiple Sequence Alignement
domain sequence alignment virus written 3.2 years ago by pradeep13march • 0
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Suggestions for Visualization of Domain Architecture Evolution, Through Phylogenetic Tree
domain phylogenetic tree visualization written 3.7 years ago by hanchen1996 • 10 • updated 3.2 years ago by Biostar ♦♦ 20
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How often are domains single- versus multi-exon?
domain python biomart exon ensembl written 3.5 years ago by ellan • 0
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831
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0
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Find potential biological significance of a k-mer?
genome domain sequence kmer dna written 3.7 years ago by jolespin • 130
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