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<prev • 364 results • page 1 of 13 • next >
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How to analyze DEGs other than makeContrasts method for time-point RNASeq experiment?
degs rna-seq edger written 16 hours ago by anikng • 0
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52
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'NA's under Gene Names & Gene Symbols : Differential expression Analysis of TCGA data using edgeR
gene tcga differential expression edger written 1 day ago by fawazfebin • 20
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1
answer
72
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1
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RNA-seq differential analysis with N batches and a technical replicate in each batch
differential analysis deseq2 rna-seq edger written 12 days ago by jonathanli6022 • 0 • updated 8 days ago by Gordon Smyth • 1.4k
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66
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RNA-Seq Time series analysis in EdgeR
R rna-seq edger written 13 days ago by josmantorres • 10
7
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1
answer
685
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1
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Differential analysis show different results with edgeR and in box plot with t-test
differential analysis R boxplot rna-seq edger written 10 months ago by newbie • 70 • updated 14 days ago by Biostar ♦♦ 20
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1
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110
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1
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Compensating for suspected tissue contamination in edgeR
rna-seq edger written 26 days ago by Frostbrunnsdalen • 0
4
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102
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EdgeR Warning message In estimateCommonDisp.
R rna-seq edger deg written 5 weeks ago by Dr.Animo • 10
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153
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Converting REFSeq IDs to Entrez IDs for KEGG analysis - "geneid of incorrect length"?
R deseq kegg edger rna-seq written 3 months ago by saw44 • 10 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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330
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1
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EdgeR analysis for DE genes with different time courses
R edger rna-seq written 11 weeks ago by ali.hakimzadeh • 0
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1
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1.6k
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5 follow
1
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Normalization methods for metagenomics WGS data (not 16S data)
normalization deseq2 edger written 2.8 years ago by David • 160 • updated 9 weeks ago by shengwei • 30
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2
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3.7k
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2
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sva + egdeR - differential expression analysis - RNA-seq data
sva rna-seq edger written 4.1 years ago by mrodrigues.fernanda • 40 • updated 9 weeks ago by Biostar ♦♦ 20
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159
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why the TPM value is not same?
R tpm normalizing edger rpkm written 10 weeks ago by star • 210 • updated 9 weeks ago by RamRS ♦ 25k
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201
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1
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Which counts to use for RNA-seq heatmap and PCA?
pca rna-seq edger heatmap written 10 weeks ago by Lucy • 40
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4
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30 follow
4
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How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental Biologist/non-bioinformatician
gene limma edger written 2.2 years ago by Mike • 1.5k • updated 11 weeks ago by ariel • 80
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1
answer
240
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1
answer
Calculating z-scores using edgeR's fitted values (output of glmQLFit)
R rna-seq edger written 12 weeks ago by n.anuragsharma • 20 • updated 12 weeks ago by Gordon Smyth • 1.4k
4
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1
answer
386
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1
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EdgeR for single cell differential expression analysis
single-cell edger differential expression written 3 months ago by kvshamsudheen • 30
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4
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295
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5 follow
4
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Interpretation of RNA seq pipeline in a paper
R rna-seq edger written 3 months ago by n.anuragsharma • 20 • updated 3 months ago by colin.kern • 810
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1
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129
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1
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edgeR pairwise comparison
deseq2 edger written 3 months ago by rykerklie7 • 0
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158
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Obtaining input matrix from Kallisto for later downstream analysis with Deseq2 or EdgeR.
deseq2 kallisto rna-seq edger written 3 months ago by obuhovadarina • 0
2
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1
answer
150
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1
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Finding DEGenes taking into account the DEG of a compared control condition
R sgrna limma rna-seq edger written 3 months ago by mcalleja • 90
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1
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201
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1
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Limma/edgeR or other for metagenomic (non-RNA) data?
metagenomics paired data edger voom written 3 months ago by gaio.transposon • 0 • updated 3 months ago by Fabio Marroni • 2.5k
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4.4k
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9 follow
2
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 21 months ago by sam.vanc70 • 30 • updated 3 months ago by simplitia • 30
4
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2
answers
152
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2
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Remove glmLRT rows under a certain pValue
pvalue R glm qlf edger written 4 months ago by williams.damon26 • 10 • updated 4 months ago by Gordon Smyth • 1.4k
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223
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Find most upregulated genes in one library?
bioinformatics expression rsubread rna-seq edger written 4 months ago by williams.damon26 • 10
12
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3
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411
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6 follow
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deseq2 or edgeR
deseq2 rna-seq edger written 5 months ago by yusuf • 40 • updated 5 months ago by Gordon Smyth • 1.4k
4
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2
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232
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2
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Calculate p-value for experiment group with replicates, while control group without replicates
R deseq2 rna-seq edger written 5 months ago by zhangdengwei • 50 • updated 5 months ago by Nicolas Rosewick ♦ 8.6k
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1
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1.2k
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5 follow
1
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DESeq2 (or EdgeR) Exploratory Analysis with no Replicates
deseq2 edger rna-seq written 9 months ago by gabriel.jabud • 30 • updated 5 months ago by Konstantinos Yeles • 100
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334
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EdgeR without replicate?
differential' edger corset rna-seq written 5 months ago by 1234anjalianjali1234 • 30
2
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280
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0
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edgeR negative bionomial error in without replicate data?
R rna-seq edger no-replicate written 5 months ago by 1234anjalianjali1234 • 30 • updated 5 months ago by ATpoint ♦ 29k
2
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2
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225
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2
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Extracting data from edgeR R package
R edger written 5 months ago by Sara • 90 • updated 5 months ago by zx8754 ♦ 9.0k
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