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<prev • 304 results • page 1 of 11 • next >
4
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1
answer
82
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1
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LogFC calculation in multiple comparisons
rna-seq edger deseq written 2 days ago by elb • 160 • updated 1 day ago by RamRS ♦ 21k
6
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1
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118
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1
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Differential analysis show different results with edgeR and in box plot with t-test
differential analysis R boxplot rna-seq edger written 2 days ago by newbie • 20
0
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1
answer
104
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1
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correlation between data
R ggplot correlation dataframe edger written 3 days ago by star • 140 • updated 2 days ago by Dinara • 0
2
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0
answers
60
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0
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On the practical use of estimateDisp function
rna-seq edger written 3 days ago by elb • 160 • updated 3 days ago by RamRS ♦ 21k
3
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0
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164
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0
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Differential Expression Help
rna-seq differential expression edger written 13 days ago by mlai2567 • 0 • updated 12 days ago by Biostar ♦♦ 20
2
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0
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97
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0
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filter data by normalization
R tcga rna-seq edger written 13 days ago by leandrogarcia20504 • 0 • updated 13 days ago by ATpoint ♦ 15k
1
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1
answer
118
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1
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Access edgeR test statistic
edger written 16 days ago by rrcutler • 110 • updated 16 days ago by Gordon Smyth • 750
0
votes
0
answers
218
views
0
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Experimental design RNAseq differential expression
rna-seq edger limma differential expression batch written 29 days ago by Pietro • 50 • updated 19 days ago by Biostar ♦♦ 20
0
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1
answer
745
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1
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Error while using EdgeR
edger written 13 months ago by KVC_bioinfo • 380 • updated 22 days ago by Gordon Smyth • 750
0
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0
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95
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0
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Question about sva + edgeR to identify differentially expressed genes
sva edger written 26 days ago by tujuchuanli • 40 • updated 26 days ago by ATpoint ♦ 15k
3
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2
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7.5k
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2
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Edger Logcpm Calculation
R edger written 5.2 years ago by koen.vdberge • 10 • updated 27 days ago by Gordon Smyth • 750
3
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1
answer
152
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1
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how do I properly use edgeR::scaleOffset to combine two targeted RNA-seq panels?
panel rna-seq edger written 29 days ago by glocke01 • 160
3
votes
1
answer
182
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6 follow
1
answer
DE analysis with edgeR and possibly batch effect
de analysis edger batch effect written 5 weeks ago by seta • 1.1k • updated 5 weeks ago by Devon Ryan ♦ 89k
3
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1
answer
167
views
1
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Error in differential analysis for samples with different time points
differential analysis R rna-seq edger written 5 weeks ago by Biologist • 150 • updated 5 weeks ago by h.mon ♦ 24k
0
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1
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349
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1
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How to extract normalized matrix after using calcNormFact function (with TMM method) ? edgeR
R edger rna-seq written 9 months ago by Katerina • 0 • updated 5 weeks ago by kristoffer.vittingseerup • 1.7k
0
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2
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175
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2
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Query about gene ontology analysis in edgeR vs GSEA
edger go written 6 weeks ago by elizabethR • 70
0
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1
answer
141
views
1
answer
eclip-seq: Using edgeR/DESeq2 for normalizing peaks of IP/Input of transcript level
clip-seq eclip-seq deseq2 edger written 7 weeks ago by gnilihzeux • 0
2
votes
1
answer
186
views
1
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Using featureCounts Output for DE analysis in edgeR
featurecounts rna-seq edger written 7 weeks ago by markm014 • 0 • updated 7 weeks ago by Friederike ♦ 3.6k
0
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0
answers
122
views
0
answers
DE analysis of multiple time points and conditions
nested esign design matrix interaction edger written 9 weeks ago by scheitelt • 0
10
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1
answer
293
views
7 follow
1
answer
edgeR make contrast
contrasts rna-seq edger written 9 weeks ago by Bnf83 • 130 • updated 9 weeks ago by i.sudbery ♦ 4.3k
8
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1
answer
443
views
6 follow
1
answer
error while using edgeR( Negative counts not allowed)
R rna-seq edger written 9 weeks ago by deeksha3696 • 10 • updated 9 weeks ago by zx8754 ♦ 7.1k
2
votes
1
answer
215
views
1
answer
error while making a DEGList object on R using edgeR package
rna-seq edger written 10 weeks ago by saumya.sharma1509 • 0 • updated 10 weeks ago by WouterDeCoster ♦ 38k
6
votes
1
answer
154
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1
answer
RNA-Seq: X samples and X batches
batch effects deseq2 rna-seq edger written 10 weeks ago by Behram Radmanesh • 10 • updated 10 weeks ago by WouterDeCoster ♦ 38k
9
votes
3
answers
996
views
6 follow
3
answers
Differential expression: replicates in one condition, no replicates in the other
rna-seq edger sequencing written 20 months ago by IP • 530 • updated 12 weeks ago by Gordon Smyth • 750
7
votes
3
answers
300
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3
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edgeR batch effect
bactch effect R design rna-seq edger written 3 months ago by NielQC • 10 • updated 3 months ago by Charles Warden ♦ 6.6k
18
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2
answers
742
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11 follow
2
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How to see if adjusting batch effect in RNA-seq is working or not
removebatcheffect edger rna-seq batch effect written 3 months ago by iraia.munoa • 60 • updated 3 months ago by Charles Warden ♦ 6.6k
4
votes
1
answer
344
views
1
answer
RNAseq analysis: what comes first, filtering or normalization
R edger rna-seq written 3 months ago by Herbert • 0 • updated 3 months ago by h.mon ♦ 24k
3
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1
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287
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1
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Differential analysis with replicates using edgeR
differential analysis design matrix rna-seq edger written 4 months ago by Vasu • 320 • updated 3 months ago by Biostar ♦♦ 20
0
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1
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242
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1
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A question about how the kegga function or KEGG analysis in general determines significance.
kegga rna-seq kegg edger limma written 4 months ago by brett.vanderwerff • 20
0
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0
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290
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0
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Different options tryed with DiffBind and did not know what final result believe
R diffbind deseq2 chip-seq edger written 4 months ago by iraia.munoa • 60
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