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<prev • 407 results • page 1 of 14 • next >
2
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106
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1
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RNASeq - How to compare the expression of a single gene across batches
batch correction rna-seq edger written 6 days ago by oakhamwolf • 20 • updated 6 days ago by i.sudbery ♦ 9.4k
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2
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2.3k
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2
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Filtering lowly expressed genes - edgeR
R filtering rna-seq edger written 2.7 years ago by noeD • 90 • updated 12 days ago by CL • 0
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0
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93
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0
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Benchmarking DESeq / EdgeR / LIMMA vs Lasso vs RF
lasso limma deseq edger rf written 14 days ago by fr • 140
0
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0
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89
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0
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Error in R: DGEList(counts, group) : 'lib.size' must be numeric
R edger written 17 days ago by lizzyloo99 • 0 • updated 17 days ago by h.mon ♦ 31k
1
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140
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5 follow
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Problems in differential expression analysis with edgeR
R rna-seq edger written 26 days ago by thancy • 10
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0
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134
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What is the most appropriate design matrix for paired samples and two disease states?
rna-seq edger written 5 weeks ago by M.ap • 0 • updated 28 days ago by Biostar ♦♦ 20
0
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162
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0
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EdgeR - comparison between subjects is not working
rna-seq edger written 29 days ago by microbiotaiota • 20
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2
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1.7k
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5 follow
2
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EdgeR for single cell differential expression analysis
single-cell edger differential expression written 11 months ago by kvshamsudheen • 40 • updated 4 weeks ago by ATpoint ♦ 40k
0
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142
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0
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How to Identify Housekeeping genes from gene expression matrix and normalize the data
normalization housekeeping genes limma edger R written 5 weeks ago by bioyas • 0
3
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221
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1
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Ambiguous results of RNA-Seq data using stringtie with edgeR
stringtie rna-seq edger written 3 months ago by ilovesuperheroes1993 • 0 • updated 5 weeks ago by swbarnes2 ♦ 8.9k
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0
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17 follow
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Tutorial: Basic normalization, batch correction and visualization of RNA-seq data
batch correction tutorial ma-plot rna-seq edger written 5 weeks ago by ATpoint ♦ 40k
5
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0
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163
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0
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Normalisation of paired samples in edgeR
rna-seq edger written 5 weeks ago by microbiotaiota • 20
1
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1
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205
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1
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Best normalization method to use with ChIP-seq counts
normalization featurecounts chip-seq counts edger written 7 weeks ago by science_lizard • 0 • updated 7 weeks ago by ATpoint ♦ 40k
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127
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When would you add your own library size in edgeR?
edger rna-seq written 7 weeks ago by microbiotaiota • 20
0
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1
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161
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1
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R design on 2-way interaction not displaying all options
modeling design limma edger deseq written 8 weeks ago by fr • 140
0
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0
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108
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0
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Bulk RNAseq MACS Sort Quality Contamination
batch correction rna-seq edger written 8 weeks ago by jordan15 • 0
2
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1
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175
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1
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EdgeR matrix design and comparisons for paired samples
rna-seq edger written 10 weeks ago by silas008 • 130 • updated 10 weeks ago by h.mon ♦ 31k
0
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1
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1.3k
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1
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How to highlight DE genes in plotMD ?
volcanoplot mirnaseq plotmd edger written 2.5 years ago by Björn • 50 • updated 10 weeks ago by valizad2 • 0
4
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1
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249
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1
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EdgeR and contrasts: How to compare with a group not in the model
R makecontrasts model.matrix rna-seq edger written 10 weeks ago by 13530213 • 10
0
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0
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117
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0
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Paired Testing in EdgeR: Addressing patient specific response (in only one patient)
paired_testing rna-seq edger R written 10 weeks ago by accio • 0
5
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1
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219
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1
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Which is the best approach to get DEG across one condition, in a three-factor design experiment?
rna-seq edger written 10 weeks ago by antonioggsousa • 1.5k • updated 10 weeks ago by Devon Ryan ♦ 97k
0
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1
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362
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1
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Differential Gene Expression with Replicates for some of the samples
deseq2 rna-seq edger limma written 11 weeks ago by rezaeir75 • 10 • updated 11 weeks ago by Ali T. A. • 30
5
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0
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207
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0
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Too many RNAseq samples. What to do?
deseq2 rna-seq edger written 11 weeks ago by english.server • 210
3
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1
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196
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1
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Can transcripts per million be fed into edgeR and voom?
R rna-seq edger limma written 12 weeks ago by joetaylor268 • 10 • updated 12 weeks ago by h.mon ♦ 31k
0
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2
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251
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2
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RSEM isoform.results outputs for edgeR
tximport rsem edger written 3 months ago by weichengz • 0
4
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1
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302
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1
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Do I have batch effect?
rna-seq edger batch effect written 4 months ago by avino • 10 • updated 4 months ago by i.sudbery ♦ 9.4k
0
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1
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162
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1
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nearestTSS function in edgeR for differential methylation analysis
rrbs nearesttss limma rna-seq edger written 4 months ago by osa.zuta • 0
5
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2
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648
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5 follow
2
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Why 'filterByExpr' does not eliminate low read counts from the expression data?
filterbyexpr degs edger rna-seq written 5 months ago by svp • 240 • updated 5 months ago by Gordon Smyth • 2.0k
1
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1
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150
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1
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How to add dots to the PCA (in addition to labels)?
rna-seq edger written 5 months ago by tanya_fiskur • 40 • updated 5 months ago by Kevin Blighe ♦ 66k
0
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1
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354
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1
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RNAseq analysis with edgeR-interaction terms and comparison within and between groups
rna-seq edger written 7 months ago by erwagner2 • 0 • updated 5 months ago by RamRS ♦ 30k
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