Showing: edgerreset
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Making a table of RNA seq results
R rna-seq edger written 10 days ago by tw61720 • updated 9 days ago by zx87545.6k
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How to make a gene expression correlation graph?
R rna-seq edger written 12 days ago by unawaz10 • updated 12 days ago by h.mon21k
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No replicates in 1 group, which idea is the best to apply?
no replicates deseq2 rna-seq edger written 23 days ago by Batu110 • updated 23 days ago by EagleEye5.9k
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Should I remove samples after normalization of miRNA seq read counts ?
rna-seq edger mirnas written 9 months ago by Björn30 • updated 28 days ago by Biostar ♦♦ 20
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How to make cluster from gene read count?
R deseq2 rna-seq clustering edger written 5 weeks ago by ahmad mousavi150 • updated 29 days ago by Chirag Parsania1.2k
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How to create design matrix for confounder (here sunlight) in edgeR ?
rnaseq edger written 6 weeks ago by Björn30 • updated 6 weeks ago by b.nota5.3k
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Gene set enrichment analysis with edgeR output
R edger genesetenrichment gsea rna-seq written 7 weeks ago by Biologist90 • updated 7 weeks ago by h.mon21k
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.1 years ago by ando.kelli30 • updated 7 weeks ago by egtabilin0
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Does FDR value change based Fold change cutoff?
R differential expression rna-seq edger statistics written 4 months ago by Biologist90 • updated 7 weeks ago by RamRS19k
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Fit GLM using part of the data
scrna-seq glm edger written 8 weeks ago by rasmus.agren0 • updated 7 weeks ago by Kevin Blighe32k
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How to create PCA plot and heatmaps using only significant genes in edgeR ?
R pca edger heatmaps written 4 months ago by Björn30 • updated 9 weeks ago by zx87545.6k
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RNA-seq unbalanced batch effect correction
R rna-seq edger batch effect written 10 weeks ago by sckinta480 • updated 10 weeks ago by Devon Ryan86k
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problem in matrix generation after abundance estimation by RSEM?
rsem edger written 11 weeks ago by majeedaasim20 • updated 10 weeks ago by h.mon21k
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News: sharing BiocWorkshops 2018
deseq2 rna-seq news limma glimma edger written 11 weeks ago by Bogdan680 • updated 11 weeks ago by Pierre Lindenbaum114k
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Why DE genes are not among highly variable genes between groups
variance edger mirna written 6 months ago by Björn30 • updated 11 weeks ago by Biostar ♦♦ 20
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making matrix model for samples with one wild type and 4 different results
R edger rna-seq deg voom written 3 months ago by moru_all0 • updated 3 months ago by Marks40
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DESeq2 question: how to identify genes expressed only in one condition
R deseq2 rna-seq edger written 3 months ago by EVWS20 • updated 3 months ago by Kevin Blighe32k
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