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Normalization methods for metagenomics WGS data (not 16S data)
normalization deseq2 edger written 2.8 years ago by David160 • updated 9 weeks ago by shengwei30
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sva + egdeR - differential expression analysis - RNA-seq data
sva rna-seq edger written 4.1 years ago by mrodrigues.fernanda40 • updated 9 weeks ago by Biostar ♦♦ 20
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why the TPM value is not same?
R tpm normalizing edger rpkm written 10 weeks ago by star210 • updated 9 weeks ago by RamRS25k
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Calculating z-scores using edgeR's fitted values (output of glmQLFit)
R rna-seq edger written 12 weeks ago by n.anuragsharma20 • updated 12 weeks ago by Gordon Smyth1.4k
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Interpretation of RNA seq pipeline in a paper
R rna-seq edger written 3 months ago by n.anuragsharma20 • updated 3 months ago by colin.kern810
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edgeR pairwise comparison
deseq2 edger written 3 months ago by rykerklie70
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 21 months ago by sam.vanc7030 • updated 3 months ago by simplitia30
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Remove glmLRT rows under a certain pValue
pvalue R glm qlf edger written 4 months ago by williams.damon2610 • updated 4 months ago by Gordon Smyth1.4k
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deseq2 or edgeR
deseq2 rna-seq edger written 5 months ago by yusuf40 • updated 5 months ago by Gordon Smyth1.4k
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DESeq2 (or EdgeR) Exploratory Analysis with no Replicates
deseq2 edger rna-seq written 9 months ago by gabriel.jabud30 • updated 5 months ago by Konstantinos Yeles100
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edgeR negative bionomial error in without replicate data?
R rna-seq edger no-replicate written 5 months ago by 1234anjalianjali123430 • updated 5 months ago by ATpoint29k
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Extracting data from edgeR R package
R edger written 5 months ago by Sara90 • updated 5 months ago by zx87549.0k
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