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<prev • 264 results • page 1 of 9 • next >
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Does FDR value change based Fold change cutoff?
R differential expression rna-seq edger statistics written 3 months ago by Biologist • 70 • updated 1 day ago by RamRS ♦ 17k
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Error with combining samples into matrix using abundance_estimates_to_matrix.pl
matrix de edger rna-seq written 2.6 years ago by nikelle.petrillo • 80 • updated 1 day ago by RamRS ♦ 17k
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Fit GLM using part of the data
scrna-seq glm edger written 4 days ago by rasmus.agren • 0 • updated 2 days ago by Kevin Blighe ♦ 28k
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80
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Problem with low count removal in edgeR ?
edger differential expression mirna written 4 days ago by Björn • 30
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49
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design matrix for time point comparision [1 treatment] in time course RNA Seq - EdgeR
next-gen rna-seq edger limma written 6 days ago by thindmarsmission • 0 • updated 6 days ago by WouterDeCoster ♦ 32k
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How to create PCA plot and heatmaps using only significant genes in edgeR ?
R pca edger heatmaps written 10 weeks ago by Björn • 30 • updated 11 days ago by zx8754 ♦ 5.0k
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edgeR Factorial DE Design
factorial edger differential expression written 11 days ago by hamindigoblue • 0
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edgeR DE; choosing right coefficient from design matrix with many covariates
rna-seq edger written 14 days ago by Cece • 0
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108
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Error while doing EdgeR fro miRNA Seq analysis
mirnaseq tool edger written 16 days ago by nivya.james2016 • 0
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148
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RNA-seq unbalanced batch effect correction
R rna-seq edger batch effect written 18 days ago by sckinta • 460 • updated 18 days ago by Devon Ryan ♦ 84k
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problem in matrix generation after abundance estimation by RSEM?
rsem edger written 27 days ago by majeedaasim • 20 • updated 24 days ago by h.mon ♦ 19k
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143
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5 follow
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News: sharing BiocWorkshops 2018
deseq2 rna-seq news limma glimma edger written 28 days ago by Bogdan • 640 • updated 28 days ago by Pierre Lindenbaum ♦ 112k
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285
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Why DE genes are not among highly variable genes between groups
variance edger mirna written 4 months ago by Björn • 30 • updated 28 days ago by Biostar ♦♦ 20
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Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
differential analysis cheminformatics limma edger written 4 weeks ago by Alonzo • 10 • updated 4 weeks ago by Devon Ryan ♦ 84k
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making matrix model for samples with one wild type and 4 different results
R edger rna-seq deg voom written 6 weeks ago by moru_all • 0 • updated 5 weeks ago by Marks • 40
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DESeq2 question: how to identify genes expressed only in one condition
R deseq2 rna-seq edger written 7 weeks ago by EVWS • 20 • updated 7 weeks ago by Kevin Blighe ♦ 28k
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How to extract normalized matrix after using calcNormFact function (with TMM method) ? edgeR
R edger rna-seq written 9 weeks ago by Katerina • 0 • updated 9 weeks ago by h.mon ♦ 19k
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Heatmap: edgeR counts and DEG
rna-seq edger heatmap written 10 weeks ago by RiNG • 10
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331
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Differential analysis between two cell lines
differential analysis R rna-seq edger written 10 weeks ago by Biologist • 70
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155
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RNA-seq edgeR normalization
normalization rna-seq edger tmm written 12 weeks ago by GuriGuri1565 • 10 • updated 12 weeks ago by Devon Ryan ♦ 84k
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How to link "miRNA gene quantification" and "clinical- Patient" data retrieved from TCGA
contrast tcga mirnaseq edger written 3 months ago by Björn • 30
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EdgeR generic design matrix
rna-seq edger written 3 months ago by rfenouil • 0 • updated 3 months ago by Devon Ryan ♦ 84k
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1
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377
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edgeR - normalized counts from multiple datasets
normalization rna-seq edger written 3 months ago by teabonng • 10 • updated 3 months ago by 1561775911 • 0
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Differential expression: High variability inter-samples
deseq2 limma edger written 3 months ago by VHahaut • 1.1k
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edger model matrix design of linear model
design matrix edger differential expression written 3 months ago by teabonng • 10
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edgeR RPKM Values
R bioconductor edger written 5 months ago by gtasource • 20 • updated 3 months ago by Biostar ♦♦ 20
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142
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Adding completely two different cell population at the end time point in GLM (Generalized Linear Model)?
time-course glm edger written 3 months ago by mmchowdhury9 • 0
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178
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How to combine differentially expressed miRNAs to calculate molecular signature score in edgeR?
molecular signature de edger mirna written 3 months ago by Björn • 30 • updated 3 months ago by Kevin Blighe ♦ 28k
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 3 months ago by sam.vanc70 • 10 • updated 3 months ago by Devon Ryan ♦ 84k
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Why not investigate non-DE miRNAs ?
differentially expressed de rna-seq edger mirna written 3 months ago by Björn • 30
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