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<prev • 175 results • page 1 of 6 • next >
4
votes
2
answers
152
views
2
answers
topGo Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
R topgo rna-seq edger written 8 days ago by Ric • 140
3
votes
1
answer
130
views
1
answer
topGO allGenes argument
R topgo rna-seq edger written 8 days ago by Ric • 140 • updated 8 days ago by e.rempel • 440
0
votes
0
answers
125
views
0
answers
normalization of POL2 ChIP-seq for the calculation of POL2 Pausing Ratios
deseq2 chip-seq edger written 28 days ago by Bogdan • 260
0
votes
1
answer
172
views
1
answer
edgeR RNA-seq Results Across Conditions
rna-seq edger written 6 weeks ago by asyndeton17 • 10 • updated 6 weeks ago by shoujun.gu • 220
2
votes
1
answer
185
views
1
answer
DE analysis with two samples in multiple samples
edger rna-seq written 6 weeks ago by Satyajeet Khare • 1.0k
0
votes
0
answers
168
views
0
answers
edgeR : How to test differential exon usage on case/control study across all time points when accounting for the within subject variability?
model time-course model.matrix edger lrt written 8 weeks ago by sarin.heikki.v • 10 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
231
views
1
answer
linear regression on EPICmethylation data
R methylation edger written 7 weeks ago by catherine12243 • 90 • updated 6 weeks ago by theobroma22 • 930
1
vote
0
answers
186
views
0
answers
Differential expression: replicates in one condition, no replicates in the other
rna-seq edger sequencing written 7 weeks ago by IP • 350
0
votes
0
answers
152
views
0
answers
diffSplice: Error in exon.genes[o, , drop = FALSE] : incorrect number of dimensions
exon diffsplice edger voom written 8 weeks ago by sarin.heikki.v • 10 • updated 8 weeks ago by WouterDeCoster ♦ 21k
2
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0
answers
232
views
0
answers
Does read counts for ATAC-seq differential detection make sense?
atac-seq edger differential accessibility written 9 weeks ago by datascientist28 • 290
1
vote
2
answers
692
views
2
answers
Getting FPKM value from edgeR software
edger error fpkm value written 11 months ago by seta • 920 • updated 10 weeks ago by Biostar ♦♦ 20
6
votes
2
answers
335
views
8 follow
2
answers
GO enrichment analysis with human ENSEMBL ids
R ensembl go enrichment edger rna-seq written 4 months ago by zhang.jianhai • 0 • updated 11 weeks ago by Nan Xiao • 0
15
votes
1
answer
346
views
7 follow
1
answer
How to perform edgeR based on serial paired samples? (model.matrix design)
R edger rna-seq written 3 months ago by CandiceChuDVM • 1.3k
2
votes
1
answer
564
views
1
answer
Where to download older version of R packages in Bioconductor?
rna-seq edger 3.12.0 written 16 months ago by xieshaojun0621 • 80 • updated 3 months ago by venu • 4.3k
12
votes
2
answers
382
views
5 follow
2
answers
Install DESeq2 and edgeR with Anaconda
deseq2 anaconda edger written 3 months ago by salamandra • 70 • updated 3 months ago by Sean Davis ♦ 23k
0
votes
0
answers
135
views
0
answers
question about two factor makeContrasts
R edger linear model written 3 months ago by mforde84 • 900
1
vote
0
answers
206
views
0
answers
Stupid edgeR question
rna-seq edger written 3 months ago by s1469060 • 10 • updated 3 months ago by h.mon ♦ 8.7k
2
votes
1
answer
214
views
1
answer
RNAseq - matrix design in DESeq2 or edgeR
deseq2 rna-seq edger matrix design written 4 months ago by xioli2013 • 0
23
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2
answers
1.4k
views
2
answers
Tool: DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
limma deseq2 tool edger rna-seq written 14 months ago by WouterDeCoster ♦ 21k
3
votes
3
answers
196
views
3
answers
differential expression of miRNA
edger written 4 months ago by kamyasingh90 • 10 • updated 4 months ago by Whoknows • 590
1
vote
0
answers
335
views
0
answers
Interpreting unusual-looking mean-variance plot from EdgeR
glm rna-seq edger written 4 months ago by Ravi Patel • 0
5
votes
1
answer
319
views
1
answer
Different results with edgeR when adding gene symbols
biomart rna-seq edger written 4 months ago by urmi208 • 30 • updated 4 months ago by MMa • 210
0
votes
1
answer
300
views
1
answer
Duplicate gene names in count matrix from GTF file that can't be parsed to edgeR
genome count matrix rna-seq edger dge written 6 months ago by Chloe • 0 • updated 4 months ago by ytian • 0
2
votes
0
answers
304
views
0
answers
edgeR error: arguments imply differing number of rows: 4211, 4216
edger error rna-seq written 5 months ago by zh.khodadadi • 0
0
votes
0
answers
271
views
0
answers
Normalization methods for metagenomics WGS data (not 16S data)
normalization deseq2 edger written 5 months ago by David • 60
2
votes
0
answers
190
views
0
answers
Confusing edgeR result for reads without count
count matrix differential expression edger written 5 months ago by polag03 • 0
0
votes
0
answers
241
views
0
answers
RNA-seq unbalanced batch effect correction
batch effect limma edger rna-seq written 5 months ago by endikavarela • 0
6
votes
1
answer
306
views
1
answer
How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
rna-seq differential expression edger written 6 months ago by gabriel.rosser • 90
13
votes
4
answers
449
views
6 follow
4
answers
How to define a non differentially expressed gene?
deseq2 edger deg non-deg rna-seq written 6 months ago by xieshaojun0621 • 80 • updated 5 months ago by Michael Love • 1.4k
5
votes
1
answer
376
views
1
answer
How is logFC and p-value estimated (for volcano plots)?
R foldchange edger written 5 months ago by lrutter0306 • 0 • updated 5 months ago by Carlo Yague • 3.2k
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