Showing: edgerreset
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edgeR batch effect
bactch effect R design rna-seq edger written 4 days ago by NielQC10 • updated 2 days ago by Charles Warden5.9k
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RNAseq analysis: what comes first, filtering or normalization
R edger rna-seq written 19 days ago by Herbert0 • updated 19 days ago by h.mon22k
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Differential analysis with replicates using edgeR
differential analysis design matrix rna-seq edger written 6 weeks ago by Bioinfo270 • updated 26 days ago by Biostar ♦♦ 20
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141
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EdgeR with Paired Sample Replicates
R edger rna-seq written 5 weeks ago by kmyers210 • updated 5 weeks ago by b.nota5.7k
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7
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5 follow
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Normalization for small non-coding RNA (piRNAs)
normalization deseq2 limma edger written 7 weeks ago by Konstantinos Yeles40 • updated 6 weeks ago by A. Domingues1.8k
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Making a table of RNA seq results
R rna-seq edger written 10 weeks ago by tw61720 • updated 10 weeks ago by zx87546.2k
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How to make a gene expression correlation graph?
R rna-seq edger written 10 weeks ago by unawaz40 • updated 10 weeks ago by h.mon22k
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No replicates in 1 group, which idea is the best to apply?
no replicates deseq2 rna-seq edger written 12 weeks ago by Batu110 • updated 12 weeks ago by EagleEye6.1k
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Should I remove samples after normalization of miRNA seq read counts ?
rna-seq edger mirnas written 11 months ago by Björn40 • updated 3 months ago by Biostar ♦♦ 20
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How to make cluster from gene read count?
R deseq2 rna-seq clustering edger written 3 months ago by ahmad mousavi350 • updated 3 months ago by Chirag Parsania1.3k
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How to create design matrix for confounder (here sunlight) in edgeR ?
rnaseq edger written 3 months ago by Björn40 • updated 3 months ago by b.nota5.7k
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8 follow
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Gene set enrichment analysis with edgeR output
R edger genesetenrichment gsea rna-seq written 3 months ago by Biologist110 • updated 3 months ago by h.mon22k
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TMM.normalized.FPKM vs .TMM.EXPR.matrix for populating SQL
trinity fpkm tpm sql edger written 2.3 years ago by ando.kelli40 • updated 3 months ago by egtabilin0
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554
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Does FDR value change based Fold change cutoff?
R differential expression rna-seq edger statistics written 7 months ago by Biologist110 • updated 3 months ago by RamRS20k
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Fit GLM using part of the data
scrna-seq glm edger written 3 months ago by rasmus.agren0 • updated 3 months ago by Kevin Blighe35k
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257
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