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<prev • 166 results • page 1 of 6 • next >
2
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128
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0
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Does read counts for ATAC-seq differential detection make sense?
atac-seq edger differential accessibility written 2 days ago by datascientist28 • 280
1
vote
2
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525
views
2
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Getting FPKM value from edgeR software
edger error fpkm value written 9 months ago by seta • 900 • updated 11 days ago by Biostar ♦♦ 20
6
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2
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245
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8 follow
2
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GO enrichment analysis with human ENSEMBL ids
R ensembl go enrichment edger rna-seq written 8 weeks ago by zhang.jianhai • 0 • updated 17 days ago by Nan Xiao • 0
15
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1
answer
257
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7 follow
1
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How to perform edgeR based on serial paired samples? (model.matrix design)
R edger rna-seq written 4 weeks ago by CandiceChuDVM • 1.2k
2
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1
answer
492
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1
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Where to download older version of R packages in Bioconductor?
rna-seq edger 3.12.0 written 14 months ago by xieshaojun0621 • 80 • updated 5 weeks ago by venu • 4.0k
10
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2
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195
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2
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Install DESeq2 and edgeR with Anaconda
deseq2 anaconda edger written 6 weeks ago by salamandra • 70 • updated 6 weeks ago by Sean Davis ♦ 23k
0
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112
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0
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question about two factor makeContrasts
R edger linear model written 6 weeks ago by mforde84 • 700
1
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0
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150
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0
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Stupid edgeR question
rna-seq edger written 7 weeks ago by s1469060 • 10 • updated 7 weeks ago by h.mon ♦ 7.3k
2
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1
answer
138
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1
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RNAseq - matrix design in DESeq2 or edgeR
deseq2 rna-seq edger matrix design written 8 weeks ago by xioli2013 • 0
22
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2
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1.2k
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2
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Tool: DEA.R: Command line script for differential expression analysis with R packages (DESeq2/edgeR/limma-voom)
limma deseq2 tool edger rna-seq written 12 months ago by WouterDeCoster ♦ 20k
3
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3
answers
133
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3
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differential expression of miRNA
edger written 8 weeks ago by kamyasingh90 • 10 • updated 8 weeks ago by Whoknows • 570
1
vote
0
answers
232
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0
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Interpreting unusual-looking mean-variance plot from EdgeR
glm rna-seq edger written 9 weeks ago by Ravi Patel • 0
5
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1
answer
242
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1
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Different results with edgeR when adding gene symbols
biomart rna-seq edger written 10 weeks ago by urmi208 • 30 • updated 10 weeks ago by MMa • 210
0
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1
answer
238
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1
answer
Duplicate gene names in count matrix from GTF file that can't be parsed to edgeR
genome count matrix rna-seq edger dge written 4 months ago by Chloe • 0 • updated 11 weeks ago by ytian • 0
2
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0
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231
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0
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edgeR error: arguments imply differing number of rows: 4211, 4216
edger error rna-seq written 12 weeks ago by zh.khodadadi • 0
0
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0
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193
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0
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Normalization methods for metagenomics WGS data (not 16S data)
normalization deseq2 edger written 12 weeks ago by David • 50
2
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0
answers
142
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0
answers
Confusing edgeR result for reads without count
count matrix differential expression edger written 12 weeks ago by polag03 • 0
0
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0
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185
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0
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RNA-seq unbalanced batch effect correction
batch effect limma edger rna-seq written 3 months ago by endikavarela • 0
6
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1
answer
245
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1
answer
How did the edgeR authors compute Figure 2 (genewise deviance statistics?)
rna-seq differential expression edger written 3 months ago by gabriel.rosser • 90
13
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4
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377
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6 follow
4
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How to define a non differentially expressed gene?
deseq2 edger deg non-deg rna-seq written 4 months ago by xieshaojun0621 • 80 • updated 3 months ago by Michael Love • 1.4k
5
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1
answer
223
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1
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How is logFC and p-value estimated (for volcano plots)?
R foldchange edger written 3 months ago by lrutter0306 • 0 • updated 3 months ago by Carlo Yague • 3.0k
1
vote
1
answer
225
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1
answer
Normalizing for RNA abundance across replicates from a time course
normalization rna abundance edger rsem rna-seq written 4 months ago by Chloe • 0 • updated 4 months ago by Jacob Warner • 370
3
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0
answers
246
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0
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EdgeR analysis p-value plateau formation
power samples size edger p-values written 4 months ago by Laura • 0
0
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2
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519
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2
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Please adivse me on differential expression analysis on the STAR/Stringtie output
count stringtie star differential expression edger written 5 months ago by seta • 900 • updated 4 months ago by dunhamcg • 0
3
votes
1
answer
178
views
1
answer
What does benchmark method exactly mean?
benchmark methods edger deg rna-seq written 4 months ago by natalia.fghf • 250 • updated 4 months ago by Macspider • 1.2k
0
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1
answer
651
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1
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TMM normalisation on a subtset of the data
normlization edger tmm written 18 months ago by tomasscheitel • 10 • updated 4 months ago by Biostar ♦♦ 20
0
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0
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156
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0
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edgeR estimateDisp provide error
R edger written 4 months ago by raveenpoudel • 0 • updated 4 months ago by genomax ♦ 31k
11
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3
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3.9k
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7 follow
3
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Chipseq Background Subtraction For Count-Based Differential Binding Methods?
chip-seq edger written 4.9 years ago by Ryan Thompson • 3.2k • updated 5 months ago by Biostar ♦♦ 20
0
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1
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266
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1
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How should I construct this contrast?
rna-seq edger written 6 months ago by carl.h • 10 • updated 6 months ago by mforde84 • 700
0
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0
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258
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0
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Looking at treatment effects with contrasts multiple groups
rna-seq edger written 6 months ago by carl.h • 10
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