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3
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1
answer
83
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1
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Design Matrix with EdgeR or DESeq2
deseq2 edger rna-seq written 1 day ago by reui879 • 10 • updated 1 day ago by i.sudbery ♦ 10k
1
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0
answers
64
views
0
answers
How do I work out which condition the genes are down-regulated in?
edger rna-seq glm written 3 days ago by microbiotaiota • 20
1
vote
1
answer
42
views
1
answer
Problems with readBismark2DGE when uploading data
bisulfite sequencing edger written 4 days ago by iraia.munoa • 100
0
votes
0
answers
78
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0
answers
How to compare all groups of RNA-Seq samples with each other in one go?
R rna-seq edger written 12 days ago by bio100 • 0
0
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0
answers
72
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0
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When to use plotMD() vs maPlot() vs plotSmear()?
visualization edger written 19 days ago by MLee • 0
0
votes
1
answer
171
views
1
answer
Diffbind3 dba.plotMA error
diffbind3 ma edger chip-seq written 24 days ago by alwhiteh • 0 • updated 22 days ago by Rory Stark • 900
1
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1
answer
139
views
1
answer
edgeR glmRT code error message
R gmlrt edger written 23 days ago by jimmy0958073736 • 0
0
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0
answers
140
views
0
answers
Unusual distribution of LogFC in EdgeR (Single cell)
edger differential expression rna-seq written 25 days ago by kvshamsudheen • 60
0
votes
1
answer
134
views
1
answer
Can be possible to analyze in multiple sample without replicated in edgeR
no-replicated multiple sample edger rna-seq written 4 weeks ago by jimmy0958073736 • 0
1
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2
answers
159
views
2
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Different results from MDS and PCA plots for DE analysis
deseq2 pca mds edger written 4 weeks ago by benjytan1488 • 0 • updated 4 weeks ago by Mensur Dlakic • 8.1k
0
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0
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102
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0
answers
Green monkey edgeR in GSEA analysis
gsea edger bio-conductor written 4 weeks ago by jimmy0958073736 • 0
0
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0
answers
224
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0
answers
Benchmarking DESeq / EdgeR / LIMMA vs Lasso vs RF
lasso limma deseq edger rf written 3 months ago by fr • 150 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
118
views
0
answers
edgeR Section 3.2.6 ANOVA example
anova rna-seq edger written 8 weeks ago by maynard • 0
5
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1
answer
143
views
1
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Is there a program to average read counts from technical replicates?
rna-seq edger written 8 weeks ago by microbiotaiota • 20
1
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0
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127
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0
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Best method for differential expressed genes between 3 environmental observations
R deseq2 rna-seq edger anova written 9 weeks ago by ecg1g15 • 10 • updated 8 weeks ago by Biostar ♦♦ 20
1
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0
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237
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0
answers
ComBat-seq adjustment of batch effects
sva batch effects rna-seq combat-seq edger written 9 weeks ago by chatterjee.arumoy • 20
0
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0
answers
136
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0
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Comparing differentially expressed genes post-DGE
gene edger rna-seq written 9 weeks ago by geo • 0
2
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1
answer
163
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1
answer
Comparison of comparisons with edgeR
gene expression rna-seq edger written 9 weeks ago by Cristina Zamora • 0 • updated 9 weeks ago by GenoMax ♦ 94k
6
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1
answer
163
views
1
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How important is filtering reads in EdgeR?
rna-seq edger written 10 weeks ago by M.ap • 0
7
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1
answer
1.4k
views
1
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Differential analysis show different results with edgeR and in box plot with t-test
differential analysis R boxplot rna-seq edger written 21 months ago by newbie • 90 • updated 10 weeks ago by harinisundareswaran • 0
8
votes
2
answers
181
views
2
answers
glmQLFTest coef for multiple comparisons
edger rna-seq written 10 weeks ago by silas008 • 140 • updated 10 weeks ago by Gordon Smyth • 2.1k
2
votes
1
answer
159
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1
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EdgeR exactTest help
R rna-seq differential expression edger written 10 weeks ago by jmor • 10 • updated 10 weeks ago by Gordon Smyth • 2.1k
0
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0
answers
148
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0
answers
Does anyone explain step by step how obtain Fc from Tmm normalizatio count???
diffbind edger written 11 weeks ago by g.persic1991 • 0
2
votes
1
answer
248
views
1
answer
RNASeq - How to compare the expression of a single gene across batches
batch correction rna-seq edger written 3 months ago by oakhamwolf • 20 • updated 3 months ago by i.sudbery ♦ 10k
2
votes
2
answers
2.7k
views
2
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Filtering lowly expressed genes - edgeR
R filtering rna-seq edger written 3.0 years ago by noeD • 90 • updated 3 months ago by CL • 0
1
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0
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259
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5 follow
0
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Problems in differential expression analysis with edgeR
R rna-seq edger written 3 months ago by thancy • 10
0
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0
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196
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0
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What is the most appropriate design matrix for paired samples and two disease states?
rna-seq edger written 4 months ago by M.ap • 0 • updated 3 months ago by Biostar ♦♦ 20
0
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0
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244
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0
answers
EdgeR - comparison between subjects is not working
rna-seq edger written 3 months ago by microbiotaiota • 20
7
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2
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2.3k
views
5 follow
2
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EdgeR for single cell differential expression analysis
single-cell edger differential expression written 14 months ago by kvshamsudheen • 60 • updated 4 months ago by ATpoint ♦ 44k
0
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0
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242
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0
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How to Identify Housekeeping genes from gene expression matrix and normalize the data
normalization housekeeping genes limma edger R written 4 months ago by bioyas • 0
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