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<prev • 245 results • page 1 of 9 • next >
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How to link "miRNA gene quantification" and "clinical- Patient" data retrieved from TCGA
contrast tcga mirnaseq edger written 9 hours ago by Björn • 20 • updated 2 hours ago by Kevin Blighe ♦ 21k
2
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1
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207
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1
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edgeR - normalized counts from multiple datasets
normalization rna-seq edger written 9 days ago by teabonng • 10 • updated 2 days ago by 1561775911 • 0
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93
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Differential expression: High variability inter-samples
deseq2 limma edger written 3 days ago by VHahaut • 1.1k
5
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1
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102
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7 follow
1
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edger model matrix design of linear model
design matrix edger differential expression written 4 days ago by teabonng • 10
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238
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5 follow
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edgeR RPKM Values
R bioconductor edger written 11 weeks ago by gtasource • 10 • updated 10 days ago by Biostar ♦♦ 20
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71
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Adding completely two different cell population at the end time point in GLM (Generalized Linear Model)?
time-course glm edger written 11 days ago by mmchowdhury9 • 0
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75
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1
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How to combine differentially expressed miRNAs to calculate molecular signature score in edgeR?
molecular signature de edger mirna written 18 days ago by Björn • 20 • updated 14 days ago by Kevin Blighe ♦ 21k
6
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1
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210
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1
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TMM or TPM normalized counts for visualization?
normalization tpm edger tmm written 20 days ago by sam.vanc70 • 10 • updated 18 days ago by Devon Ryan ♦ 80k
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103
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Why not investigate non-DE miRNAs ?
differentially expressed de rna-seq edger mirna written 19 days ago by Björn • 20
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1
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165
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1
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Normalization scaling factors: formula for applying them to raw counts
normalization deseq2 edger R written 24 days ago by sovrappensiero • 10
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97
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what is the function of prior.count in lcpm ?
lcpm rna-seq edger written 4 weeks ago by Björn • 20
2
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1
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87
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1
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Genes' length to get RPKM if features count is not used?
rpkm salmon rna-seq edger written 4 weeks ago by Sharon • 320 • updated 4 weeks ago by h.mon ♦ 15k
4
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2
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188
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2
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differential gene expression analysis
confounders edger limma rna-seq regression written 5 weeks ago by DataFanatic • 100
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111
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1
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How to create heatmaps only with DE genes in edgeR
pheatmap heatmap.2 de genes edger written 5 weeks ago by Björn • 20 • updated 5 weeks ago by Wietje • 150
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1
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118
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1
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Why DE genes are not among highly variable genes between groups
variance edger mirna written 6 weeks ago by Björn • 20 • updated 6 weeks ago by Devon Ryan ♦ 80k
1
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1
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337
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5 follow
1
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EdgeR (TMM): Samples with outlier but still show extremely low p-value and FDR
p-value trimmed mean of m-values edger written 5 months ago by Joe • 30 • updated 6 weeks ago by digrigor • 0
0
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1
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111
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1
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SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
sartools deseq2 rna-seq edger written 7 weeks ago by Farbod • 3.1k
5
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1
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187
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1
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how to consider batch effect in design matrix?
R design matrix edger differential expression written 7 weeks ago by star • 60
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146
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ATAC-seq differential accesibility using edgeR FDR vs Pval discrepencies
diifferential accesibility atac-seq edger written 7 weeks ago by achits • 20
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111
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how to give name of genes instead of unique ID created by "lcpm" ?
software error write.csv lcpm edger written 8 weeks ago by Björn • 20
5
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1
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198
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1
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Graphing specific gene expression data from DGEList
ggplot2 edger rna-seq dgelist written 9 weeks ago by MarjoryMollusc • 30
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102
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How to highlight DE genes in plotMD ?
volcanoplot mirnaseq plotmd edger written 9 weeks ago by Björn • 20
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131
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0
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Design matrix for edge R analysis?
R bioconductor limma edger statistics written 10 weeks ago by star • 60
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1
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246
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1
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count based or cpm based filtering for miRNA normalization when library size is small.
rnaseq mirna edger differential expression cpm written 3 months ago by Björn • 20
2
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1
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234
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1
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full rank designe matrix?
R bioconductor edger written 12 weeks ago by star • 60 • updated 12 weeks ago by genomax ♦ 49k
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134
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How to interpret summary(fit$df.prior) ?
plotqldisp edger mirna written 12 weeks ago by Björn • 20
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125
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Normalizing count data with several treatment dosages
normalization deseq2 qc rna-seq edger written 12 weeks ago by firatuyulur • 190
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1
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943
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5 follow
1
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How is logFC and p-value estimated (for volcano plots)?
R foldchange edger written 14 months ago by lrutter0306 • 10 • updated 12 weeks ago by jha.barkha8 • 0
0
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271
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0
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Error while using EdgeR
edger written 3 months ago by KVC_bioinfo • 310
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176
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1
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getting gene expression values using edgeR
rna-seq edger gene expression value written 3 months ago by yoongi1565 • 10 • updated 3 months ago by h.mon ♦ 15k
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