Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: efetch • reset
or   Classic search
<prev • 37 results • page 1 of 2 • next >
4
votes
1
answer
146
views
6 follow
1
answer
How to extract gene ids from NCBI gene names using either efetch or python ?
ncbi efetch entrez written 6 weeks ago by Vijay Lakhujani ♦ 4.1k • updated 6 weeks ago by genomax ♦ 68k
1
vote
1
answer
151
views
1
answer
Entrez-efetch error. What could be wrong with my efetch usage?
sra-download efetch etrez-direct rna-seq written 7 weeks ago by jaqx008 • 40
2
votes
3
answers
2.5k
views
3
answers
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 2.7 years ago by al-ash • 100 • updated 10 weeks ago by Biostar ♦♦ 20
11
votes
3
answers
2.4k
views
11 follow
3
answers
efetch error LWP::Protocol::https not installed
efetch written 20 months ago by traviata • 10 • updated 3 months ago by indexofire • 30
0
votes
1
answer
2.4k
views
1
answer
Obtaining sequence from Bioproject IDs using biopython gives unknown sequence
efetch eutilities elink biopython written 4.0 years ago by Prasad • 10 • updated 3 months ago by Biostar ♦♦ 20
0
votes
2
answers
954
views
2
answers
web efetch Json out put which is not a real json
python efetch json biopython pubmed written 21 months ago by Lilizine • 0 • updated 4 months ago by MatthewP • 110
1
vote
1
answer
283
views
1
answer
Different output fields from efetch
python efetch sequence written 6 months ago by Medhat ♦ 8.3k • updated 6 months ago by Pierre Lindenbaum ♦ 120k
0
votes
1
answer
230
views
1
answer
Which tool to use to get all citations of a pmid paper?
entrez eutils efetch written 8 months ago by Saad Khan • 330 • updated 8 months ago by h.mon ♦ 25k
2
votes
1
answer
299
views
1
answer
Strand not working in biopython efetch
efetch biopython strand written 8 months ago by tim.ivanov.92 • 10 • updated 8 months ago by jrj.healey ♦ 12k
2
votes
1
answer
672
views
1
answer
Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 13 months ago by auninsaw • 10
7
votes
3
answers
1.6k
views
3
answers
Retrieve GFF3 file from ncbi
gff3 ncbi efetch written 16 months ago by john • 70 • updated 14 months ago by ucpete • 20
5
votes
3
answers
720
views
3
answers
Cannot get efetch to download genome - what is wrong?
genome fasta efetch entrez written 14 months ago by BioBing • 100 • updated 14 months ago by h.mon ♦ 25k
0
votes
1
answer
571
views
1
answer
To get the name of the strains by searching assembly genome number GCF_
ncbi python efetch written 17 months ago by horsedog • 30 • updated 17 months ago by Joseph Hughes • 2.7k
3
votes
1
answer
1.1k
views
6 follow
1
answer
Fetching NCBI gene symbols from NCBI protein ids or GI identifiers
ncbi gene efetch entrez written 19 months ago by Vijay Lakhujani ♦ 4.1k • updated 19 months ago by Puli Chandramouli Reddy • 180
6
votes
1
answer
981
views
1
answer
How to download all sequences of a list of proteins for a particular organism
entrez direct efetch esearch written 20 months ago by traviata • 10 • updated 20 months ago by Kevin Blighe ♦ 43k
0
votes
1
answer
539
views
1
answer
Nested loops write in xml
python loop biopython efetch xml written 21 months ago by Lilizine • 0
1
vote
1
answer
954
views
1
answer
NCBI Entrez - efetch from PMC returns only abstract
efetch entrez pmc written 22 months ago by chaniart • 0 • updated 22 months ago by Jean-Karim Heriche ♦ 19k
10
votes
1
answer
2.5k
views
11 follow
1
answer
Download NCBI genomes using taxonomy id (taxid)
ncbi python efetch biopython written 2.2 years ago by David • 150 • updated 22 months ago by pedrorodrigues • 10
1
vote
0
answers
1.0k
views
0
answers
Entrez progammaticly: Direct efetch or epost + efetch
epost efetch entrez written 22 months ago by guedes.aureliano • 0
0
votes
1
answer
983
views
1
answer
URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 24 months ago by Pierre Lindenbaum ♦ 120k • updated 24 months ago by genomax ♦ 68k
2
votes
1
answer
694
views
1
answer
Mistakes in a bash script for adding taxid for nt database
taxid efetch nt database shell bash written 24 months ago by wyc661217 • 10 • updated 24 months ago by Istvan Albert ♦♦ 80k
0
votes
1
answer
984
views
1
answer
Transfer GI to taxID by efetch in a loop
software error taxid efetch gi written 2.0 years ago by wyc661217 • 10
0
votes
1
answer
1.1k
views
1
answer
Using efetch(biopython) to get the fasta file of an mRNA, as well as the exon locations
python efetch biopython entrez written 2.0 years ago by Jacob • 10 • updated 2.0 years ago by Ben • 50
7
votes
1
answer
708
views
1
answer
Extract Bibliographic Reference from GEO dataset using EFetch?
geo ncbi efetch written 2.1 years ago by Tom • 20 • updated 2.1 years ago by Santosh Anand ♦ 4.8k
3
votes
2
answers
3.3k
views
2
answers
Difference between NCBI Entrez formats (e.g., xml, docsum) for efetch
ncbi edirect efetch entrez command-line written 5.2 years ago by paulparsons • 130 • updated 2.2 years ago by DCGenomics • 310
0
votes
0
answers
793
views
0
answers
Getting DNA sequences by ncbi eutils for a specific assembly e.g.: hg19, hg38, GRCh37.p13 or GRCh38.p6?
ncbi eutils efetch dna sequences written 2.5 years ago by burcakotlu • 40
4
votes
2
answers
1.7k
views
2
answers
How can we download all TSA and WGS from NCBI Trace by taxon programmatically?
ncbi assembly trace efetch eutils written 2.6 years ago by Michael Dondrup ♦ 46k
0
votes
2
answers
1.6k
views
2
answers
How to retrieve any and all NCBI/GenBank accession numbers from a Taxonomy ID?
ncbi accession number efetch taxid bioinformatics written 2.7 years ago by yarmda • 0
0
votes
1
answer
748
views
1
answer
How to pass multiple seq_start and seq_stop statements to NCBI efetch
ncbi efetch sequence entrez written 2.8 years ago by massa.kassa.sc3na • 40
1
vote
1
answer
2.2k
views
1
answer
How to get correct Taxonomy UID from NCBI Taxonomy using Entrez E-utilities efetch?
ncbi efetch entrez biopython e-utilities written 2.9 years ago by JV • 380 • updated 2.9 years ago by piet • 1.7k
<prev • 37 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United States, 5 minutes ago
  • USA, 5 minutes ago
  • United Kingdom, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 976 users visited in the last hour