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<prev • 49 results • page 1 of 2 • next >
2
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72
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1
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bash find consecutive acc. no. & insert text
ncbi efetch bash acc.no. written 5 days ago by 6schulte • 20
2
votes
1
answer
159
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1
answer
downloading full genbank file using Entrez efetch
efetch full genbank entrez genbank written 27 days ago by seok1213neo • 0 • updated 27 days ago by vkkodali • 2.4k
5
votes
2
answers
227
views
2
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Joining multiple query keys in entrez Efetch
ncbi efetch entrez biopython written 10 weeks ago by timothy.kirkwood • 10
0
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0
answers
119
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0
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efetch results incomplete
ncbi e-utility efetch esearch entrez written 3 months ago by j.j.e.vanhooff • 0
1
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0
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170
views
0
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Retrieve all annotated features in a GenBank record
edirect efetch feature annotations genbank written 4 months ago by al-ash • 140
4
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3
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4.6k
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3
answers
Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 4.3 years ago by al-ash • 140
0
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1
answer
180
views
1
answer
how to download all reference files with ensembl and taxon ID?
ensembl efetch sequence esearch written 4 months ago by marongiu.luigi • 520
3
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2
answers
207
views
2
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Efetch extracting large fasta data from positon
efetch written 8 months ago by bengoaluoni • 0 • updated 8 months ago by Pierre Lindenbaum ♦ 133k
10
votes
4
answers
3.9k
views
6 follow
4
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Retrieve GFF3 file from ncbi
gff3 ncbi efetch written 3.0 years ago by john • 70 • updated 9 months ago by rohitsatyam102 • 220
1
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0
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229
views
0
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Get sequencing informations from NCBI with acc number
ncbi assembly efetch written 10 months ago by Chvatil • 50
5
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0
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321
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0
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Catching error "QueryKey value not found in link output" when fetching taxonomy from NCBI
ncbi R efetch bash error_handling written 11 months ago by Freddy • 20 • updated 11 months ago by Asaf ♦ 8.5k
0
votes
1
answer
303
views
1
answer
efetch sra suddenly stopping
ncbi sra fastq esearch efetch written 12 months ago by barry • 0 • updated 12 months ago by ATpoint ♦ 44k
2
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1
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439
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1
answer
Entrez Direct E-utilities on command line: efilter parameters for limiting efetch results
ncbi biosample efetch elink efilter written 14 months ago by sovrappensiero • 10 • updated 14 months ago by GenoMax ♦ 94k
1
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0
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294
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0
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NCBI e-utilities: timeout and restart
ncbi esummary esearch efetch e-utilities written 14 months ago by joe • 170
4
votes
1
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1.2k
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6 follow
1
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How to extract gene ids from NCBI gene names using either efetch or python ?
ncbi efetch entrez written 20 months ago by lakhujanivijay ♦ 5.3k • updated 20 months ago by GenoMax ♦ 94k
1
vote
1
answer
1.2k
views
1
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Entrez-efetch error. What could be wrong with my efetch usage?
sra-download efetch etrez-direct rna-seq written 21 months ago by jaqx008 • 70
13
votes
3
answers
4.4k
views
11 follow
3
answers
efetch error LWP::Protocol::https not installed
efetch written 3.3 years ago by traviata • 10 • updated 22 months ago by indexofire • 30
0
votes
1
answer
3.1k
views
1
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Obtaining sequence from Bioproject IDs using biopython gives unknown sequence
efetch eutilities elink biopython written 5.6 years ago by Prasad • 30 • updated 23 months ago by Biostar ♦♦ 20
2
votes
2
answers
1.9k
views
5 follow
2
answers
web efetch Json out put which is not a real json
python efetch json biopython pubmed written 3.4 years ago by Lilizine • 0 • updated 23 months ago by MatthewP • 840
1
vote
1
answer
722
views
1
answer
Different output fields from efetch
python efetch sequence written 2.1 years ago by Medhat ♦ 8.8k • updated 2.1 years ago by Pierre Lindenbaum ♦ 133k
0
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1
answer
592
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1
answer
Which tool to use to get all citations of a pmid paper?
entrez eutils efetch written 2.3 years ago by Saad Khan • 400 • updated 2.3 years ago by h.mon ♦ 32k
2
votes
1
answer
672
views
1
answer
Strand not working in biopython efetch
efetch biopython strand written 2.3 years ago by tim.ivanov.92 • 10 • updated 2.3 years ago by Joe ♦ 18k
2
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1
answer
2.3k
views
1
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Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 2.7 years ago by auninsaw • 10
5
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3
answers
1.6k
views
3
answers
Cannot get efetch to download genome - what is wrong?
genome fasta efetch entrez written 2.8 years ago by BioBing • 130 • updated 2.8 years ago by h.mon ♦ 32k
0
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1
answer
1.1k
views
1
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To get the name of the strains by searching assembly genome number GCF_
ncbi python efetch written 3.0 years ago by horsedog • 60 • updated 3.0 years ago by Joseph Hughes • 2.9k
3
votes
1
answer
1.7k
views
6 follow
1
answer
Fetching NCBI gene symbols from NCBI protein ids or GI identifiers
ncbi gene efetch entrez written 3.2 years ago by lakhujanivijay ♦ 5.3k • updated 3.2 years ago by Puli Chandramouli Reddy • 190
6
votes
1
answer
1.6k
views
1
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How to download all sequences of a list of proteins for a particular organism
entrez direct efetch esearch written 3.2 years ago by traviata • 10 • updated 3.2 years ago by Kevin Blighe ♦ 69k
0
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1
answer
819
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1
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Nested loops write in xml
python loop biopython efetch xml written 3.4 years ago by Lilizine • 0
1
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1
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1.6k
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1
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NCBI Entrez - efetch from PMC returns only abstract
efetch entrez pmc written 3.4 years ago by chaniart • 0 • updated 3.4 years ago by Jean-Karim Heriche ♦ 24k
10
votes
1
answer
4.2k
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11 follow
1
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Download NCBI genomes using taxonomy id (taxid)
ncbi python efetch biopython written 3.8 years ago by David • 180 • updated 3.4 years ago by pedrorodrigues • 10
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