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efetch results incomplete
ncbi e-utility efetch esearch entrez written 29 days ago by j.j.e.vanhooff • 0
1
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0
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116
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0
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Retrieve all annotated features in a GenBank record
edirect efetch feature annotations genbank written 6 weeks ago by al-ash • 140
4
votes
3
answers
4.3k
views
3
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Entrez direct E-utilities - "efetch" command to retrieve CDS with protein accessions does not work
entrez direct e-utilities cds efetch retrieve written 4.1 years ago by al-ash • 140
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1
answer
110
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1
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how to download all reference files with ensembl and taxon ID?
ensembl efetch sequence esearch written 7 weeks ago by marongiu.luigi • 520
3
votes
2
answers
160
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2
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Efetch extracting large fasta data from positon
efetch written 5 months ago by bengoaluoni • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 131k
10
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4
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3.5k
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6 follow
4
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Retrieve GFF3 file from ncbi
gff3 ncbi efetch written 2.7 years ago by john • 70 • updated 6 months ago by rohitsatyam102 • 200
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0
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196
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0
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Get sequencing informations from NCBI with acc number
ncbi assembly efetch written 7 months ago by Chvatil • 50
5
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0
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247
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0
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Catching error "QueryKey value not found in link output" when fetching taxonomy from NCBI
ncbi R efetch bash error_handling written 8 months ago by Freddy • 20 • updated 8 months ago by Asaf ♦ 8.4k
0
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1
answer
258
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1
answer
efetch sra suddenly stopping
ncbi sra fastq esearch efetch written 9 months ago by barry • 0 • updated 9 months ago by ATpoint ♦ 40k
2
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1
answer
353
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1
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Entrez Direct E-utilities on command line: efilter parameters for limiting efetch results
ncbi biosample efetch elink efilter written 11 months ago by sovrappensiero • 10 • updated 11 months ago by genomax ♦ 91k
1
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0
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244
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0
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NCBI e-utilities: timeout and restart
ncbi esummary esearch efetch e-utilities written 11 months ago by joe • 140
4
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1
answer
1.0k
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6 follow
1
answer
How to extract gene ids from NCBI gene names using either efetch or python ?
ncbi efetch entrez written 18 months ago by lakhujanivijay ♦ 5.3k • updated 18 months ago by genomax ♦ 91k
1
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1
answer
958
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1
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Entrez-efetch error. What could be wrong with my efetch usage?
sra-download efetch etrez-direct rna-seq written 18 months ago by jaqx008 • 70
13
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3
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4.1k
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11 follow
3
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efetch error LWP::Protocol::https not installed
efetch written 3.1 years ago by traviata • 10 • updated 20 months ago by indexofire • 30
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1
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3.0k
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1
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Obtaining sequence from Bioproject IDs using biopython gives unknown sequence
efetch eutilities elink biopython written 5.4 years ago by Prasad • 30 • updated 20 months ago by Biostar ♦♦ 20
2
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2
answers
1.8k
views
5 follow
2
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web efetch Json out put which is not a real json
python efetch json biopython pubmed written 3.1 years ago by Lilizine • 0 • updated 21 months ago by MatthewP • 780
1
vote
1
answer
664
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1
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Different output fields from efetch
python efetch sequence written 22 months ago by Medhat ♦ 8.8k • updated 22 months ago by Pierre Lindenbaum ♦ 131k
0
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1
answer
520
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1
answer
Which tool to use to get all citations of a pmid paper?
entrez eutils efetch written 2.1 years ago by Saad Khan • 400 • updated 2.1 years ago by h.mon ♦ 31k
2
votes
1
answer
627
views
1
answer
Strand not working in biopython efetch
efetch biopython strand written 2.1 years ago by tim.ivanov.92 • 10 • updated 2.1 years ago by Joe ♦ 18k
2
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1
answer
2.1k
views
1
answer
Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 2.5 years ago by auninsaw • 10
5
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3
answers
1.5k
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3
answers
Cannot get efetch to download genome - what is wrong?
genome fasta efetch entrez written 2.6 years ago by BioBing • 130 • updated 2.6 years ago by h.mon ♦ 31k
0
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1
answer
1.0k
views
1
answer
To get the name of the strains by searching assembly genome number GCF_
ncbi python efetch written 2.8 years ago by horsedog • 60 • updated 2.8 years ago by Joseph Hughes • 2.8k
3
votes
1
answer
1.6k
views
6 follow
1
answer
Fetching NCBI gene symbols from NCBI protein ids or GI identifiers
ncbi gene efetch entrez written 3.0 years ago by lakhujanivijay ♦ 5.3k • updated 3.0 years ago by Puli Chandramouli Reddy • 190
6
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1
answer
1.5k
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1
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How to download all sequences of a list of proteins for a particular organism
entrez direct efetch esearch written 3.0 years ago by traviata • 10 • updated 3.0 years ago by Kevin Blighe ♦ 66k
0
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1
answer
777
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1
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Nested loops write in xml
python loop biopython efetch xml written 3.1 years ago by Lilizine • 0
1
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1
answer
1.5k
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1
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NCBI Entrez - efetch from PMC returns only abstract
efetch entrez pmc written 3.2 years ago by chaniart • 0 • updated 3.2 years ago by Jean-Karim Heriche ♦ 23k
10
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1
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4.0k
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11 follow
1
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Download NCBI genomes using taxonomy id (taxid)
ncbi python efetch biopython written 3.6 years ago by David • 180 • updated 3.2 years ago by pedrorodrigues • 10
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0
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1.6k
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0
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Entrez progammaticly: Direct efetch or epost + efetch
epost efetch entrez written 3.2 years ago by guedes.aureliano • 0
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1
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1.5k
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1
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URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 3.3 years ago by Pierre Lindenbaum ♦ 131k • updated 3.3 years ago by genomax ♦ 91k
2
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1
answer
977
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1
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Mistakes in a bash script for adding taxid for nt database
taxid efetch nt database shell bash written 3.3 years ago by wyc661217 • 10 • updated 3.3 years ago by Istvan Albert ♦♦ 85k
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