eigenvector Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: eigenvector • reset

or Classic search

votes

answers

327

views

7 follow

answers

Tool: PCAtools: everything Principal Components Analysis

tool eigenvector pca bioconductor R written 6 weeks ago by Kevin Blighe ♦ 39k • updated 6 weeks ago by prasundutta87 • 330

Recent Votes

Recent Locations • All »

Ireland, 2 minutes ago
United Kingdom, 6 minutes ago
Republic of Ireland, 7 minutes ago

Recent Awards • All »

Teacher to Kevin Blighe ♦ 39k
Scholar to Pierre Lindenbaum ♦ 118k
Teacher to Kevin Blighe ♦ 39k
Scholar to ATpoint ♦ 14k
Scholar to Kevin Blighe ♦ 39k
Supporter to jeccy.J • 50

Recent Replies

C: New Variants Effect Prediction Tools by genomax ♦ 64k
http://snpeff.sourceforge.net/download.html#databases
C: IGV genome browser not displaying visualization when BAM file is uploaded by Devon Ryan ♦ 88k
Are you sure there are alignments in the region you're looking at? Use `samtools view` to ensure ...
C: How to check if first two components of PCA are separated without visualisation? by raunakms • 990
Think of the eigenvalues of PC1 and PC2 as x and y coordinates defining each dot in the plot abov...
C: New Variants Effect Prediction Tools by cocchi.e89 • 10
Thanks a lot for your reply! Do you know if they have downloadable DBs in to retrieve this inform...
C: New Variants Effect Prediction Tools by jared.andrews07 • 1.9k
Pretty sure VEP will still tell you whether it's missense or nonsense even if it isn't a known va...
C: Help for glmnet analyzing gene-pairs survival datas. by Kevin Blighe ♦ 39k
I show how to use glmnet in a standard situation, here: https://www.biostars.org/p/287511/#287555...
C: IGV genome browser not displaying visualization when BAM file is uploaded by tw617 • 20
Yes, I tried zooming in and there is nothing there.
C: IGV genome browser not displaying visualization when BAM file is uploaded by genomax ♦ 64k
Have you tried to zoom in to a specific area? By default IGV does not show alignments unless you ...
C: variant REF-ALT conversion to HGVS.c by cocchi.e89 • 10
Thanks a lot, really helpful!
C: GATK failing to find any variants - how to troubleshoot? by igor ♦ 7.4k
30M reads is not too shallow. You should be able to get variants with less than 1M reads. I am as...
C: Virus RNA Seq reads mapping with salmon by Adrian Pelin • 2.2k
I would use bbsplit to separate the host (sheep?) reads and virus reads. You can map to multiple ...
C: GATK failing to find any variants - how to troubleshoot? by Kevin Blighe ♦ 39k
Oh, don't worry, I alarm everybody. I see.. you're using the technique not just for calling vari...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 782 users visited in the last hour