Showing:
emboss • reset0
votes
1
answer
1.7k
views
1
answer
1
vote
1
answer
109
views
1
answer
4
votes
2
answers
163
views
2
answers
written 8 weeks ago by
marongiu.luigi • 350
• updated
8 weeks ago by
finswimmer ♦ 9.0k
8
votes
3
answers
5.7k
views
6 follow
3
answers
1
vote
0
answers
431
views
0
answers
written 14 months ago by
subramaniyam.ek • 0
• updated
13 months ago by
Biostar ♦♦ 20
5
votes
3
answers
2.9k
views
3
answers
written 4.4 years ago by
Eric Normandeau ♦ 10k
• updated
15 months ago by
peteladrien • 0
3
votes
1
answer
531
views
1
answer
written 17 months ago by
Jacob • 10
• updated
17 months ago by
Charles Plessy • 2.6k
0
votes
1
answer
712
views
1
answer
3
votes
1
answer
1.3k
views
1
answer
7
votes
1
answer
992
views
1
answer
written 2.5 years ago by
juanfelipe2005 • 10
• updated
2.5 years ago by
5heikki ♦ 8.0k
8
votes
1
answer
743
views
1
answer
written 2.6 years ago by
mikael.lenz.strube • 40
• updated
2.6 years ago by
SES ♦ 8.1k
3
votes
1
answer
1.4k
views
1
answer
written 4.1 years ago by
dolevrahat • 10
• updated
4.1 years ago by
RamRS ♦ 20k
5
votes
3
answers
2.4k
views
3
answers
Recent Votes
- A: What transcript quantification tool would you recommend for 3' prime RNA-seq?
- C: Imagining Alien Biology
- TFBS enrichiment analysis
- A: TFBS enrichiment analysis
- A: Denovo variant detection in trios using only 3 gVCF files
- C: Stringtie elimination of important transcripts
- C: Stringtie elimination of important transcripts
Recent Locations •
All »
- Seattle, WA USA, just now
- United Kingdom, just now
- Atlanta, 1 minute ago
- United States, 2 minutes ago
- United States, 3 minutes ago
Recent Awards • All »
- Scholar to jrj.healey ♦ 10.0k
- Appreciated to WouterDeCoster ♦ 36k
- Teacher to jrj.healey ♦ 10.0k
- Cylon to jrj.healey ♦ 10.0k
- Scholar to Rob ♦ 3.0k
- Popular Question to Bastien Hervé ♦ 2.8k
Recent Replies
-
A: snpEff building new database ERROR by
Vitis • 1.8k
I think you're supposed to build the database from a local fasta reference and gff3 annotation fi...
-
C: List of sequences in a fasta file. I need to generate the reverse complement for by
jrj.healey ♦ 10.0k
As the answer below shows, you need to include your write step inside the loop (indented). You w...
-
A: List of sequences in a fasta file. I need to generate the reverse complement for by
JC ♦ 7.1k
The problem is you are only writing the last record, you need something like: rev_comp2 = op...
-
C: snpEff building new database ERROR by
Anastasia A. • 0
Now that I was able to get the database to built I'm receiving the following when trying to downl...
-
C: snpEff building new database ERROR by
Anastasia A. • 0
Yes, you were right, that worked! Thank you!! (hate when it is just a typo)
-
C: snpEff building new database ERROR by
Vitis • 1.8k
Is the command you used? java -jar snpEff.jar build -gtf22 -v Zea_Mays_B73 Make sure the n...
-
C: Showing samples in or out of a range central tendencies by
F • 3.2k
Actually this is a HTG EdgeSeq assay. In this assay we have 4 negative probes by which we can ch...
-
C: snpEff building new database ERROR by
Anastasia A. • 0
Thank you for your reply, and yes I did add the genome to the snpEff config file and still receiv...
-
A: Filtering sam/bam by using CIGAR deletion sites by
Vitis • 1.8k
Pysam is a good tool to manipulate SAM/BAM with various attributes like CIGAR and mapping quality...
-
A: snpEff building new database ERROR by
Vitis • 1.8k
Similar problem with this: https://www.biostars.org/p/182267/ Have you added your genome entry...
-
C: Error while building new database for SnpEff by
Anastasia A. • 0
I'm currently running on the same issue. How were you able to fix it? Is it that it requires the ...
-
A: TFBS enrichiment analysis by
Alex Reynolds ♦ 27k
One possible approach is described below, which involves some manual work, but which facilitates ...
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1290 users visited in the last hour