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Should energy minimization of native and mutant protein structures be done before RMSD calculation between these two?

rmsd homology energy minimization yasara written 14 days ago by anis.geb.cu • 10

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440

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Automation for Energy Minimizing protien structure

energy minimization gromacs protein structure written 14 months ago by yashwanthakumar • 10 • updated 14 months ago by fracarb8 • 10

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934

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Error in MDS of complex

complex gromacs energy minimization written 3.4 years ago by Arindam Ghosh • 300

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924

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What is the basis of inputting the emtol parameter in the minim.mdp?

energy minimization gromacs written 3.6 years ago by syedazeemullah186 • 0

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1.0k

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Forum: Reasons of Doing Energy Minimization and Binding Site Prediction

virtual screening energy minimization binding site forum written 4.8 years ago by sakurashirleyke • 30

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1.6k

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protein ligand docking

protein ligand docking energy minimization written 5.0 years ago by sanbioinfo • 0

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2.3k

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Protein structure distorted after energy minimization using GROMACS

energy minimization written 5.4 years ago by BI • 70 • updated 5.4 years ago by venu ♦ 6.7k

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