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Great Question to
krmoon518
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GiantSilverSoy
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david.f.stein
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Recent Replies
Answer: Installing Pacbio Smrtanalysis On A Single Machine
by
sunilthorat
▴
30
Please refer to the youtube video for installation guidance:
> https://www.youtube.com/watch?v=HOyqd4nUDlQ&list=LL&index=5
Comment: Any script that can produce different mutations of protein sequences at specifie
by
Vincent Laufer
★
2.2k
sorry for adding to the confusion gentlemen. on the bright side, i did not know it existed and will now go play with it :-D
Comment: Scanpy Pearson residual PCA error
by
Emily
▴
30
not sure `ad.concat()` is a typo... did you mean you mean `pd.concat(....)`?
Answer: convert bedgraph to Granges object
by
rpolicastro
9.5k
the `import` function from `rtracklayer`
Comment: Interpreting data
by
Ram
36k
The moment you said negative = more in control, it had to mean that m_D goes in the denominator (which is weird since it should be the nume…
Comment: Any script that can produce different mutations of protein sequences at specifie
by
GenoMax
119k
Interesting. The server was not working when I checked earlier but it seems to be now.
Comment: Obtaining p-value and fold-change from a table
by
yoosefyud
▴
40
Thanks for your help.
Should I add the other rule with &?
I mean log fc Higher than 1.2 or lower that -1.2. How should I say this?
Also, I …
Comment: MarkDuplicates gives too few reads
by
Arup Ghosh
3.0k
Check overrepresented reads in Fastqc report and the number of duplicate reads with `samtools flagstat`. If the layout is paired, check lib…
Comment: gosling: import custom genome sequence
by
Arup Ghosh
3.0k
Check https://www.biostars.org/p/9535271/
Comment: Any script that can produce different mutations of protein sequences at specifie
by
Mensur Dlakic
★
20k
I used the design server some years ago, but don't know why it doesn't work or if it migrated elsewhere. Without logging in, it seems that …
Answer: lifting hg18 to hg38
by
LChart
700
You can use the liftover tool from UCSC http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/ (whatever build you're running).
First ma…
Answer: How to merge many huge gVCFs with high speed.
by
Jeremy Leipzig
20k
https://github.com/TileDB-Inc/TileDB-VCF
Answer: How to cluster list of proteins with uniprot IDs by KEGG orthology groups
by
Ernest Bonat
▴
10
One simple good idea could be use the [K-Means][1] Machine Learning clustering algorithm.
[1]: https://www.analyticsvidhya.com/blog/…
Answer: Can MarkDuplicates of Picard be used for RNA reads?
by
LChart
700
Yes, you can use it in RNA-seq. The degree of usefulness will depend on the method of library preparation, however. In cases where fragment…
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