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Answer: How should I normalize a dataset for non-normally distributed, zero-inflated, an
How should I normalize a dataset for non-normally distributed, zero-inflated, and unequal library size?
Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone
Comment: Error PacBio SMRT Link
Answer: ERROR: You must specify a valid interval for imputation using the -int argument,
Comment: Any script that can produce different mutations of protein sequences at specifie
Comment: Any script that can produce different mutations of protein sequences at specifie
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Recent Replies
Answer: Installing Pacbio Smrtanalysis On A Single Machine
by
sunilthorat
▴ 30
Please refer to the youtube video for installation guidance: > https://www.youtube.com/watch?v=HOyqd4nUDlQ&list=LL&index=5
Comment: Any script that can produce different mutations of protein sequences at specifie
by
Vincent Laufer
★ 2.2k
sorry for adding to the confusion gentlemen. on the bright side, i did not know it existed and will now go play with it :-D
Comment: Scanpy Pearson residual PCA error
by
Emily
▴ 30
not sure `ad.concat()` is a typo... did you mean you mean `pd.concat(....)`?
Answer: convert bedgraph to Granges object
by
rpolicastro
9.5k
the `import` function from `rtracklayer`
Comment: Interpreting data
by
Ram
36k
The moment you said negative = more in control, it had to mean that m_D goes in the denominator (which is weird since it should be the nume…
Comment: Any script that can produce different mutations of protein sequences at specifie
by
GenoMax
119k
Interesting. The server was not working when I checked earlier but it seems to be now.
Comment: Obtaining p-value and fold-change from a table
by
yoosefyud
▴ 40
Thanks for your help. Should I add the other rule with &? I mean log fc Higher than 1.2 or lower that -1.2. How should I say this? Also, I …
Comment: MarkDuplicates gives too few reads
by
Arup Ghosh
3.0k
Check overrepresented reads in Fastqc report and the number of duplicate reads with `samtools flagstat`. If the layout is paired, check lib…
Comment: gosling: import custom genome sequence
by
Arup Ghosh
3.0k
Check https://www.biostars.org/p/9535271/
Comment: Any script that can produce different mutations of protein sequences at specifie
by
Mensur Dlakic
★ 20k
I used the design server some years ago, but don't know why it doesn't work or if it migrated elsewhere. Without logging in, it seems that …
Comment: Align reads to indices file
by
GenoMax
119k
That is correct.
Answer: lifting hg18 to hg38
by
LChart
700
You can use the liftover tool from UCSC http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/ (whatever build you're running). First ma…
Answer: How to merge many huge gVCFs with high speed.
by
Jeremy Leipzig
20k
https://github.com/TileDB-Inc/TileDB-VCF
Answer: How to cluster list of proteins with uniprot IDs by KEGG orthology groups
by
Ernest Bonat
▴ 10
One simple good idea could be use the [K-Means][1] Machine Learning clustering algorithm. [1]: https://www.analyticsvidhya.com/blog/…
Answer: Can MarkDuplicates of Picard be used for RNA reads?
by
LChart
700
Yes, you can use it in RNA-seq. The degree of usefulness will depend on the method of library preparation, however. In cases where fragment…
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