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Tutorial: Clustering of DAVID gene enrichment results from gene expression studies

enrichment tutorial gene ontology david clustering written 22 months ago by Kevin Blighe ♦ 52k • updated 1 day ago by Dorothy • 0

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functional enichment with custom gene annotation

enrichment written 10 days ago by zhang.jianhai • 0

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Gene Set Enrichment Analysis using Variant Density instead of Expression levels?

R density gsea enrichment written 3.5 years ago by anp375 • 170 • updated 12 days ago by Biostar ♦♦ 20

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Functional annotation of pathways in a genelist

gene annotation pathway analysis gsea enrichment written 28 days ago by tejas_j • 0 • updated 28 days ago by hibernicah • 10

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Recent Replies

C: name of the figure by genomax ♦ 75k
Clonal architecture plots for a tumor are also represented in this way. See [**SciClone**][1] pap...
A: Transdecoder producing more proteins than assembly by h.mon ♦ 28k
TransDecoder.LongOrfs is just an intermediary step on the TransDecoder pipeline. To get the final...
C: tximport output should be integer values, IS NOT. by c_u • 140
Hi Ram, I understood that this is one of the main functions of `tximport` from here - https://www...
A: name of the figure by c_u • 140
To me it looks like overlapping horizontal violin plots, that have been smoothed at the edges. Th...
C: tximport output should be integer values, IS NOT. by RamRS ♦ 25k
> `tximport` is not converting the count values to integer, which is what its supposed to do. ...
C: [E::faidx_fetch_seq] error with Samtools mpileup? by mwerseb1 • 0
`grep "NC_000913.3 Escherichia coli str. K-12 substr. MG1655" ASM584v2.fna` >NC_000913.3 Esch...
C: [E::faidx_fetch_seq] error with Samtools mpileup? by ATpoint ♦ 26k
Please show output of: SEQ="NC_000913.3 Escherichia coli str. K-12 substr. MG1655" grep ...
C: name of the figure by Mensur Dlakic • 2.5k
Based on the information provided, it is either `Figure 3.` or `Screenshot-from-2019-12-12-15-56-...
A: scRNA-seq and the batch effects by jared.andrews07 • 4.2k
I have used the Seurat wrapper around fastMNN and can recommend it. It is generally less heavy-ha...
C: Tools For Analysis Allele Specific Expression In Rna-Seq Data? by ta_awwad • 230
many many thanks Susmita for the protocol.
A: Prokka Python Script for Gene Annotation by Mensur Dlakic • 2.5k
I second [**genomax**][1] suggestion to do this in shell scripts. Assuming your files have `.fna`...
C: scRNA-seq and the batch effects by Bogdan • 890
Thanks Charles. i was wondering if you have any recommendation/preference regarding LIGER, MNN, H...

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