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ensemble transcript ID to gene symbol using pybiomart

gene symbol ensemble protein id written 23 days ago by Quak • 310 • updated 22 days ago by Emily_Ensembl ♦ 20k

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196

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Refseq TSS vs Ensemble TSS

homer ensemble refseq tss written 3 months ago by srhic • 0

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255

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6 follow

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Why does every database have a different set of exons for TP53 (and other genes)?

gene R ensemble exons written 4 months ago by mrz132435 • 20 • updated 4 months ago by i.sudbery ♦ 6.3k

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307

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Getting Ensembl gene ID via biomart

biomart ensemble ensemble gene id written 6 months ago by seta • 1.2k • updated 6 months ago by Biostar ♦♦ 20

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Recent Replies

A: Transcription factor target gene by michael.ante • 3.5k
I know about TRANSFAC as a database for transcription factor - gene interaction. For a short over...
A: TreeMix: ERROR: cannot open file treemix.freq.gz by k.prata • 0
Very simple solution here I just figured out. I changed my file name from treemix.frq.gz to treem...
C: Error message running admixture in WSL (Ubuntu) : Segmentation fault (core dumpe by k.prata • 0
Tried everything as well. I have now moved to doing this analysis on my Mac computer.
C: What is the percent variance covered by an eigengene in WGCNA by udi.landau • 10
Hi. Thank you for your remarks. I posted here after I didn't got attention there for about 24 hou...
C: Transcription factor target gene by yztxwd • 240
For me (I'm not sure it is right), transcription factor target gene refers to those genes with th...
C: BLAST: Trying to find parameters to get the same results via Python as via the N by Shigeta • 460
i'm upvoting this because your code is the only example of qblast parameters i could find in half...
C: NR annotation and Uniprot annotation by prince26121991 • 50
I will not suggest you to consider uniprot result in this kind of case. Because if you think logi...
C: How to find the hub genes in the gene co-expression network constructed by WGCNA by Arindam Ghosh • 200
Regarding the third method, if I am not wrong, NetworkAnalyzer simply counts the number of edges ...
C: Has anyone run Phobius locally? Error - could not read provided fasta sequences by cgjosephlee • 0
Edit `phobius.pl` L25 to `my $DECODEANHMM = "$PHOBIUS_DIR/decodeanhmm.64bit";` and everythin...
C: NR annotation and Uniprot annotation by mxlsherry1992 • 30
Thank you so much!! pretty clear, and if for the publication, if these are important sequences, w...
C: scRNA-seq and the batch effects by Bogdan • 890
yes, thank you Igor. I was wondering what the experience of the people was ... , or if there ar...
C: UCSC Genome Browser GENCODE Subtrack Label Highlighted? by Kevin Blighe ♦ 52k
Thank you very much for posting this, Lou.

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