ensemble Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answer

242

views

answer

BiomaRt Many to Many Relationship filtering

orthologs biomart ensemble orthology written 9 months ago by iislam • 0 • updated 9 months ago by Ben_Ensembl • 1.6k

votes

answer

823

views

5 follow

answer

ensemble transcript ID to gene symbol using pybiomart

gene symbol ensemble protein id written 12 months ago by Quak • 380 • updated 12 months ago by Emily_Ensembl ♦ 21k

votes

answer

799

views

answer

Refseq TSS vs Ensemble TSS

homer ensemble refseq tss written 15 months ago by srhic • 20

votes

answers

469

views

6 follow

answers

Why does every database have a different set of exons for TP53 (and other genes)?

gene R ensemble exons written 15 months ago by mrz132435 • 20 • updated 15 months ago by i.sudbery ♦ 9.7k

vote

answers

528

views

answers

Getting Ensembl gene ID via biomart

biomart ensemble ensemble gene id written 18 months ago by seta • 1.4k • updated 18 months ago by Biostar ♦♦ 20

Recent Votes

Recent Locations • All »

Germany, 2 minutes ago
VIB, Ghent, Belgium, 2 minutes ago
Europe, 4 minutes ago
UCLA, 7 minutes ago

Recent Awards • All »

Good Answer to Mensur Dlakic • 7.2k
Teacher to Alex Reynolds ♦ 31k
Popular Question to chatterjee.arumoy • 10
Commentator to bioinformatics2020 • 520
Appreciated to Alex Reynolds ♦ 31k
Popular Question to A • 3.9k

Recent Replies

A: Use BioMart to get gene names for transcripts with isoform ID (e.g. NM_000014.6) by Kevin Blighe ♦ 67k
Not that I am aware, but you should be able to match the *biomaRt* output back to the original d...
A: Error in GSEA function of clusterProfiler on R by jimmy0958073736 • 0
I already try that method than before. But it’s just show the other error message said It’s not...
A: Error in GSEA function of clusterProfiler on R by jimmy0958073736 • 0
I already try that method than before. But it’s just show the other error message said It’s not...
C: trackplot: Fast and minimal dependency standalone R script to generate IGV style by poisonAlien • 2.9k
You are almost there. You just need to copy/move the binary to a `PATH` (e.g; `/usr/local/bin`) o...
C: How to check mitochondrial reference in GWAS data for HaploGrep analysis by haansi • 80
Hi! This sounds good, great to hear that. When you run haplogrep with the chip flag, the scores ...
C: ASMap for the qtl/r data by kandeldr79 • 0
I am having the exact same issue working with f2 gbs data in R/qtl to ASMap importing. After conv...
C: Illumina HumanHT-12 V3.0 expression beadchip reading data by vipulwagh31 • 10
Sure I will do that. Thank you once again.
C: Scanning for TFBSs of known motifs in all human promoters by hari_iyer16 • 10
Great. Thank you Alex for the wonderful writeup.
C: trackplot: Fast and minimal dependency standalone R script to generate IGV style by Sael • 20
Problem solved using: git clone https://github.com/CRG-Barcelona/libbeato.git git clone...
C: Script bash to split columns by _r_am ♦ 31k
How does this help OP? `column` formats content for display, it does nothing to split or manipula...
C: Mutual Information from Nucleotide Distribution in Python by _r_am ♦ 31k
Hello nameuser, Do not redact content after you've received feedback on a post. This is inconsid...
C: Scanning for TFBSs of known motifs in all human promoters by Alex Reynolds ♦ 31k
See: https://www.biostars.org/p/473952/#473984

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1107 users visited in the last hour