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KEGGREST using keggGet() for over 10 results and URL errors for unexisting records

pathways keggrest keggget enzymes list of list written 11 months ago by gualapuro.moises • 0

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242

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Normalizing CAZy data

genome annotation cazy fungi enzymes written 14 months ago by msobol • 20

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488

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How to characterise a protein "enzyme", and find evolutionary divergence into two distinct pathways?

pathway proteins enzymes protocol written 19 months ago by arpankbasak • 10

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3.1k

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Identify restriction sites of a cDNA sequence using a dictionary

python biopython restriction enzymes dictionary written 5.6 years ago by albamaria.muniesa • 0 • updated 5.6 years ago by Biojl • 1.7k

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Recent Replies

C: How to remove aligned sequnces? by vishalchanda364 • 10
Thank You so much for the help.
A: failed to installation by Mensur Dlakic • 3.2k
This is a kind of error that is difficult to troubleshoot from the information you provided. Gene...
A: copy number became inaccurate when downsampling different number fastq reads fro by lffu_0032 • 40
I want to known if anyone ever done the downsampling CNV analysis and encountered this problem?
C: copy number became inaccurate when downsampling different number fastq reads fro by lffu_0032 • 40
I used cnvkit，the result is the same.
C: Good quality control metrics to look out for when someone gives you BAMs by jared.andrews07 ♦ 4.8k
No, that's quite good as far as I've seen. Removing them may help reduce false positives from you...
C: Code for multiclass differential gene expression analysis by jared.andrews07 ♦ 4.8k
Is this RNA-seq? If so, I'd highly recommend using an established method based on negative binomi...
C: copy number became inaccurate when downsampling different number fastq reads fro by lffu_0032 • 40
I use seqtk sample command
C: how to find haplotype of SNPs by curious • 190
In VCF specification 0 is ref. I'm not sure if you can phase with 3 SNPs, somebody else will know...
C: how to find haplotype of SNPs by khatami.mahshid • 20
I have 3 SNPs and 450 samples. my problem is more about what "0/1" should be considered? I know i...
C: how to find haplotype of SNPs by curious • 190
How many SNPs/samples do you have? If I understand your problem right statistical phasing softwar...
C: Creating a GenomicsDBImport from the normal Mutect2 calls by curious • 190
Hey could you provide some more detail on what you are actually doing. I have been working with G...
C: What are some references of works that use a TPM expression threshold for filter by curious • 190
If I recall correctly a major output of Kallisto is the TPM metric. Maybe try looking at papers t...

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