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KEGGREST using keggGet() for over 10 results and URL errors for unexisting records

pathways keggrest keggget enzymes list of list written 22 months ago by gualapuro.moises • 0

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Normalizing CAZy data

genome annotation cazy fungi enzymes written 2.1 years ago by mss • 40

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597

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How to characterise a protein "enzyme", and find evolutionary divergence into two distinct pathways?

pathway proteins enzymes protocol written 2.5 years ago by arpankbasak • 10

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3.6k

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Identify restriction sites of a cDNA sequence using a dictionary

python biopython restriction enzymes dictionary written 6.5 years ago by albamaria.muniesa • 0 • updated 6.5 years ago by Biojl • 1.7k

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Recent Replies

C: What does p-value mean ? What and how can i interpret the results by _r_am ♦ 32k
I agree with both your points but saying "Google search should give you a bunch of articles" is b...
C: How to avoid building millions of BWA indices? by Pierre Lindenbaum ♦ 132k
> . Is there a way to somehow merge BAM files so I can save time from building BWA indices eac...
C: recent Hi-C databases by Bogdan • 1.1k
thanks a lot, very very helpful !
A: recent Hi-C databases by jared.andrews07 ♦ 8.3k
[This list](https://github.com/mdozmorov/HiC_data) on github is a pretty good one in terms of dat...
A: Trimmomatic couldn't generate output file by swbarnes2 ♦ 9.3k
For starters, I would not give your outputs the same name as your inputs! You need to keep input...
C: Meta-analysis of two datasets. by parveenkayenat • 0
The data is the result of GWAS of quatitative traits. I want to perform meta-analysis on those tw...
A: Getting all the genomic coordinates where RNA-seq reads are split within a given by Pierre Lindenbaum ♦ 132k
> I thought of trying something simple as obtaining all the coordinates in which the RNA-seq r...
C: Best-suited unit of expression to perform between-sample comparison by spaladug • 10
You should use TPM values for within sample comparison.
C: bedtools shuffle with adjustment of GC ratio by zekexu • 0
Hi Dr. Guo, Wondering if you have found a feasible solution? Or how to define the GC% range? I m...
C: STAR --quantMode GeneCounts vs HTSeq-count by Uday Rangaswamy • 150
Thanks. The count file of both the tools matched when I sorted it wrt name instead of the default...
C: ATAC-seq annotation to gene names by i.sudbery ♦ 10k
The inTad package, linked in my answer, is an R package. I'm sure you can do the other two meth...
A: ATAC-seq annotation to gene names by RHI • 0
Thank you so much. Is there a way I can do the same using R? Is there any package/function would ...

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