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Best practices in eQTL analysis
eqtl rna-seq written 6 months ago by i.sudbery11k • updated 6 months ago by rodd130
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What is a suitable LD threshold for LD pruning of snp data?
snp eqtl ld written 7 months ago by Colari1950 • updated 7 months ago by reza.jabal440
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Large differences in eQTLs between GTEx v7 and v8
eqtl written 8 months ago by pcmph10 • updated 8 months ago by geek_y11k
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How to normalise RNA-Seq counts for eQTL analysis with MT-eQTL
matrixeqtl eqtl rna-seq written 8 months ago by Colari1950 • updated 8 months ago by geek_y11k
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Covariates for eQTL analysis
matrixeqtl eqtl written 8 months ago by Colari1950 • updated 8 months ago by Floris Brenk980
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GTEx eQTL data
gene eqtl gtex written 11 months ago by jt0 • updated 11 months ago by Kevin Blighe71k
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Reproduction eQTL GTex Box plot
eqtl snp written 11 months ago by 74419800
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QQ plots for eqtl data
matrixeqtl eqtl written 2.9 years ago by jamespower50 • updated 11 months ago by Biostar ♦♦ 20
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SnpMatrix from VCF file
vcf matrixeqtl snpmatrix vcftools eqtl written 4.0 years ago by Dhana80 • updated 12 months ago by obidobi30
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Questions of rs17632542 in cis-eQTL-GTEx-V8
rs17632542 eqtl gtex v8 written 15 months ago by Shicheng Guo8.5k • updated 13 months ago by Biostar ♦♦ 20
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How to interpret the eQTLs in cancer
tcga rna-seq snp eqtl written 2.2 years ago by darklings200 • updated 15 months ago by cao5109270
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Finding a corresponding set of specific-tissue eQTLs for a list of known SNPs
genome R eqtl snp written 17 months ago by spela.salamon0 • updated 16 months ago by Biostar ♦♦ 20
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Download all eQTL data for all the 9 tissues from GTEx Portal
gtex portal eqtl written 6.8 years ago by komal.rathi3.7k • updated 17 months ago by GenoMax96k
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How to determine a list of independat eQTLs?
R eqtl written 20 months ago by anamaria140
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eQTL analysis considering P-values
genome R eqtl snp written 2.3 years ago by Uday Rangaswamy150 • updated 23 months ago by juhuvn0
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How does RNA relative abundance relate to SNPs and eQTLs?
snp rna gtex abundance eqtl written 24 months ago by rattus840 • updated 24 months ago by geek_y11k
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converting vcf to text file
vcf matrix eqtl eqtl written 3.4 years ago by Apoorva280 • updated 2.1 years ago by Biostar ♦♦ 20
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GTEx files, single tissue cis-eQTLs
eqtl gtex written 3.6 years ago by Louisa Pyle20 • updated 2.1 years ago by Shicheng Guo8.5k
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Genotype input in matrix eqtl with dosage dataset
dosage genotype eqtl written 2.3 years ago by Molly_K60 • updated 2.3 years ago by devidjohn470
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Plink: Understanding LD Clumping vs Pruning
clumping eqtl pruning ld plink written 2.4 years ago by JourneyToAbyss160 • updated 2.4 years ago by Kevin Blighe71k
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