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What is a suitable LD threshold for LD pruning of snp data?
snp eqtl ld written 14 days ago by Colari1950 • updated 14 days ago by reza.jabal420
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Large differences in eQTLs between GTEx v7 and v8
eqtl written 4 weeks ago by pcmph10 • updated 29 days ago by geek_y11k
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How to normalise RNA-Seq counts for eQTL analysis with MT-eQTL
matrixeqtl eqtl rna-seq written 7 weeks ago by Colari1950 • updated 4 weeks ago by geek_y11k
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134
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Covariates for eQTL analysis
matrixeqtl eqtl written 5 weeks ago by Colari1950 • updated 5 weeks ago by Floris Brenk940
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134
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GTEx eQTL data
gene eqtl gtex written 4 months ago by jt0 • updated 4 months ago by Kevin Blighe63k
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Reproduction eQTL GTex Box plot
eqtl snp written 4 months ago by 74419800
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QQ plots for eqtl data
matrixeqtl eqtl written 2.3 years ago by jamespower50 • updated 4 months ago by Biostar ♦♦ 20
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8 follow
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SnpMatrix from VCF file
vcf matrixeqtl snpmatrix vcftools eqtl written 3.4 years ago by Dhana80 • updated 5 months ago by cannilay20
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Questions of rs17632542 in cis-eQTL-GTEx-V8
rs17632542 eqtl gtex v8 written 8 months ago by Shicheng Guo8.3k • updated 6 months ago by Biostar ♦♦ 20
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How to interpret the eQTLs in cancer
tcga rna-seq snp eqtl written 19 months ago by darklings90 • updated 8 months ago by cao5109270
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Finding a corresponding set of specific-tissue eQTLs for a list of known SNPs
genome R eqtl snp written 10 months ago by spela.salamon0 • updated 9 months ago by Biostar ♦♦ 20
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6 follow
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Download all eQTL data for all the 9 tissues from GTEx Portal
gtex portal eqtl written 6.2 years ago by komal.rathi3.6k • updated 10 months ago by genomax87k
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How to determine a list of independat eQTLs?
R eqtl written 13 months ago by anamaria100
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3
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6 follow
3
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eQTL analysis considering P-values
genome R eqtl snp written 21 months ago by Uday Rangaswamy120 • updated 16 months ago by juhuvn0
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How does RNA relative abundance relate to SNPs and eQTLs?
snp rna gtex abundance eqtl written 17 months ago by rattus840 • updated 17 months ago by geek_y11k
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converting vcf to text file
vcf matrix eqtl eqtl written 2.8 years ago by Apoorva250 • updated 18 months ago by Biostar ♦♦ 20
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GTEx files, single tissue cis-eQTLs
eqtl gtex written 3.1 years ago by Louisa Pyle20 • updated 18 months ago by Shicheng Guo8.3k
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Genotype input in matrix eqtl with dosage dataset
dosage genotype eqtl written 20 months ago by Molly_K60 • updated 20 months ago by devidjohn470
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13
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14 follow
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Plink: Understanding LD Clumping vs Pruning
clumping eqtl pruning ld plink written 21 months ago by JourneyToAbyss130 • updated 21 months ago by Kevin Blighe63k
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1
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How to perform eQTL study if i have small sample size?
gwas eqtl snp rna-seq written 2.1 years ago by akilabioinfo0 • updated 2.1 years ago by maxime.policarpo90
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790
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Convert list of rs IDs from one format to another
snp eqtl gtex identifiers written 2.3 years ago by Mr Locuace100 • updated 2.3 years ago by finswimmer13k
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5 follow
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Qtl Analysis Using Principal Components As Covariates
eqtl rna-seq written 6.7 years ago by John70 • updated 2.4 years ago by geek_y11k
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