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Recent Replies
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C: mRNA.Exp[[page.Counter]] : subscript out of bounds by
chetana • 40
Hi, Were you able to fix that error? I've just come across the error and never really used Fireb...
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C: Run RepeatMasker problems by
xhfeng0307 • 0
Thanks, Sishuo, I will take a look on the post. Not sure could fix it.
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xhfeng0307 • 0
It seems like I do not have this folder, `~/anaconda3/share/RepeatMasker$ cd RepeatMasker bash: ...
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C: How to find a variant in a particular position in a bam file only using samtools by
h.mon ♦ 24k
In recent versions, mpileup has been moved from samtools to bcftools, and you don't need the grep...
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h.mon ♦ 24k
You should include a bed file with the targets captured by the exome out you used, not the "true"...
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Leon • 10
I have no experience with the method about MToolBox myself.
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moushengxu • 390
Thanks so much for the reply. How about MToolBox?
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C: How to find a variant in a particular position in a bam file only using samtools by
tw617 • 30
**THANK YOU!** $ samtools mpileup -v -u out.bam | grep "17375390" | cut -f 8 > out.vcf ...
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A: How to find a variant in a particular position in a bam file only using samtools by
swbarnes2 ♦ 5.0k
Look up how to use samtools mpileup
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C: How to find a variant in a particular position in a bam file only using samtools by
tw617 • 30
Thanks for the reply but I can already see it in IGV, I need to be able to show it is there using...
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A: How to find a variant in a particular position in a bam file only using samtools by
h.mon ♦ 24k
Call variants for the region of interest only (`-r chr:from-to`), output vcf, and use the vcf to ...
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C: Y-DNA and mtDNA Haplogroup Predictor by
Leon • 10
if you want to use vcf file as software input, for mtDNA, I think haplogrep is the most popular c...
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