ete3 Posts

A: How to annotate gene list using enrichr? by nattzy94 • 10
It's skipped about 3000 genes. I passed ~8000 genes into queryMany using the GoBiologicalProcess ...
A: How to annotate gene list using enrichr? by b.bearmi • 0
not all the genes have annotated functions? Can you give an example of what enrichr has skipped?
C: Interpreting allele values in VFC file by b.bearmi • 0
Unless you are dealing with bacteria, you would have two copies of the same gene (plants - could ...
A: mutate function dropping row names in r by b.bearmi • 0
Can you include a short reproducible example of how your data looks like? If your row order (and...
C: ERROR:SAM to BAM using samtools by gula • 0
Thank you for your help:D! It turns out that the '@' character brings the problem~
C: ERROR:SAM to BAM using samtools by gula • 0
It is the `@` character in the read names that leads to the error message. I modify my fasta file...
A: Are there advantages in using high accuracy models for guppy basecaller when Ill by ikangkim • 30
Thank you for a reply. I also feel that hac models would be better for downstream analyses. I th...
A: Indel Annotation Tools, Not Loss Of Function by Collin • 680
You could check out [OpenCRAVAT][1], it will annotate variants including indels. Unlike tools lik...
C: tximport output should be integer values, IS NOT. by c_u • 140
Ram, I changed my code to have DESeqDataSetFromTximport() instead of DESeqDataSetFromMatrix(), an...
C: scRNA-seq and the batch effects by Charles Warden ♦ 7.5k
I don't think I have tried those methods. It has been a little while since I worked on a scRNA-S...
C: name of the figure by genomax ♦ 75k
Clonal architecture plots for a tumor are also represented in this way. See [**SciClone**][1] pap...
A: Transdecoder producing more proteins than assembly by h.mon ♦ 28k
TransDecoder.LongOrfs is just an intermediary step on the TransDecoder pipeline. To get the final...

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