ete3 Posts

A: Question on patterns search in DNA sequences by max.rempel2 • 0
Ugene is a windows program and it does that (only in one strand, but still pretty useful).
A: How to evaluate correlation for multiple measurements per point? by max.rempel2 • 0
Finally, I just used a simple correlation test and it seemed to work just fine.
A: Convert the genotype format from numeric to letters by Leon • 70
#!/usr/bin/env python2 #!/coding:utf-8 import sys import os import gzip ...
C: Abundance Counting for Non-Model Organism for edgeR by sdbaney • 0
Thank you, I think that’s what I’m going to end up doing. As stringtie seems to be causing more h...
C: Plot the correlations between OTUs and genes by Asaf ♦ 5.6k
I don't know, it might be that two OTUs are correlated and only one has the KO, might be another ...
C: How to group gene dataset and run t.test for each row for every gene in R? by ishackm • 50
Thanks very much for your help Shawn, very much appreciated for the clear explanation
A: How to calculate the AUC value for a ranger RF model ? by Researcher • 20
Hi debitboro, By any chance, did you get this answer?
C: UK Biobank l2r data holds segment means but no segment locations? by RamRS ♦ 21k
`biobank`, `cnv` seem to be tags relevant to your post, whereas `genome` doesn't really say much....
C: bedtools multicov displays only the last BED feature by rania.hamdy1 • 0
I want to count histone modification reads that fall in some predefined regions of a genome usin...
C: DESeq2 results difference between use of lfcThreshold and sequential cutoffs. by shammond • 0
As written, the log2 fold-change threshold that you're using in Method B is 0. Try lfcThreshold=1.
C: custom database in HH-suite by yp19 • 10
Thanks! Yeah, I was just worried about losing the orthogroup information, if i create the databas...
A: custom database in HH-suite by jrj.healey ♦ 12k
I think you can just make a single database if I’ve understood the problem correctly. The databa...

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