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2
votes
1
answer
58
views
1
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How to efetch specific attributes from BioSamples?
ncbi xml eutils written 14 days ago by Arindam Ghosh • 150 • updated 14 days ago by Pierre Lindenbaum ♦ 117k
6
votes
1
answer
268
views
1
answer
How do I loop over a list of gene symbols to extract sequences from NCBI?
ncbi eutils bash written 3 months ago by MAPK • 1.4k
1
vote
1
answer
193
views
1
answer
Strange esearch behavior
ncbi esearch eutils written 3 months ago by RamRS ♦ 20k
2
votes
1
answer
160
views
1
answer
Exclude Replaced or Discontinued UIDs from an reutils.esearch operation
ncbi esearch eutils written 3 months ago by RamRS ♦ 20k • updated 3 months ago by genomax ♦ 62k
3
votes
0
answers
249
views
0
answers
How do I make this perl script work to fetch sequences from NCBI using gene symbols?
perl eutils written 3 months ago by MAPK • 1.4k • updated 3 months ago by genomax ♦ 62k
2
votes
1
answer
205
views
1
answer
Number of citations of an article per year using PMIDs
yearly eutils pmids citation count written 4 months ago by clem.essien • 0 • updated 4 months ago by h.mon ♦ 23k
11
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3
answers
3.6k
views
5 follow
3
answers
Ncbi Esearch :Searching For Snp/Genes/... At In A Given Segment Chr:Start-End ?
ncbi search eutils written 8.7 years ago by Pierre Lindenbaum ♦ 117k • updated 5 months ago by RamRS ♦ 20k
2
votes
1
answer
457
views
1
answer
Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 10 months ago by auninsaw • 10
1
vote
1
answer
336
views
1
answer
Some SNP XML document not available via an eutils query
xml snp eutils written 10 months ago by longoka • 30
0
votes
0
answers
518
views
0
answers
How to retrieve direct children of a taxon through Entrez using taxon IDs
taxonomy entrez eutils written 14 months ago by zbwrnz • 0 • updated 14 months ago by Biostar ♦♦ 20
3
votes
1
answer
486
views
1
answer
Eutils: identifying complete genomes
eutils written 20 months ago by idan.yelin • 0 • updated 14 months ago by Biostar ♦♦ 20
3
votes
0
answers
529
views
0
answers
News: NCBI : New API Keys for the E-utilities
ncbi api news eutils pubmed written 15 months ago by Pierre Lindenbaum ♦ 117k
9
votes
3
answers
789
views
3
answers
How many ID's exist in BioSample?
ncbi biosample eutils bioproject written 15 months ago by pedrorvc • 30 • updated 15 months ago by Pierre Lindenbaum ♦ 117k
0
votes
1
answer
855
views
1
answer
URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 20 months ago by Pierre Lindenbaum ♦ 117k • updated 20 months ago by genomax ♦ 62k
5
votes
1
answer
535
views
6 follow
1
answer
'ORIGIN' flag missing in GenBank files
ncbi genbank eutils written 21 months ago by Sej Modha ♦ 4.0k • updated 21 months ago by Joseph Hughes • 2.7k
2
votes
1
answer
692
views
1
answer
Linking NCBI gene ID's to nucleotide sequence
ncbi rna-seq eutils written 23 months ago by jared.j.tromp • 0 • updated 23 months ago by Jean-Karim Heriche ♦ 18k
2
votes
0
answers
695
views
0
answers
eUtils and GEO database
geo ncbi eutils written 2.0 years ago by russhh • 4.2k • updated 23 months ago by Biostar ♦♦ 20
3
votes
1
answer
869
views
1
answer
How to transform locus_tags to protein sequences (bacteria)
locus bacteria eutils written 23 months ago by natasha.sernova • 3.3k • updated 23 months ago by pure_reason • 10
1
vote
1
answer
563
views
1
answer
Find species biosample entries on NCBI with attached antibiograms
ncbi eutils written 2.0 years ago by Jenez • 510 • updated 2.0 years ago by Asaf ♦ 5.2k
3
votes
1
answer
981
views
1
answer
Pubmed title to pubmed ID conversion
R pubmed entrez eutils reutils written 2.1 years ago by daniele.sartori01 • 0 • updated 2.1 years ago by genomax ♦ 62k
4
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2
answers
1.5k
views
2
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How can we download all TSA and WGS from NCBI Trace by taxon programmatically?
ncbi assembly trace efetch eutils written 2.3 years ago by Michael Dondrup ♦ 45k
1
vote
1
answer
861
views
1
answer
Alternatives to EUtils to get Taxa from GenBank
ncbi taxonomy eutils genbank written 2.3 years ago by irazoqui.matias • 10 • updated 2.3 years ago by Sej Modha ♦ 4.0k
1
vote
0
answers
747
views
0
answers
Tool: BioDocumentViewer: NCBI/EBI web services made easy
ncbi ebi tool eutils ebe-eye written 2.3 years ago by patrick.durand • 120
1
vote
0
answers
1.1k
views
0
answers
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez eutils written 2.6 years ago by Tom • 20
0
votes
1
answer
1.0k
views
1
answer
Extracting the coding sequences for a set of protein IDs - NCBI.
ncbi coding sequence protein eutils parsing written 2.6 years ago by Tom • 20 • updated 2.6 years ago by Sej Modha ♦ 4.0k
1
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0
answers
595
views
0
answers
Get fastas for genes by gene symbol
fasta eutils written 2.6 years ago by acorella • 30
0
votes
1
answer
635
views
1
answer
Retrieving Cell names of an experiment using NCBI - Eutil API
ncbi eutils cell type rna-seq written 2.7 years ago by startup_biostar • 0 • updated 2.7 years ago by Ar • 800
18
votes
3
answers
3.9k
views
5 follow
3
answers
NCBI Protein GI to Genome Accession
ncbi sequence eutils written 3.7 years ago by Sej Modha ♦ 4.0k
2
votes
1
answer
1.2k
views
1
answer
How to Elink identical proteins from protein id?
ncbi elink eutils written 3.2 years ago by Jenez • 510 • updated 3.2 years ago by Pierre Lindenbaum ♦ 117k
1
vote
0
answers
1.4k
views
0
answers
Find an existing nucleotide sequence for a specific protein sequence through NCBI eutils
efetch sequence esearch elink eutils written 3.2 years ago by Jenez • 510
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