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19
votes
4
answers
5.2k
views
6 follow
4
answers
NCBI Protein GI to Genome Accession
ncbi sequence eutils written 5.0 years ago by Sej Modha ♦ 4.7k • updated 4 weeks ago by josev.die • 20
0
votes
0
answers
156
views
0
answers
Biopython HTTPError when Fetching more than 1400 Entries from NCBI
ncbi biopython eutils written 4 months ago by tobias.kraft-blank • 0
1
vote
0
answers
161
views
0
answers
fetch all relevant datasedts from GEO database
geo ncbi eutils written 7 months ago by APJ • 30
3
votes
1
answer
897
views
1
answer
How do I make this perl script work to fetch sequences from NCBI using gene symbols?
perl eutils written 19 months ago by MAPK • 1.5k • updated 13 months ago by josev.die • 20
4
votes
1
answer
595
views
1
answer
Is there way to get genbank assembly id from nuccore id using ncbi eutils ?
entrez eutils written 14 months ago by Prasad • 30 • updated 14 months ago by genomax ♦ 83k
0
votes
1
answer
351
views
1
answer
How to retrieve specification of search used in Pubmed history item?
e-utilities etools entrez eutils pubmed written 14 months ago by TerryH • 0
4
votes
1
answer
840
views
1
answer
How to efetch specific attributes from BioSamples?
ncbi xml eutils written 16 months ago by Arindam Ghosh • 250 • updated 16 months ago by Pierre Lindenbaum ♦ 128k
6
votes
1
answer
704
views
1
answer
How do I loop over a list of gene symbols to extract sequences from NCBI?
ncbi eutils bash written 19 months ago by MAPK • 1.5k
1
vote
1
answer
419
views
1
answer
Strange esearch behavior
ncbi esearch eutils written 19 months ago by RamRS ♦ 27k
2
votes
1
answer
492
views
1
answer
Exclude Replaced or Discontinued UIDs from an reutils.esearch operation
ncbi esearch eutils written 19 months ago by RamRS ♦ 27k • updated 19 months ago by genomax ♦ 83k
2
votes
1
answer
547
views
1
answer
Number of citations of an article per year using PMIDs
yearly eutils pmids citation count written 19 months ago by clem.essien • 0 • updated 19 months ago by h.mon ♦ 29k
11
votes
3
answers
4.0k
views
5 follow
3
answers
Ncbi Esearch :Searching For Snp/Genes/... At In A Given Segment Chr:Start-End ?
ncbi search eutils written 10.0 years ago by Pierre Lindenbaum ♦ 128k • updated 21 months ago by RamRS ♦ 27k
2
votes
1
answer
1.6k
views
1
answer
Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 2.1 years ago by auninsaw • 10
1
vote
1
answer
573
views
1
answer
Some SNP XML document not available via an eutils query
xml snp eutils written 2.2 years ago by longoka • 40
0
votes
0
answers
823
views
0
answers
How to retrieve direct children of a taxon through Entrez using taxon IDs
taxonomy entrez eutils written 2.5 years ago by zbwrnz • 0 • updated 2.5 years ago by Biostar ♦♦ 20
3
votes
1
answer
666
views
1
answer
Eutils: identifying complete genomes
eutils written 3.0 years ago by idan.yelin • 0 • updated 2.5 years ago by Biostar ♦♦ 20
3
votes
0
answers
973
views
0
answers
News: NCBI : New API Keys for the E-utilities
ncbi api news eutils pubmed written 2.6 years ago by Pierre Lindenbaum ♦ 128k
9
votes
3
answers
1.4k
views
3
answers
How many ID's exist in BioSample?
ncbi biosample eutils bioproject written 2.6 years ago by pedrorvc • 30 • updated 2.6 years ago by Pierre Lindenbaum ♦ 128k
0
votes
1
answer
1.4k
views
1
answer
URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 3.0 years ago by Pierre Lindenbaum ♦ 128k • updated 3.0 years ago by genomax ♦ 83k
5
votes
1
answer
761
views
6 follow
1
answer
'ORIGIN' flag missing in GenBank files
ncbi genbank eutils written 3.1 years ago by Sej Modha ♦ 4.7k • updated 3.1 years ago by Joseph Hughes • 2.8k
2
votes
1
answer
1.1k
views
1
answer
Linking NCBI gene ID's to nucleotide sequence
ncbi rna-seq eutils written 3.2 years ago by jared.j.tromp • 0 • updated 3.2 years ago by Jean-Karim Heriche ♦ 22k
2
votes
0
answers
1.0k
views
0
answers
eUtils and GEO database
geo ncbi eutils written 3.3 years ago by russhh ♦ 5.3k • updated 3.2 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.4k
views
1
answer
How to transform locus_tags to protein sequences (bacteria)
locus bacteria eutils written 3.2 years ago by natasha.sernova • 3.7k • updated 3.2 years ago by pure_reason • 10
1
vote
1
answer
782
views
1
answer
Find species biosample entries on NCBI with attached antibiograms
ncbi eutils written 3.3 years ago by Jenez • 520 • updated 3.3 years ago by Asaf ♦ 7.6k
3
votes
1
answer
1.3k
views
1
answer
Pubmed title to pubmed ID conversion
R pubmed entrez eutils reutils written 3.4 years ago by daniele.sartori01 • 0 • updated 3.4 years ago by genomax ♦ 83k
5
votes
2
answers
2.3k
views
2
answers
How can we download all TSA and WGS from NCBI Trace by taxon programmatically?
ncbi assembly trace efetch eutils written 3.6 years ago by Michael Dondrup ♦ 47k
1
vote
1
answer
1.2k
views
1
answer
Alternatives to EUtils to get Taxa from GenBank
ncbi taxonomy eutils genbank written 3.6 years ago by irazoqui.matias • 10 • updated 3.6 years ago by Sej Modha ♦ 4.7k
1
vote
0
answers
973
views
0
answers
Tool: BioDocumentViewer: NCBI/EBI web services made easy
ncbi ebi tool eutils ebe-eye written 3.6 years ago by patrick.durand • 140
1
vote
0
answers
1.4k
views
0
answers
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez eutils written 3.8 years ago by Tom • 30
0
votes
1
answer
1.3k
views
1
answer
Extracting the coding sequences for a set of protein IDs - NCBI.
ncbi coding sequence protein eutils parsing written 3.8 years ago by Tom • 30 • updated 3.8 years ago by Sej Modha ♦ 4.7k
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