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6
votes
1
answer
168
views
1
answer
How do I loop over a list of gene symbols to extract sequences from NCBI?
ncbi eutils bash written 6 weeks ago by MAPK • 1.3k
1
vote
1
answer
150
views
1
answer
Strange esearch behavior
ncbi esearch eutils written 6 weeks ago by RamRS ♦ 19k
2
votes
1
answer
116
views
1
answer
Exclude Replaced or Discontinued UIDs from an reutils.esearch operation
ncbi esearch eutils written 6 weeks ago by RamRS ♦ 19k • updated 6 weeks ago by genomax ♦ 59k
3
votes
0
answers
158
views
0
answers
How do I make this perl script work to fetch sequences from NCBI using gene symbols?
perl eutils written 6 weeks ago by MAPK • 1.3k • updated 6 weeks ago by genomax ♦ 59k
2
votes
1
answer
155
views
1
answer
Number of citations of an article per year using PMIDs
yearly eutils pmids citation count written 7 weeks ago by clem.essien • 0 • updated 7 weeks ago by h.mon ♦ 21k
11
votes
3
answers
3.5k
views
5 follow
3
answers
Ncbi Esearch :Searching For Snp/Genes/... At In A Given Segment Chr:Start-End ?
ncbi search eutils written 8.5 years ago by Pierre Lindenbaum ♦ 115k • updated 3 months ago by RamRS ♦ 19k
2
votes
1
answer
341
views
1
answer
Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 7 months ago by auninsaw • 10
1
vote
1
answer
290
views
1
answer
Some SNP XML document not available via an eutils query
xml snp eutils written 8 months ago by longoka • 30
0
votes
0
answers
470
views
0
answers
How to retrieve direct children of a taxon through Entrez using taxon IDs
taxonomy entrez eutils written 12 months ago by zbwrnz • 0 • updated 11 months ago by Biostar ♦♦ 20
3
votes
1
answer
453
views
1
answer
Eutils: identifying complete genomes
eutils written 18 months ago by idan.yelin • 0 • updated 12 months ago by Biostar ♦♦ 20
3
votes
0
answers
480
views
0
answers
News: NCBI : New API Keys for the E-utilities
ncbi api news eutils pubmed written 13 months ago by Pierre Lindenbaum ♦ 115k
6
votes
3
answers
686
views
3
answers
How many ID's exist in BioSample?
ncbi biosample eutils bioproject written 13 months ago by pedrorvc • 20 • updated 13 months ago by Pierre Lindenbaum ♦ 115k
0
votes
1
answer
773
views
1
answer
URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 17 months ago by Pierre Lindenbaum ♦ 115k • updated 17 months ago by genomax ♦ 59k
5
votes
1
answer
499
views
6 follow
1
answer
'ORIGIN' flag missing in GenBank files
ncbi genbank eutils written 19 months ago by Sej Modha ♦ 3.9k • updated 19 months ago by Joseph Hughes • 2.6k
2
votes
1
answer
634
views
1
answer
Linking NCBI gene ID's to nucleotide sequence
ncbi rna-seq eutils written 20 months ago by jared.j.tromp • 0 • updated 20 months ago by Jean-Karim Heriche ♦ 17k
2
votes
0
answers
624
views
0
answers
eUtils and GEO database
geo ncbi eutils written 22 months ago by russhh • 4.1k • updated 20 months ago by Biostar ♦♦ 20
3
votes
1
answer
768
views
1
answer
How to transform locus_tags to protein sequences (bacteria)
locus bacteria eutils written 21 months ago by natasha.sernova • 3.1k • updated 21 months ago by pure_reason • 10
1
vote
1
answer
514
views
1
answer
Find species biosample entries on NCBI with attached antibiograms
ncbi eutils written 22 months ago by Jenez • 510 • updated 22 months ago by Asaf ♦ 5.0k
3
votes
1
answer
901
views
1
answer
Pubmed title to pubmed ID conversion
R pubmed entrez eutils reutils written 23 months ago by daniele.sartori01 • 0 • updated 23 months ago by genomax ♦ 59k
4
votes
2
answers
1.3k
views
2
answers
How can we download all TSA and WGS from NCBI Trace by taxon programmatically?
ncbi assembly trace efetch eutils written 2.1 years ago by Michael Dondrup ♦ 45k
1
vote
1
answer
803
views
1
answer
Alternatives to EUtils to get Taxa from GenBank
ncbi taxonomy eutils genbank written 2.1 years ago by irazoqui.matias • 10 • updated 2.1 years ago by Sej Modha ♦ 3.9k
1
vote
0
answers
711
views
0
answers
Tool: BioDocumentViewer: NCBI/EBI web services made easy
ncbi ebi tool eutils ebe-eye written 2.1 years ago by patrick.durand • 120
1
vote
0
answers
1.0k
views
0
answers
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez eutils written 2.4 years ago by Tom • 20
0
votes
1
answer
944
views
1
answer
Extracting the coding sequences for a set of protein IDs - NCBI.
ncbi coding sequence protein eutils parsing written 2.4 years ago by Tom • 20 • updated 2.4 years ago by Sej Modha ♦ 3.9k
1
vote
0
answers
562
views
0
answers
Get fastas for genes by gene symbol
fasta eutils written 2.4 years ago by acorella • 30
0
votes
1
answer
614
views
1
answer
Retrieving Cell names of an experiment using NCBI - Eutil API
ncbi eutils cell type rna-seq written 2.5 years ago by startup_biostar • 0 • updated 2.5 years ago by Ar • 800
18
votes
3
answers
3.7k
views
5 follow
3
answers
NCBI Protein GI to Genome Accession
ncbi sequence eutils written 3.5 years ago by Sej Modha ♦ 3.9k
2
votes
1
answer
1.2k
views
1
answer
How to Elink identical proteins from protein id?
ncbi elink eutils written 3.0 years ago by Jenez • 510 • updated 3.0 years ago by Pierre Lindenbaum ♦ 115k
1
vote
0
answers
1.3k
views
0
answers
Find an existing nucleotide sequence for a specific protein sequence through NCBI eutils
efetch sequence esearch elink eutils written 3.0 years ago by Jenez • 510
0
votes
0
answers
846
views
0
answers
Determining variant strand from dbSNP entrez document summary
ncbi dbsnp strand eutils entrez written 3.0 years ago by sbrown8 • 20 • updated 3.0 years ago by Biostar ♦♦ 20
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