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Is there a way to do a batch extraction of DNA Coding Sequences from List of Protein Accessions (NCBI)?
ncbi nuccore protein eutils cds written 28 days ago by biobaker • 0
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0
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79
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0
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NCBI EUtils: identifying projects with both NGS and Sanger sequencing
ncbi data type eutils written 28 days ago by sovrappensiero • 10
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1
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127
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1
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Elink to get PMID associated with a BioProject or SRA entry
ncbi bioproject eutils pmid pubmed written 29 days ago by sovrappensiero • 10 • updated 29 days ago by Istvan Albert ♦♦ 85k
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139
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Is there a way to limit the number of returned efetch (text, tabular) terms with just the entrez api (not entrez direct)
ncbi entrez eutils written 11 weeks ago by DNAlias • 10
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1
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185
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1
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How to extract Isolation source Attributes from Biosample db using NCBI eutils
ncbi eutils written 3 months ago by Prasad • 30
3
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1
answer
160
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1
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Count the number of exons in a trasncript
ncbi exon transcript eutils written 3 months ago by speycast • 0 • updated 3 months ago by genomax ♦ 92k
3
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2
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227
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2
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efetch by UID list returns more UIDs than requested
entrez eutils written 3 months ago by ors9 • 0
3
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1
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199
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1
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Retrieve RefSeq protein accession from transcript accession
ncbi refseq eutils written 5 months ago by speycast • 0 • updated 5 months ago by genomax ♦ 92k
19
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4
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5.7k
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6 follow
4
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NCBI Protein GI to Genome Accession
ncbi sequence eutils written 5.5 years ago by Sej Modha ♦ 4.7k • updated 6 months ago by josev.die • 20
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286
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Biopython HTTPError when Fetching more than 1400 Entries from NCBI
ncbi biopython eutils written 10 months ago by tobias.kraft-blank • 0
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224
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fetch all relevant datasedts from GEO database
geo ncbi eutils written 13 months ago by APJ • 30
3
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1
answer
1.1k
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1
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How do I make this perl script work to fetch sequences from NCBI using gene symbols?
perl eutils written 2.1 years ago by MAPK • 1.7k • updated 19 months ago by josev.die • 20
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1
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849
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1
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Is there way to get genbank assembly id from nuccore id using ncbi eutils ?
entrez eutils written 20 months ago by Prasad • 30 • updated 20 months ago by genomax ♦ 92k
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424
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1
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How to retrieve specification of search used in Pubmed history item?
e-utilities etools entrez eutils pubmed written 20 months ago by TerryH • 0
4
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1
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1.2k
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1
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How to efetch specific attributes from BioSamples?
ncbi xml eutils written 21 months ago by Arindam Ghosh • 330 • updated 21 months ago by Pierre Lindenbaum ♦ 131k
6
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1
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848
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1
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How do I loop over a list of gene symbols to extract sequences from NCBI?
ncbi eutils bash written 2.1 years ago by MAPK • 1.7k
1
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1
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489
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1
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Strange esearch behavior
ncbi esearch eutils written 2.1 years ago by RamRS ♦ 30k
2
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1
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600
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1
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Exclude Replaced or Discontinued UIDs from an reutils.esearch operation
ncbi esearch eutils written 2.1 years ago by RamRS ♦ 30k • updated 2.1 years ago by genomax ♦ 92k
2
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1
answer
781
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1
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Number of citations of an article per year using PMIDs
yearly eutils pmids citation count written 2.1 years ago by clem.essien • 0 • updated 2.1 years ago by h.mon ♦ 31k
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3
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5 follow
3
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Ncbi Esearch :Searching For Snp/Genes/... At In A Given Segment Chr:Start-End ?
ncbi search eutils written 10.5 years ago by Pierre Lindenbaum ♦ 131k • updated 2.2 years ago by RamRS ♦ 30k
2
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1
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2.2k
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1
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Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 2.6 years ago by auninsaw • 10
1
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1
answer
653
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1
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Some SNP XML document not available via an eutils query
xml snp eutils written 2.7 years ago by longoka • 40
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0
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978
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0
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How to retrieve direct children of a taxon through Entrez using taxon IDs
taxonomy entrez eutils written 3.0 years ago by zbwrnz • 0 • updated 2.9 years ago by Biostar ♦♦ 20
3
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1
answer
714
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1
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Eutils: identifying complete genomes
eutils written 3.5 years ago by idan.yelin • 0 • updated 3.0 years ago by Biostar ♦♦ 20
3
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1.2k
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0
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News: NCBI : New API Keys for the E-utilities
ncbi api news eutils pubmed written 3.1 years ago by Pierre Lindenbaum ♦ 131k
9
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3
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1.6k
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3
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How many ID's exist in BioSample?
ncbi biosample eutils bioproject written 3.1 years ago by pedrorvc • 30 • updated 3.1 years ago by Pierre Lindenbaum ♦ 131k
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1
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1.5k
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1
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URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 3.4 years ago by Pierre Lindenbaum ♦ 131k • updated 3.4 years ago by genomax ♦ 92k
5
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1
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839
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6 follow
1
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'ORIGIN' flag missing in GenBank files
ncbi genbank eutils written 3.6 years ago by Sej Modha ♦ 4.7k • updated 3.6 years ago by Joseph Hughes • 2.8k
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1
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1.3k
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1
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Linking NCBI gene ID's to nucleotide sequence
ncbi rna-seq eutils written 3.7 years ago by jared.j.tromp • 0 • updated 3.7 years ago by Jean-Karim Heriche ♦ 23k
2
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0
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1.2k
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0
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eUtils and GEO database
geo ncbi eutils written 3.8 years ago by russhh ♦ 5.5k • updated 3.7 years ago by Biostar ♦♦ 20
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