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3
votes
1
answer
549
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1
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How do I make this perl script work to fetch sequences from NCBI using gene symbols?
perl eutils written 10 months ago by MAPK • 1.4k • updated 5 months ago by josev.die • 10
2
votes
1
answer
236
views
1
answer
Is there way to get genbank assembly id from nuccore id using ncbi eutils ?
entrez eutils written 5 months ago by Prasad • 10 • updated 5 months ago by genomax ♦ 71k
0
votes
1
answer
199
views
1
answer
How to retrieve specification of search used in Pubmed history item?
e-utilities etools entrez eutils pubmed written 5 months ago by TerryH • 0
2
votes
1
answer
348
views
1
answer
How to efetch specific attributes from BioSamples?
ncbi xml eutils written 7 months ago by Arindam Ghosh • 170 • updated 7 months ago by Pierre Lindenbaum ♦ 122k
6
votes
1
answer
472
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1
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How do I loop over a list of gene symbols to extract sequences from NCBI?
ncbi eutils bash written 10 months ago by MAPK • 1.4k
1
vote
1
answer
307
views
1
answer
Strange esearch behavior
ncbi esearch eutils written 10 months ago by RamRS ♦ 24k
2
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1
answer
289
views
1
answer
Exclude Replaced or Discontinued UIDs from an reutils.esearch operation
ncbi esearch eutils written 10 months ago by RamRS ♦ 24k • updated 10 months ago by genomax ♦ 71k
2
votes
1
answer
312
views
1
answer
Number of citations of an article per year using PMIDs
yearly eutils pmids citation count written 11 months ago by clem.essien • 0 • updated 11 months ago by h.mon ♦ 27k
11
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3
answers
3.8k
views
5 follow
3
answers
Ncbi Esearch :Searching For Snp/Genes/... At In A Given Segment Chr:Start-End ?
ncbi search eutils written 9.3 years ago by Pierre Lindenbaum ♦ 122k • updated 12 months ago by RamRS ♦ 24k
2
votes
1
answer
830
views
1
answer
Getting taxid from accession number
taxid efetch taxonomy genbank eutils written 16 months ago by auninsaw • 10
1
vote
1
answer
445
views
1
answer
Some SNP XML document not available via an eutils query
xml snp eutils written 17 months ago by longoka • 30
0
votes
0
answers
652
views
0
answers
How to retrieve direct children of a taxon through Entrez using taxon IDs
taxonomy entrez eutils written 21 months ago by zbwrnz • 0 • updated 21 months ago by Biostar ♦♦ 20
3
votes
1
answer
563
views
1
answer
Eutils: identifying complete genomes
eutils written 2.3 years ago by idan.yelin • 0 • updated 21 months ago by Biostar ♦♦ 20
3
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0
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695
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0
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News: NCBI : New API Keys for the E-utilities
ncbi api news eutils pubmed written 22 months ago by Pierre Lindenbaum ♦ 122k
9
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3
answers
1.1k
views
3
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How many ID's exist in BioSample?
ncbi biosample eutils bioproject written 22 months ago by pedrorvc • 30 • updated 22 months ago by Pierre Lindenbaum ♦ 122k
0
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1
answer
1.1k
views
1
answer
URL for NCBI Efetch + XML with full annotation table
ncbi xml efetch eutils annotation written 2.2 years ago by Pierre Lindenbaum ♦ 122k • updated 2.2 years ago by genomax ♦ 71k
5
votes
1
answer
645
views
6 follow
1
answer
'ORIGIN' flag missing in GenBank files
ncbi genbank eutils written 2.4 years ago by Sej Modha ♦ 4.4k • updated 2.4 years ago by Joseph Hughes • 2.7k
2
votes
1
answer
905
views
1
answer
Linking NCBI gene ID's to nucleotide sequence
ncbi rna-seq eutils written 2.5 years ago by jared.j.tromp • 0 • updated 2.5 years ago by Jean-Karim Heriche ♦ 20k
2
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0
answers
834
views
0
answers
eUtils and GEO database
geo ncbi eutils written 2.6 years ago by russhh • 4.7k • updated 2.5 years ago by Biostar ♦♦ 20
3
votes
1
answer
1.1k
views
1
answer
How to transform locus_tags to protein sequences (bacteria)
locus bacteria eutils written 2.5 years ago by natasha.sernova • 3.6k • updated 2.5 years ago by pure_reason • 10
1
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1
answer
682
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1
answer
Find species biosample entries on NCBI with attached antibiograms
ncbi eutils written 2.6 years ago by Jenez • 520 • updated 2.6 years ago by Asaf ♦ 6.1k
3
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1
answer
1.1k
views
1
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Pubmed title to pubmed ID conversion
R pubmed entrez eutils reutils written 2.7 years ago by daniele.sartori01 • 0 • updated 2.7 years ago by genomax ♦ 71k
4
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2
answers
1.8k
views
2
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How can we download all TSA and WGS from NCBI Trace by taxon programmatically?
ncbi assembly trace efetch eutils written 2.8 years ago by Michael Dondrup ♦ 46k
1
vote
1
answer
1.0k
views
1
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Alternatives to EUtils to get Taxa from GenBank
ncbi taxonomy eutils genbank written 2.9 years ago by irazoqui.matias • 10 • updated 2.9 years ago by Sej Modha ♦ 4.4k
1
vote
0
answers
849
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0
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Tool: BioDocumentViewer: NCBI/EBI web services made easy
ncbi ebi tool eutils ebe-eye written 2.9 years ago by patrick.durand • 120
1
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0
answers
1.3k
views
0
answers
Why big gaps when I use Entrez Eutils to download protein coding sequences.
entrez eutils written 3.1 years ago by Tom • 20
0
votes
1
answer
1.1k
views
1
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Extracting the coding sequences for a set of protein IDs - NCBI.
ncbi coding sequence protein eutils parsing written 3.1 years ago by Tom • 20 • updated 3.1 years ago by Sej Modha ♦ 4.4k
1
vote
0
answers
671
views
0
answers
Get fastas for genes by gene symbol
fasta eutils written 3.1 years ago by acorella • 30
0
votes
1
answer
694
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1
answer
Retrieving Cell names of an experiment using NCBI - Eutil API
ncbi eutils cell type rna-seq written 3.3 years ago by startup_biostar • 10 • updated 3.3 years ago by Ar • 890
19
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3
answers
4.5k
views
5 follow
3
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NCBI Protein GI to Genome Accession
ncbi sequence eutils written 4.3 years ago by Sej Modha ♦ 4.4k
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